Unit 3 Flashcards
Describe how proteins are broken down to AAs in the gut and tissues
- proteins are broken down by peptidases that are activated in the gut into AAs –> absorbed –> enter circulation
- two pathways for breakdown: ubiquination and lysosomes
Describe the flow of nitrogen from an AA to urea
- AA donates an NH2 to an alpha-ketoglutarate (by AT) to make L-glutamate + keto acid
- released as NH3 from glutamate, which regenerates the alpha-ketoglutarate
- urea cycle occurs in liver
- glutamate, NH3, and aspartate enter urea cycle
- NH3 from transamination –> carbamoyl phosphate by carbamoyl phosphate synthase 1 (RLS)
- nitrogen in carbamoyl phosphate enters urea cycle, combines with NH3 from aspartate to make urea
- urea is peed out
- AA+alpha-kg –> glutamate + alpha-keto acid –> NH3 –> urea cycle –> urea
List soem of the special issues assoc w sulfur containing, gluconeogenic, ketogenic, branched chain, and aromatic AAs
1) sulfur containing:
- cysteine and methionine
- disulfide bridges
- S-adenosylmethionine is important energy source for wound healing, vascular disease, and B12
- glutathione containse cysteine and is protective agaisnt ROS
2) branched chain:
- require special enzymes for breakdown
- def can lead to MSUD
3) aromatic:
- precursors for 5HT, niacin, dopamine, NE, epi, tetrahydrobiopterin, and thyroid hormone
Ways to categorize AAs
1) chemical properties:
- acidic/basic
- polora/non-polar
2) synthesis ability of body:
- essential: body can’t make
- non-essential: body can make
- conditionally essential: limited capacity for body to make
3) chem constituents:
- sulfur containing
- nitrogen side chain
- branched chain
- aromatic
4) energy needs:
- glucogenic: for gluconeogenesis
- ketogenic: make acetylCoA –> make ATP through TCAC or make ketones
Pathways for protein degradation
1) ubiquination in proteasomes
2) lysosomes
Pathways for protein degradation
1) ubiquination in proteasomes
2) lysosomes
Transamination
- for gluconeo, NH2 of AA needs to be removed
- for carbon skeleton to AA, need to add NH2
- bidirectional
- in liver
- AA donates NH2 to alpha-ketoglutarate –> L glutamate and alpha-keto acid (catalyzed by aminotransferase) –> NH3 released and alpha-ketoglutarate made again
Urea cycle
- NH3 from transamination converted to carbamoyl phosphate from carbamoyl phosphate synthase 1 (RLS)
- CP enters urea cycle and combines with NH3 from aspartate –> make urea which is peed out as urea nitrogen
- urine nitrogen as urea measures AA catabolism
- glutamine accepts N from other AAs –> brings to liver and kidney and donates to glutamate –> alpha-ketoglutarate (catalyze by glutamate dehydrogenase) (RLS)
Recognize the 20 AAs and list examples of post-translational mods
- each AA has their own tRNA
- examples:
1) collagen: triple helix with hydroxyproline and hydroxylysine - Hyp –> H-bonding in collagen to inc strength; prolyl hydroxylase converts Pro to Hyp
- Hyl –> crosslinks; lysyl hydroxylase coverts Lys to Hyl
- PH and LH rely on vitC
2) g-Carboxyglutamate (Gla): target proteins to membranes via Ca chelation
- G-glytamyl carboxylase converts Glu to Gla and required vitK
Describe scurvy
- vitamin C deficiency –> reduced collagen strength because of failure of post-trans mods of Hyp and Hyl
Describe cellular aspects of protein degradation and proteases involved in protein degradation
1) ubiquitin-proteasome:
- ATP-dep
- crosslink protein to ubiquitin –> sequestered to proteasome that has proteolytic activity
2) lysosome:
- ATP-indep
- engulf EC proteins
- broken down by acid hydrolysis
- proteases are in proenzyme form usually
1) pepsinongen –> pepsin by HCl to cleave proteins
2) enteropeptidase cleaves trypsinogen to trypsin
3) trypsinogen cleaved to trypsin –> cleaves all other zymogens in SI (chymotrypsinogen, procarboxypeptidase)
Describe transamination and list liver damage markers
- aminotransferase transfers amino groups
- converts alpha-keto acid to corresponding AA and also does reverse
- Keq is about 1
- reversible
- 100s of ATs for 20 AAs
- ATs move N to Asp and NH3 for urea cycle
- alanine aminotransferase (ALT) and aspartate aminotransferase (AST)
- PLP (pyridoxal phosphate) is a derivated of vitB6: used by ATs to hold/transfer amino groups
Describe the control points for the urea cycle
- carbamoyl phosphate synthase1 (CPS1)
- N-acetyl glutamate (formed by N-acetylglutamate synthase act by arginine) act CPS1
List the means of NH3 transport in the blood
- cannot be transported in blood, so rely on urea
- glutamine holds 2 NH3 groups
- GDH is a control pt for protein metabolism to remove N or add to AAs
- glutamine synthase converts glutamate to glutamine for transport to liver and entry into urea cycl
- in muscle, use alanine instead of glutamine for transport in alanine-glucose cycle
- in muscle, pyruvate –> alanine by transamination and in liver, alanine –> pyruvate by transamination and use it for gluconeo
Explain the difference between ketogenic and glucogenic AAs
- depends on outcome of keto acid
- glucogenic: makes pyruvate or TCAC intermediates (OAA from aspartate transam)
- ketogenic: no net prod of glucose (lysine and leucine breakdown gives acetylCoA)
Describe urea cycle disorders, hyperammonemia, MSUD
Hyperammonemia:
- elevated NH3 in blood due to UC enzyme defects –> inhibition of TCAC
- encephalopathy, coma, death
- asterixis
- limit protein intake
- give lactulose and trap NH4
MSUD:
- inc BCAAs (leucine, valine, isoleucine)
- BCAA –> deaminated to alpha-keto acid –> decarboxylated to succinlCoA or acetylCoA
Describe thyroid chemistry and understand how thyroxin is produced
- tyrosine makes T4 which is converted to T3
- TSH stimulated iodide uptake and stim release of T4 and T3
- thyroid peroxidase: oxidizes iodide to I2
- thyroglobulin: contains Tyr residues iodinated to form T4 and T3
- Thyroxin binding globulin: transport T4 and T3
- T4 (deiodinase) –> T3, which is a more active form of thyroxin with one less iodine
- T4 and T3 transported from thyroid through blood via TBG
Describe heme metabolism and porphyrias
- porphyrins are cyclic molecules of 4 pyroles made in liver
- pyrole –> bilirubin –> porphyrin
- bind Fe2+
- porphyrin synthesis:
1) gly + succinylCoA –> gamma-aminolevulinic (ALA) acid (by gamma-aminolevulinate synthase)
2) 2xALA –> porphobilinogen (by gamma-aminolevulinate dehydratase)
3) porphobilinogen ———> protoporphyrin 4 (by 4 enzymes)
4) protoporphyrin 9 –> heme (by ferrochelatase) - lead inhibits gamma-aminolevulinate dehydratase and ferrochelatase
- degradation: heme –> biliverdin (green) –> bilirubin (red orange) –> bilirubin diglucuronide –> urobilinogen –> stercobilin (brown)
- bilirubin is transported bia albumin to the liver where it is conjugated with glucuronic acid –> bilirbuin diglucuronide (conjugated bilirubin)
- in intestine, bilirbuin diglucuronide is oxidized to stercobilin
Urea cycle components
1) ornitihine –> citrulline:
- by carbamoyl phosphate synthetase 1
2) cirtulline + aspartate –> arginosuccinate
- by argininosuccinate synthase
3) argininosuccinate –> arginate
- by argininosuccinate lyase
4) arginine –> ornithine + urea
- by arginase
Carbamoyl phosphate synthetase 1
- found in mito
- bicarb + NH3 –> carbamoyl phosphate
- this rxn uses 2 ATPs
- N-acetylglutamate allosterically activates CPS1
- arginine activates N-acetylglutamate synthase which converts acetylCoA+glutamate –> N-acetylglutamate
Carbamoyl phosphate synthetase 1
- found in mito
- bicarb + NH3 –> carbamoyl phosphate
- this rxn uses 2 ATPs
- N-acetylglutamate allosterically activates CPS1
- arginine activates N-acetylglutamate synthase which converts acetylCoA+glutamate –> N-acetylglutamate
Maple Syrup Urine Disease
- when BCaKADHC is deficient –> build up of alpha-keto acids in urine
What are the 2 entry points of N into the urea cycle?
1) NH3 from glutamate by GDH –> free NH3 and an alpha-ketoglutarate; NH3 combines with CO2 to make carbamoyl phosphate
2) OAA converted to aspartate via transam and enters after citrulline
What is the key RLS of entry of N into the urea cycle and its allosteric activation?
Glutamate –> alpha-ketoglutarate + NH3 (by GDH)
- act by ADP and GDP
- inh by ATP and GTP