Unit 2 Flashcards
List the components of the energy balance equation including components of energy expenditure
- energy in = stored fuel + energy out
- TEE = Resting Metabolic Rate + Thermic Effect of Food + Energy Expended in Physical Activity
Comment on the accuracy of methods for estimating and measuring energy expenditure and energy intake
- can be measured by indirect calorimetry –> measures O2 consumption and CO2 production
- can estimate with age, sex, height, and weight
- doubly labeled water: O2 consumption in individuals over weeks
- in generally quite poor measurement
Estimate the pool sizes of stored fat, carbs, and protein in the body
- fat: 120k (13kg)
- carbs: 2k (500g)
- protein: no real storage pool
List the hierarchy of fuels for oxidation and discuss how this relates to weight gain
- no storage for protein –> excess protein is oxidized first
- then carbohydrates oxidized because smaller capacity for storing carbs as glycogen and can also be covnerted to fat
- then fat is stored
- if you are in positive energy balance –> accumulate body fat
ID the structures of glucose, fatty acids, and AAs
- glucose: 6 carbon ring; each carbon has a hydroxyl group
- fatty acid: long chain of carbon (sat or unsat) with a carboxylic acid (-COOH) group on the end
- AA: central alpha carbon with an amino group, carboxylic acid group, hydrogen, and side chain attached
Explain the general functions of the biochemical pathways
Carbs:
1) glycolysis: glucose –> 2 pyruvate, ATP, NADH
2) TCA cycle: pyruvate –> CO2, GTP, NADH, FADH2
3) electron transport: NADH, FADH2, ADP, O2 –> ATP, H2O
4) gluconeogenesis: lactate, carbon skeletons –> glucose
5) glycogen production: excess glucose –> glycogen storage
6) pentose phosphate pathway: excess glucose –> NADPH, ribose sugars
Fat:
1) de novo lipogenesis: acetylCoA –> fatty acids –> triglyceride
2) beta oxidation: triglyceride –> energy through TCA cycle
Protein:
1) urea cycle: leftover nitrogen to be excreted
What is going on during the fed state?
- insulin is high
- glucagon is low
- body is assimilating ingested nutrients
What is going on during the fasted state?
- insulin is low
- glucagon is high
- body is relying on stored nutrients
Describe the key features that makes a particular step in a linked enzyme pathway a “key step”
- where molecule changes its location (i.e. entering the cell, entering the mitochondria, or leaving)
- where the body invests energy in a molecule’s transition to activate the precursor (usually by ATP)
- rate limting steps
Describe the primary functions of glycolysis, gluconeogenesis, glycogen synthesis, and breakdown, and the pentose phosphate pathway
Glycolysis:
- breakdown glucose to generate energy
- glucose –> glucose-6-phosphate (trapped) –> fructose 1,6-bis-P (by PFK which is RLS) –> eventually to pyruvate
- produces ATP and NADH
- pyruvate then goes to TCA cycle or lactic acid cycle
Gluconeogenesis:
- while fasting, liver (and kidney) makes glucose muscle, RBCs, AAs from proteins, or glycerol from triglycerides
- AA carbon skeletons enter TCA cycle and leave at oxaloacetate to start gluconeogenesis
- pyruvate –> phosphoenol pyruvate (by PEPCK) –> fructose 1,6 bis-P by fructose 1,6 bisphosphatase –> fructose 6-P –> glucose 6-P –> glucose (by glucose-6-phosphatase)
Glycogen synthesis:
- used for rapidly available glucose for acute energy needs
- synth from glucose-6-P –> glucose-1-P –> UDP-glucose –> add onto growing glycogen molecule (by glycogen synthase) by 1-4 orientation
Glycogen breakdown:
- glycogen –> glucose-1-P –> glucose-6-P –> glucose
Pentose phosphate pathway:
- when glucose is high –> glycolysis
- if more glucose –> glycogen storage
- if even more glucose –> PPP –> generate NADPH for fatty acid synth, cholesterol synth defense against oxidative stress, and white cell function
- also generates 5-carbon sugards for nucleotides
Describe the primary function of the TCA cycle and the electron transport system
- acetylCoA oxidized to CO2 and energy generated and stored as GTP, NADH, FADH2
- NADH and FADH2 go to ETC to make ATP at IMM
Describe in a general sense the flux through these pathways in liver and skeletal muscle in fed and fasted states
depends on:
1) amount of substrate available: inc in substrate = inc in products
2) amount of enzyme: inc in enzyme = inc in flux through that pathway
3) allosteric regulation: molecule changes activity of an enzyme –> changes Km or Vmax
4) covalent modification of enzyme: phosphorylation or hormonal modification to change Km or Vmax
List and describe the key steps and intermediates in glycolysis
1) glucose –> G-6-P
- hexokinase/glucokinase
2) F-6-P –> F-1,6-BP
- PFK1
3) PEP –> pyruvate
- pyruvate kinase
Describe the regulation of the key glycolytic enzymes
1) hexokinase: in all tissue; high activity when glucose is low
- inh by G-6-P
-
2) glucokinase; in liver; high activity when glucose is high (storage in glycogen)
- inh by F-6-P
3) PFK1:
- fed: high insulin –> dec cAMP –> dec PKA –> dephos of PFK2/FBP2 –> PFK2 act –> inc F-2,6-BP –> inc PFK1 activity
- ATP inhibit
- AMP, F-2,6-BP act
4) pyruvate kinase:
- inhibited by ATP, alanine, and PKA
- stim by F-1,6-BP
How does glucose get into the cell?
- through glucose transporter
- tissues that respond to insulin (skeletal muscle and adipose tissue) use Glut 4 to transport glucose; inc transport after exposure to insulin
- tissues in the liver use Glut 2 and level of this transporter in membrane does not change with insulin
Reaction 1 in glycolysis
- activation of glucose to glucose-6-phosphate
- catalyzed by hexokinase or glucokinase
- irreversible
1) glucose is phos, so have a neg charge and can’t leave cell
2) conserve metabolic energy through phos
3) phos lowers activation energy of next enzyme and inc specificity
Hexokinase vs. glucokinase
Hexokinase:
- not selective for glucose
- in all cells
- low Km for all sugars
- inhibited by G-6-P
Glucokinase:
- selective for glucose
- in liver and pancrease
- high Km for glucose
- inhibited by F-6-P
- when blood glucose is high, transported to hepatocytes where GK converts it to G-6-P and stores it
- when blood glucose is low, GK activity dec and reduces trapping of glucose –> goes to peripheral tissues where there is HK
Reaction 2 in glycolysis
- rearrange atoms of G-6-P to F-6-P which will be phos again
Reaction 3 in glycolysis
- F-6-P + ATP –> F 1,6-bisphos + ADP
- catalyzed by PFK1
- rate-limiting and committed step of glycolysis and irreversible
- PFK1 is stim by AMP and F 2,6-BP, inhibit by ATP or citrate
- F-6-P can also become F 2,6-bisphos by PFK2 (inc insulin), which is a potent activator of PFK1 even when ATP is high (leading to inc glycolysis)
- PFK2 can be a kinase and a phosphatase
- have two phos groups in F 1,6-bisphos so inc free energy
Reaction 4
- split F 1,6-bisphos into two glyceraldehyde-3-P
- 2 GA-3-P + 2 NAD+ + Pi –> 2 1,3-BPG + 2 NADH + 2H+
1) this is catalyzed by GA-3-P dehydrogenase
2) important to remember NADH generation
3) energy conserving
4) 1,3-BPG has a high energy transfer potential
5) first oxidation reaction
6) NADH must be reox to NAD+ (through ETC or lactic acid cycle) for glycolysis to continue because GA-3-P will not be oxidized without NAD+
Reaction 5 in glycolysis
- 2 1,3-BPG + 2 ADP –> 2 3-PG + 2 ATP
- first synth of ATP in substrate level phosphorylation
- catalyzed by PG kinase
- consumed 2 ATP in reaction 3, made 2 ATP now so net ATP is 0
Reaction 6 and 7 in glycolysis
- rearrangement to synth phosphoenol pyruvate (PEP)
Reaction 9 in glycolysis
- dehydration
Reaction 10 in glycolysis
- 2 PEP + 2 ADP –> 2 pyruvate + 2 ATP
- catalyzed by pyruvate kinase (important to know)
1) irreversible
2) 2nd substrate level phos gen of ATP
3) stim by F 1,6-BP in glycolysis
4) pyruvate kinase is inhibited by ATP, alanine, and PKA (due to glucagon action) –> stim gluconeogenesi and inhibit glycolysis
5) fasting: glucagon inact of pyruvate kinase by PKA –> inhibit glycolysis and stim gluconeogenesis
Lactic acid production
- without O2, pyruvate is converted to lactate which is converted to glucose (via gluconeogenesis) during recovery
- this produces NAD+ from NADH
- in liver and heart, NADH/NAD ratio is lower than in muscle –> convert lactate to pyruvate –> goes back into TCA cycle
- in MI, PE, etc., have inc lactate in plasma
- lactate dehydrogenase catalyzes NAD to NADH and NADH to NAD (lac to pyr and pyr to lac)
List the principle products of the TCA cycle
- NADH, FADH2, GTP
What happens to pyruvate in the fed state?
- converted to alanine
- can enter the mitochondria as acetylCoA for fatty acid synth
What happens to pyruvate in the fasting state?
- pyruvate made from lactate in peripheral tissues is converted to oxaloacetate by pyruvate carboxylase –> carbon skeletons for gluconeogenesis
Pyruvate dehydrogenase complex
- in mito matrix
- pyruvate from glycolysis into mito by transport system
- pyruvate converted to acetylCoA through PDH with coenzymes CoA, TPP (thiamine/B1), FAD (riboflavin B2), NAD (niacin)
- ATP, acetylCoA, NADH, fatty acids inhibit PDH
- AMP, CoA, NAD+ activate it
- downreg when fuel is available, activated when fuel is not available
- fed: PDH is active and dephos
- fasting: PDH is inact and phos (by PDH kinase, which is inhibited by pyruvate and stim by ATP)
Reaction 1 of TCA cycle
- acetylCoA and oxaloacetate make citrate*
- catalyzed by citrate synthase*
- irreversible
- citrate is a fdbk inhibitor of PFK1
- citrate also leaves TCA cycle to form fatty acids in de novo lipogenesis
Reaction 2 of TCA cycle
- citrate is converted to isocitrate
- catalyzed by aconitase
Reaction 3 of TCA cycle
- isocitrate is converted to alpha-ketoglutarate*
- catalyzed by isocitrate dehydrogenase
- CO2* and NADH* is produced
- AAs can enter here
Reaction 4 of TCA cycle
- alpha-ketoglutarate is converted to succinylCoA*
- catalyzed by alpha-ketoglutarate dehydrogenase
- coenzymes are TPP, lipoic acid, CoASH, FAD, and NAD+
- second CO2* and NADH* are produced
- AAs can also enter here
Reaction 5 of TCA cycle
- energy in succinylCoA is conserved in formation of GTP*
- GTP can be converted to ATP
- substrate level phosphorylation
- catalyzed by succinate thiokinase
Reaction 6 of TCA cycle
- succinate oxidated to fumarate*
- catalyzed by succinate dehydrogenase*
- FAD is electron acceptor bound to IMM –> FADH2 go directly to coenzymeQ of ETC
Reaction 7 of TCA cycle
- fumarate hydrated to malate*
- catalyzed by fumarase
Reaction 8 of TCA cycle
- malate oxidized to oxaloacetate*
- catalyzed by malate dehydrogenase
- third NADH is produced
Citrate
- where fatty acid synth takes off
- reaction 1
alpha keto-glutarate
- entrance point for AAs to contribute to gluconeogenesis
- reaction 3
succinylCoA
- entrance point for AAs and products of breakdown of fatty acids with odd # of Cs that contribute to gluconeogenesis
- reaction 4
fumarate
- entrance point for AAs
- byproduct of urea cycle
- reaction 6
oxaloacetate
- involved in gluconeogenic pathway form pyruvate
Describe the components of the ETC and their location within the mito and their functions
- IMM
- complex 1 uses NADH
- complex 2 uses FADH2
- complex 3 and 4 use Fe and CoQ and cytC
- oxidize NADH and FADH2 to move electrons to O2 to make H2O and ATP with proton gradient
Describe the role of PGC1 alpha in mito biogenesis
- excess fuel delivery without compensatory ATP synthesis = generation of oxygen radicals –> cell injury, aging, apoptosis
- PCG1alpha is a key molecular mediator of mito proliferation and a drug target
What are the substrates and products of ox phos?
Substrates
- NADH, FADH2, O2, Pi, ADP
Products
- NAD, FAD, H2O, ATP
Oligomycin
- drug that inhibits ATP synthesis –> NADH and FADH2 accumulate –> revert to glycolysis for energy
CO poisoning
- hemoglobin can’t release O2 –> ETC can’t run even though PO2 is high
Uncoupling proteins
- proton gradient dissipates –> loss of chemical energy as heat
Oxidative phosphorylation
- NADH and FADH2 bring electrons to O2 in the ETC chain
- ETC chain consists of 4 large complexes in the IMM
- proton gradient across IMM that is used to form ATP
- ADP controls rate of ox phos (high ADP = inc flow)
When does gluconeogenesis occur?
- fasting, exercise, low carb/high protein diet, stress when counter-reg hormones are high, insulin resistance, T2DM
What cells require glucose as their only source of energy?
- brain, RBCs, renal medulla, sperm, and embryonic tissues
How large is the glucose/glycogen reserve in the normal body?
- 1-2days
What are the main carbon skeleton sources for gluconeogenesis?
1) lactate:
- formed during exercise or if no mito or O2
- lactate –> pyruvate –> glucose through the liver
2) AAs
- alanine and glutamine
- alanine becomes pyruvate when trans-aminated
- gluatmine becomes alpha-ketoglutarate when trans-aminated
- precurses for gluconeogenic pathway
- other AAs can enter TCA cycle
3) glycerol:
- hydrolysis of triglycerides –> enter halfway up pathway
Bypass reaction 1 of gluconeogenesis
- converts pyruvate to PEP through OAA
- pyruvate is transported into mito
1) pyruvate + bicarb + ATP –> OAA + ADP + Pi - catalyzed by pyruvate carboxylase* (uses ATP and req coenzyme biotin and acetylCoA
2) OAA + NADH + H –> malate + NAD (so OAA can leave mito)
- catalyzed by malate dehydrogenase*
- malate leaves mito through malate-alpha-ketoglutarate transporter
3) malate + NAD –> OAA + NADH + H
- malate dehydrogenase* but in cytosol
4) OAA + GTP –> PEP + CO@ + GDP
- catalyzed by PEPCK
*- needed an ATP and a GTP
Bypass reaction 2 of gluconeogenesis
- convert F-1,6-BP to F-6-P
- catalyzed by F-1,6-BPase (FBP-1)
- bifunctional enzyme
- regulated by F-2,6-BP and by phos by insulin and glucagon (gluconeogenesis when insulin is low and glucagon is high)
1) high glucagon (low insulin) –> inc cAMP –> inc PKA
2) PKA phos PFK-2/FBP-2
3) PFK-2 is inact, FBP-2 is act –> dec formation of F-2,6-BP
4) dec F-2,6-BP –> dec inhibition of FBP-1 –> inc gluconeogenesis
Bypass reaction 3 of gluconeogensis
- convert G-6-P to glucose
- G-6-P + H20 –> glucose + Pi
- catalyzed by G-6-Pase
- G-6-Pase is found in ER of hepatocytes and kidney cells (G-6-P is transported into ER and glucose is transported out of cell)
- this can deliver into bloodstream and supply other tissues
- glycogen cannot do this (must use Cori cycle)
Describe the situations in which flux through glycolysis is inc or dec
- inc glucose
- inc enzymes
- certain allosteric reg
- covalent modification of an enzyme (phos/dephos)
What are the final products of aerobic and anaerobic glycolysis?
- lactate is the end product of anaerobic glycolysis (major pathway in RBCs and sperm
- pyruvate + NADH = lactate + NAD
- pyruvate is the end product of aerobic glycolysis
Describe the metabolic role of the TCA cycle
- makes more energy from glucose, fatty acids, and AAs
- makes biosynthetic precursors (AAs, nucleotides)
What are the substrates involved in ox phos?
- FADH2, NADH, H, ADP, Pi, O2, electrons
What are consequences of defects in electron transport?
- muscle myopathies
- heart failure
- alzheimer’s
- hypoglycemia
Glycogen synthesis
1) G-6-P to G-1-P by phosphoglucomutase
2) G-1-P + UTP –> UDP-glucose by UDP-glucose pyrophosphorylase
- 3) UDP-glucose to growing chain
- catalyzed by glycogen synthase
- UDP-glucose transferred to hydroxyl group at c-4 terminus of glycogen; forms alpha-1,4 glycosidic linkage
- UDP displaced and released
- can only add more glucose residues if chain is initiated and has 4+ glucose residues
4) branching enzyme makes branches
- alpha 1,6 formation
- inc solubility
Glycogen breakdown
1) release of G-1-P from glycogen
- Glycogen (n res) + Pi –> G-1-P + glycogen (n-1 res)
- catalyzed by glycogen phosphorylase
2) remodel remaining glycogen to allow further degradation
- debranching enzyme shifts 3 residues when GP reaches 4 residues away from a 1,6 branch
- glucosidase hydrolyzes last residue
3) convert G-1-P into G-6-P for further metabolism or export from cell
- catalyzed by phosphoglucomutase
4) G-6-P –> glucose
- catalyzed by G-6-Pase
Regulation of glycogen
In fed state:
- glycogen synthase is activated by G-6-P
- glycogen phosphorylase is allosterically inhibited by G-6-P and ATP
During muscle contraction:
- membran depol –> Ca release –> Ca bind to calmodulin –> activate phosphorylase kinase –> phos glycogen phosphorylase –> activate glycogen phosphorylase –> glycogen degrad
AMP:
- AMP binds to inactive glycogen phosphorylase and activates it w/o phos
Activation of glycogen degrad by cAMP-prod pathways
- CR hormones (glucagon/epi) bind to cell surface –> signal need for glycogen degrad
- activate PKA –> phos phosphorylase kinase –> activates –> phos glycogen phosphorylase –> activates –> glycogen degrad
- phosphorylase kinase: active with phos, deactive with dephos (by protein phosphatase 1)
- glycogen phosphorylase: active with phos, deactive with dephos (by phosphoprotein phosphatase 1)
Inhibition of glycogen synthesis by a cAMP-directed pathway
- glycogen synthase: active with dephos, deactive with phos
- if deactive/phos, G-6-P can allosterically activate it
- dephos is catalyzed by protein phosphatase 1)
- controlled by epi/glucagon –> activated cAMP PKA –> PKA phos and inactivates glycogen synthase
- insulin stimulates synthesis by activating PP1 and inactivating GSK3
- in liver, glucagon released –> activates glycogen phosphorylase kinase –> activates glycogen phosphorylase –> glucose released into blood
- when glucose is normalized, glucose enters hepatocytes, binds to allosteric site on glycogen phosphorylase –> phosphatase removes phosphate from glycogen phosphorylase –> inactivate and turn off glycogen breakdown
What are the functions of the Pentose Phosphate Pathway?
1) produce NADPH for biosynth of fatty acids and steroids (prominent in mammary gland, adrenal cortex, liver, and adipose tissues)
2) produces ribose-5-phosphate for synthesis of nucleotides; important for proliferating cells/tissues
3) produces glycolytic intermediates
G-6-P dehydrogenase
1) G6PD catalyzes first step which is committed and rate limiting
- generates NADPH
2) dehydrogenation and decarboxylation
- produce another NADPH and ribulose-5-phosphate
3) go into oxidative or non-oxidative phase:
- oxidative: generates NADPH for lipid biosynth
- non-ox: sugars converted back to G-6-P if more NADPH or pentose phosphates needed or to glycolytic intermediates if energy needed
G-P-6 dehydrogenase deficiency and hemolysis
- ox phase of PPP is major source of NADPH
- NADPH provides reducing equivalent for redox rxns involving glutathione (GSH) and maintains it in a reduced state
- sulfa abx react with GSH and deplete it
- if there is G-6-PD deficiency –> cannot regenerate GSH to protect against ROS –> Hb becomes oxidized, cross links form, RBCs aggregates called Heinz bodies –> hemolytic anemia
Pyruvate kinase deficiency
- second most common cause (after G6PD def) of enzyme-def linked hemolytic anemia
Thiamine deficiency
- inability to oxidize pyruvate
- see neuro signs
- see high levels of pyruvate in blood
Biotin deficiency
- build up of pyruvate
- converted to lactic acid –> lactic acidosis
Von Gierke’s disease
- AR inheritance
- def of G6Pase
- glycogen is normal but fasting hypoglycemia, ketosis, lactic acidosis, enlarged liver and kidneys
Describe the structure of glycogen and why this is important
- highly branced polymer of glucose residues
- mostly in liver and muscle
- allows for inc solubility
Describe the pathways for the formation and breakdown of glycogen including the key intermediates
Synthesis:
- in liver and muscles
- uses UDP-glucose
- G-6-P is converted to G-1-P to UDP-glucose
Breakdown:
1) release of G-1-P from glycogen
2) remodel glycogen substrate to allow for further degradation
3) convert G-1-P into G-6-P for further degradation
List the key regulated steps in glycogen synthesis and breakdown and describe their regulation
- glycogen synthase catalyzes transfer of glucose from UDP-glucose to chain
- glycogen phosphorylase catalyzes the cleavage of glycogen into G-1-P
Describe the coordinate regulation of glycogenesis/ glycogenolysis and in what metabolic conditions each are favored
- both regulated by insulin and glucagon
glycogen synth:
- stim when substrate availability and energy levels high
- glycogen synthase phos by GSK –> deact
- glycogen synthase dephos by protein phosphatase 1
- G-6-P allosterically activates glycogen synthase –> better substrate for PP1
- insulin stim glycogen synth by dephos/act PP1 –> PP1 dephos/act glycogen synthase
glycogen breakdown:
- stim when energy levels and glucose are low
- glucagon/epi indicate that glycogen needs to be degraded
- Ca release stim degradation
- AMP stim degradation
What are the key products of the PPP?
- NADPH for biosynth of fatty acids and steroids
- ribose-5-phosphate for nucleotides
- glycolytic intermediates