Unit 1 Flashcards
What are obstacles that need to be overcome transfusion therapy?
- a nontoxic anticoagulant
- appropriate devices to perform the transfusion
- appropriate preservation solutions
- avoiding circulatory overload
- component therapy
What are pre-donation steps involved in the donation process?
- Educational history questionnaire
- Donor health questionnaire
- Abbreviated physical examination
What are the three areas of RBC biology that are crucial for normal survival and function?
- RBC membrane
- hemoglobin structure and function
- RBC metabolism
- defects in any of these areas will result in RBC survival of fewer than the normal 120 days in circulation
Describe current status
- efforts and standards of the American Association of Blood Banks (AABB)
- general requirements for collection of blood from volunteer donors
- components prepared from donated whole blood
What is the amount of whole blood in a unit when donating?
Traditionally, 450 mL +/- 10% (1 pint)
Most recently 500 mL +/- 10%
- has to have minimum Hct of 38%
How many pints does the average human have?
10-12 pints
How long it take for donor RBCs to be replenished?
1-2 months
How often can someone donate blood?
Every 8 weeks
What are the 3 components of whole blood?
- pack RBC
- plasma
- platelets
How long can a unit of whole blood (prepared) RBCs may be stored for?
21-42 days depending on the anticoagulant preservation solution
Describe the abbreviated physical examination
- blood pressure
- pulse
- temperature
- hemoglobin
- Hct
- inspection of arms for skin lesions
Describe the RBC membrane
- represents a semipermeable lipid bilayer supported by a protein mesh-like cytoskeleton structure
- phospholipids and their orientation
- integral and peripheral protieins
- membrane deformability
Describe asymmetrical organization of the RBC memebrane
- external layer: glycoplipids and choline phospholipids
- internal cytoplasmic layer: amino phospholipids
What is the biochemical composition of the RBC?
- 52% protein
- 40% lipid
- 8% carbohydrates
Describe deformability of RBC
- loss of ATP: decreased phosphorylation of spectrin required for membrane deformability
- increases membrane calcium = membrane rigidity
- cells are sequestered by the spleen
- the loss of the RBC membrane, as is seen in spherocytes and bite cells, shortens the survival of these forms
What are the 3 things that RBCs need to reman viable?
- Flexible
- Deformable
- Permeable
Describe permeability of the RBC
- properties of the RBC membrane and the active RBC cation transport prevent colloid hemolysis and control the volume of the RBCs
- permeable to water and anions (Cl-, HCO3-)
- impermeable to cations (Na+; K+)
- Calcium (Ca2+) is also actively pumped from the interior of the RBC
- ATPs are needed to keep Na+ and Ca+ out of the cell
- storage depletes ATPs: Na+ and Ca+ are allowed to accumulate intracellularly and K+ and water are lost
- cells becomes rigid
How are RBC volume and water homeostasis maintained?
- by controlling the intracellularly concentrations of the sodium and potassium
Describe metabolic pathways for RBCs
- pathways that produce ATP are mainly anaerobic
- RBC anucleate and have no mitchondrial apparatus for oxidative metabolism
- pathways;
—> anaerobic glycolytic pathway (90% of ATP)
—> 3 ancillary pathways that serve to maintain the structure and function of hemoglobin
What are the 3 ancillary pathways of RBCs?
- Penrose pathway - 10% of ATP
- Methemoglobin pathway - affects the RBC survival and functions after transfusion
- Luebering-Rapaport Pathway - permits accumulation of 2,3 DPG
Describe 2,3-diphosphoglycerate (2,3-DPG)
- important RBC organic phosphate
- amount in RBCs has a significant effect on the affinity of hemoglobin for oxygen and therefore affects how well RBCs function post-transfusion
Describe Hemoglobin oxygen dissociation curve
- hemoglobin role in oxygen delivery to the tissues and carbon dioxide excretion (gas transport: most important function)
- a sigmoid-curve relationships
- allosteric changes occur as the hemoglobin loads and unloads oxygen
What does it mean the Hemoglobin oxygen Dissociation curve shifts to the right?
- hypoxia
- increase in 2,3 DPG which increases the Hgb to rerelease more O2
What does it mean when the Hemoglobin oxygen dissociation curve shifts to the left?
- alkalosis
- decrease in 2,3 DPG causes less O2 released
What are the 3 different ligands found within RBC?
- H+ ions
- CO2
- organic phosphate (2,3 DPG plays most important role)
What does normal hemoglobin function depend on?
Adequate 2,3-DPG levels in the RBC
Describe RBC preservation
- the goal of blood preservation is to provide viable and functional blood components for patients requiring blood transfusions
- viability of RBCs must be maintained during the storage time
What are the Food and Drug Administration requirements?
- average 24-hour post-transfusion RBC survival of more than 75%
- free hemoglobin less than 1% of total hemoglobin
Describe RBC viability
- assessment of post- transfusion RBC survival
- a measure of in vivo RBC survival following transfusion
- the loss of RBC viability has been correlated with the “lesion of storage”, which is associated with the various biochemical changes
- influences of 2,3-DPG levels
What occurs to 2,3-DPG levels in stored blood?
-As RBCs are stored, 2,3-DPG levels decrease
- DPG-depleted RBCs may have an impaired capacity to deliver oxygen to the tissues
- 2,3-DPG is reformed in stored RBCs after in vivo circulation depending on the recipients acid-base statues, phosphorus metabolism, degree of anemia, and the overall severity of the disorder
How is post-transfusion RBC survival determined?
- RBCs are taken from a healthy individual and stored.
- Labeled with radioisotopes
- Reinfused to the original donor
- Measure 24 hours after transfusion
What temperature does blood need to stored at the remain viable?
1-6 C
What are anticoagulant preservation solutions?
- incorporation of adenine and its effects on glycolysis and ATP levels
- Pathophysiologic effects of the the transfusion of RBCs with low 2,3- DPG level and increased affinity for oxygen
—> increased cardiac output
—> decreased in mixed venous (pO2) tension
—> combination of these - effects of the plastic material used for PVC bags relates to the plasticized, di(ethylhexyl)-phthalate (DEHP), which is used in the manufacture of the bags
Describe additive solutions of RBCs
- preserving solutions that are added to the RBCs after removal of the plasma with/without platelets
—> effect on RBC viability
—> effects on viscosity of RBC concentrates - all the additive solutions are approved for 42 days of storage for packed RBCs
- none of the solutions maintain 2,3 DPG throughout storage time
- 2,3-DPG is depleted by the second week of storage
What are the 3 additives that are licensed in the US?
- Adsol (AS-1) (Baxter Healthcare)
- Nutricel (AS-3) (Pall Corporation)
- Optisol (AS-5) (Terumo Corporation)
What are the RBC storage lesions (changes)?
- Viable cells —> Dec.
- glucose —> Dec.
- ATP —> Dec.
- pH —> Dec.
- 2,3-DPG —> Dec.
- Lactic acid —> Inc.
- Plasma K+ —> Inc.
- Plasma hemoglobin —> Inc.
- Oxygen dissociation curve —> shifts to left
What are the chemicals in anticoagulants?
- citrate (sodium citrate/acetic citrate) - chelate calcium
-monobasic sodium phosphate - maintains pH during storage, necessary for adequate levels of 2,3-DPG - dextrose- substrate for ATP production
- adenine - production of ATP. Extends shelf from 21 days to 35 days. Only present in CPDA-1
What are 4 approved anticoagulant preservative solutions?
- acid citrate-dextrose (formula A) (ACD-A) (21 days)
- Citrate-phosphate dextrose (CPD) (21 days)
- citrate-phosphate- double dextrose (CP2D) (21 days)
- citrate-phosphate-dextrose-adenine (CPDA-1) (35 days)
Describe RBC freezing
- primarily used from autologous and the the storage of rare blood types
—> a cyroprotective agent is added to RBCs that are less than 6 days old
—> Glycerol (40% or 20% w/v) is used most commonly and is added to the RBCs slowly with vigorous shaking, enabling the glycerol to permeate the RBCs - RBCs are then rapidly frozen and stored at 65C
- currently, the FDA licenses frozen RBCs for a period of 10 years from the date of freezing
What must be done after a transfusion of frozen cells?
- must be proceeded by a deglycerolization process
- removal of glycerol is achieved by systematically replacing the cryoprotectant with decreasing concentrations of saline
- excessive hemolysis is monitored with the hemoglobin concentration the of the wash supernatant
- osmolarity of the unit should also be monitored to ensure adequate deglycerolization
What are the advantages of high concentration glycerol technique?
- initial freezing temp: -80 C
- No need to control freezing rate
- Mechanical freezer
- Max. Strorage temp: -65 C
- shipping requirements: Dry ice
- effects of changes in storage temperature: can be thawed and refrozen
What are disadvantages of the low concentration glycerol technique?
- initial freezing temp: = -196C
- Need to control freezing site
- liquid nitrogen freezer
- max. Storage temp: -120 C
- shipping requirements: liquid nitrogen
- effect of changes in storage and temperature: critical
What are advantages of RBC freezing?
- long term storage
- maintenance of RBC viability and function
- low residual leukocyte and platelets
- removal of significant amounts of plasma proteins
What are disadvantages of RBC freezing?
- time consuming process
- higher cost of equipment and materials
- storage requirements (-65C)
- higher cost of product
Desribe RBC rejuvenation
- Rejuvenation of RBCs is the process by which ATP and 2,3-DPG levels are restored or enhanced by metabolic alterations
- RBCs stored in the liquid state can be rejuvenated at outdate or up to 3 days after outdate, depending on RBC preservative solutions used.
- must be transfused in 24 hours or frozen for long term storage
What does FDA-approved rejuvenation solution contain?
- phosphate, inosine and adenine
Describe the research and development in RBC preparation and preservation
- improved additive solutions
- procedures to reduce and inactivate pathogens
- procedures to convert A-, B- and AB_ type RBCs to O-type RBCs
- methods to produce RBCs through bioengineering (blood pharming)
- RBC substitutes - will provide safe and effective oxygen carrier that could eliminate many of the problems associated with blood transfusion
- ensuring product safety
- RBCs substitutes - hemoglobin-based oxygen carriers
- RBCs substitutes - perfluorocarbons
- Tissue engineering of RBCs
—>receiving more attention and funding than other blood substitutes
—>produced by culturing stem cells in the presence of the essential cytokines stem cell factor and erythropoietin
Describe platelet preservation `
- annually in the U.S. millions of platelets units are distributed and transfused
- the financial impact of outdated and returned platelet units is the primary reason to find a way to improve inventory management
- platelet preservation is one way to reduce the number of outdated, discarded platelet units
Why is platelet storage a major challenge to the blood bank?
Because of storage limitations:
- 5-day shelf life in the US
- Bacterial contamination at incubation of 22 C
- a varying degree of platelet activation/aggregation
- release of intracellular granules
- a decline in ATP and ADP levels
*platelet storage lesion
What are the quality control measurements typically required for platelet preservation?
- platelet concentrate volume
- platelet count
- pH of the unit
- residual leukocyte count if claims of leukoreduction are made
- platelet swirl assessment
What are clinical uses of platelets?
- treatment of bleeding associated with thrombocytopenia
- prophylactic treatment for hematology-oncology patients with thrombocytopenia
- today, platelets are prepared as concentrates from whole blood and increasing apheresis
- platelets concentrates prepared from the whole blood and apheresis components are routinely stored at 20-24, with continuous agitation for up to 5 days
- FDA standards define the expiration time as midnight of day 5
- in the US, platelets are being stored in a 100% plasma medium, unless a platelet additive solution used
Describe platelet viability
- maintaining pH was a key parameter for reacting platelet viability in vivo when platelets were stored at 20-24C
- pH 6.2 is the current standard for maintaining satisfactory platelet viablility
- second generation storage containers have increased gas transport properties
What are some platelet testing and quality control monitoring procedures?
- actual platelet yield
- weight/volume conversion is necessary to determine the volume of each platelet collection
- bacterial contamination testing
The efficacy of the transferred platelet concentrates is usually estimated from the _________________ of platelets measured after transfusion
- corrected count increment
What are advantages of Hemoglobin-based oxygen carriers?
- long shelf life
- very stable
- no antigenicity (unless bovine)
- no requirements for blood typing procedures
What are disadvantages for hemoglobin-based oxygen carriers?
- short intravascular half- life
- possible toxicity
- increased O2 affinity
- increased oncotic effect
What are advantages of perfluorechemicals?
- biological inertness
- lack of immunogenicity
- easily synthesized
What are disadvantages of perfluorochemicals?
- adverse clinical effects
- high O2 affinity
- Retention in tissues
- requirement for O2 administration when infused
- deep-freeze storage temperatures
What is the platelet storage lesion?
- pH —> Dec.
- ATP —> Dec.
- Morphology scores change from discoid to spherical —> Dec.
- platelet aggregation —> drop in response to some agonists
- Lactate —> Inc.
- Degranulation —> Inc.
- platelet activation marker —> Inc.
What is the corrected count increment (CCI) of platelets measured after transfusion?
- a calculated measure of patient response to platelet transfusion that adjusts for the number of platelets infused and the size of the recipient, based upon body surface area (BSA)
CCI = (postcount - pre count) x BSA/platelets transfused
Describe measurement of viability and functional properties of stored platelets
- pre-transfusion and post-transfusion platelet counts at 1 hour and/or 24 hours and expressing the difference base on the number of platelets transfused (corrected count increment) to assess platelets viability
- Room temp stored vs. cold-stored platelets
Describe platelet storage and bacterial contamination
- major concerns associated with storage of platelets at 20-24 C is the potential for bacterial growth
—> room temperature storage and the presence of oxygen can encourage bacterial proliferation
—> sepsis due to contaminated platelets is the most common infectious complication of transfusion
—> an estimated 10% to 40% of patients transfused with a bacterially contaminated platelet unit develop life-threatening sepsis - in 2002, CAP added a requirement for laboratories to have a method to screen platelets for bacterial contamination
- AABB introduced a similar requirement in 2004
- samples are not taken until a after atleast 24 hours of storage to allow bacterial replication to detectable levels
-potentially effects availability of platelets
What are 3 FDA approved commercial systems for screening platelets for bacterial contamination?
- BacT/ALERT (bioMerieux, Durham, NC)
2..eBDS (Pall corp., East Hills, NY) - Scansystem (Hemosystem, Marseilles, France)
Describe Pathogen Reduction for Platelets
- pathogen inactivation (PI) is the process of treating the blood component
- components are referred to as being pathogen reduced (PR)
- pathogen inactivation technology reduces the risk of transfusion-transmitted infections
What are the advantages of using platelet additive solutions?
- optimizes platelet storage in vitro
- saves plasma for other purposes
- facilitates ABO-incompatible platelet transfusion-related acute lung injury (TRALI)
- improves effectiveness of photochemical pathogen reduction technologies
- potentially improves bacterial detection
Describe BacT/ALERT
-measures bacteria by detecting a change in CO2 levels associated with bacterial growth
- provides continuous monitoring of platelet sample-containing culture bottles
Describe eBDS
- measures oxygen content of the air within the sample pouch for 18 to 30 hours following incubation
- decrease in oxygen level indicates the presence of bacteria
What are the majority of platelets transfused in the US today?
Apheresis platelet
What the storage time and storage temperature or platelet concentrates and apheresis platelet components?
5 days at 20-24 C
How long can RBCs be frozen for?
10 years
One criterion used by the FDA for approval of new preservation solutions and storage containers is an average 24 hour post-transfusion RBC survival of more than:
75%
What is the lowest allowable pH for a platelet component at outdate?
6.2
What test is approved for bacterial detection specific to extending the expiration of apheresed platelets to 7 days?
Pan Genera Detection (PGD) test
What is the most common causes of bacterial contamination of platelet products?
- entry of skin plugs into the collection bag
What method does the INTERCEPT pathogen reduction system use?
- Amotosalen and UV light
Describe classic genetics
Genetics is concerned with
- the biochemical and biophysical nature of nucleic acids
- population studies and epidemiology
- understanding of inheritance patterns
- provide insight on anitgen-typing discrepancies due to weakened or variant alleles
Where is genetic information carried?
- chromosomes
What is a gene?
A unit of inheritance coding
What are genes?
- Subunit of chromosome
- found along the chromosome at Loci
What is an allele?
Alternate forms of a gene at a given locus
What is amoph?
“Silent gene” (no gene product is produced
What is codominant?
Alleles that are both expressed in heterozygous state
(Example: AB blood group
What is genotype?
- total genetic makeup, both expressed and unexpressed genes
What is phenotype?
- observable produce of the gene at a given locus
(Example: A/O or A/A can be genotype, but both will be A as phenotype
What is Cis position?
- when the loci that the genres occupy are on the same chromosome
What is trans position?
- the location of two or more genres on opposite chromosomes of a homologous pair
- example DCe/DcE
—> C = trans position to E (opposite side of chromosome)
—> C = cis position to e (same side of chromosome)
What is heterozygous?
Different alleles at a given locus on a pair of chromosomes. Sometimes known as a single dose (AO or Kk)
What is homozygous?
Identical alleles at a given locus on a pair of chromosomes. Sometimes known as double dose (AA; KK or kk)
What is recessive?
Allele expressed in homozygous state, marked by a dominant allele
What is dosage?
Phenomenon where an antibody reacts more strongly with a red cell carrying a double dose rather than a single dose
What is public antigen?
- found on RBCs of greater than 98% of population
What is private antigen?
Found on RBCs of less than 1% of population
What is autosome?
Any chromosome other than than the sex chromosome (X and Y)
What are the major issues of population genetics of concern to blood banking?
- pioneering work of Linnaeus and Darwin
- Mendels law of inheritance
- Hardy-Weinberg principle
- inheritance patterns
Describe Mendel’s First law of inheritance
- shows that alleles of genes have no permanent effect on one another when present in the same plant but segregate unchanged by passing into different gametes
- unlike the flower color of many types of plants, most blood group genes are inherited in a codominant manner
- in codominace, both alleles are expressed, and their gene products are seen at the phenotypic level
—> in the MNSs blood group system, a heterzygous MN individual would type as both M and N antigen positive
Describe sweet pea flower experiment
- Mendel’s first law
- parental: bred all one color flower
—> homozygous for either red (RR) or white (rr) - first filial: cross-bred two plants; obtained second generation
—> heterozygous (Rr) - second filial: produced red and white flower in 3:1 ratio
Describe the Mendel’s second law of inheritance
- law of independent assortment
- genes from different traits are inherited separately from each other
- this allow for all possible combinations of gene to occur in the offspring
- if genes for separate traits are closely linked on a chromosome, they can be inherited together as a single unit (linkage)
Describe the law of independent assortment experiment
- Seeds: Round, wrinkled, yellow or green
- parental genotypes: RRYY and rryy
- results are di-hybrid giving following phenotypes:
—> round/yellow
—> round/green
—> wrinkled/ yellow
—> wrinkled/green
—> ratio of 3:3:3:1
Describe Hardy-Weinberg principle
- this principle allows the study of Mendelian inheritance in great detail
- this principle specifically addresses questions about recessive traits and how they can be persistent in populations
- the Hardy-Weinberg formula states (p+q)(p+q) = 1
—> p = the gene frequency of the dominant allele
—> q = the frequency of the recessive allele
—> This can also be stated as p^2 + 2pq + q^2 = 1
What is the criteria for the use of the Hardy-Weinberg formula?
- the population studied must be large.
- mating among individuals must be random
- mutations must not occur in parents or offspring
- there must be no migration, differential fertility or mortality of genotypes studied
Describe inheritance patterns
- describe how a disease is transmitted in families
- these patterns help to predict the recurrence risk for relatives
- in general, inheritance patterns for single gene disorders are classified based on whether the are autosomal or X-linked and whether they have a dominant or recessive pattern of inheritance
Describe autosomal dominant inheritance
- mode of genetic inheritance by which only one copy of a disease allele is necessary for an individual to be susceptible to expressing the phenotype
- autosomal dominant inheritance is often called vertical inheritance because of the transmission from parent to offspring
Describe autosomal recessive
- In autosomal recessive inheritance, two copies of a disease allele are required for an individual to be susceptible to expressing the phenotype
- typically, the parents of an affects individual are not affected but are genes carriers
Describe X-linked dominant
- only one copy of a disease allele on the X chromosome is required for an individual to be susceptible to an X-linked dominant disease
- both males and females can be affected, although males may be more severely affected because they only carry one copy of genes found on the X chromosome
Describe X-linked recessive inheritance
- two copies of a disease allele on the X chromosome are required for an individual with two X chromosomes (female) to be affected with an X-linked recessive disease
- since males only have one X chromosome, any male with one copy an X-linked recessive disease allele is affected.
Describe Cellular genetics
- human possess 46 chromosomes
—> 22 autosomes and 1 set of sex chromosomes
What is chromatin?
Nucleic acids an structural proteins called histones
What are heterochromatin?
Stains as dark bands
What is Achromatin?
- stains as light bands: consists of highly condensed regions that are usually not transcriptionally active
What is euchromatin?
- swollen form of chromatin in cells, which is considered to be more active in the synthesis of RNA for transcription
What is a locus?
- The specific location of a gene on a chromosome
- at each locus, there may be only one or several different forms of the gene, which are called alleles
What is hemizygous?
- refers to the condition when one chromosome has a copy of the gene and the other chromosome has that gene deleted or absent
Describe mitosis
- the process by which somatic cells divide to create identical daughter cells
- chromosomes are duplicated and one of each pair is passed to the daughter cells.
- quantitatively and qualitatively identical DNA is delivered to daughter cells formed by cell division
- Steps
1. Interphase: restring stage. No cells are dividing
2. Prophase: chromatin condenses to form visible chromosomes and the nuclear envelope starts to breakdown
3. Metaphase: the chromosomes are lined up along the middle of the nucleus and paired with the corresponding chromosome.
4. Anaphase: the cellular spindle apparatus is formed and the chromosomes are pulled to opposite ends of the cell. Cell becomes pinched in the middle and cell division starts to take place
5: telophase: the cell is pulled apart, division is complete, and the chromosomes and cytoplasm are separated into two new identical daughter cells.
Describe Meiosis
- process used to produce gametes or sex cells.
- results in 4 unique daughter cells.
- allows for great genetic diversity in organisms and controls the number of chromosomes within dividing cells
- gametes carry a haploid number of chromsomes
- occurs only in germinal tissues
Describe molecular genetics
- chromosomes are composed of long, linear strands of DNA tightly coiled around highly basic protein called histones
Describe DNA
- purines and pyrimidine
- helical structures of DNA which are formed by double stranded material
- codons and stop codons
Describe purines and pyrimidines
- nitrogenous bases that make up the two different kinds of nucleotide bases in DNA and RNA
What are codons?
- sequence of three nucleotides in the DNA strand for the genetic code for a specific amino acid
What are stop codons?
- sequence of three nucleotides that stop peptide from being translated form mRNA
What is the generative cell cycle?
- G0 - temporarily resting period, no cell division (2N)
- G1 - Cells produce RNA and synthesize protein (2N)
- S: DNA replication occurs (4N)
- G2: during the gap between DNA synthesis and mitosis; the cell continues to synthesize RNA and produce new proteins (4N)
- M cell division (2N)
Describe DNA replication
- complex process involving numerous enzymes, nucleic acid primers, various small molecules and the DNA helix molecule that serve as it own template for the replication process
- bidirectional manner
- semiconservative in nature
What are the steps of DNA replication?
- Sections of DNA must be uncoiled and two strands must be separated and kept apart. This is done by the enzyme DNA gyrase (opens coils) and DNA helicase (separates two strand of duplex DNA)
- DNA polymerase III can synthesize a new strand in the 5’ and 3’ direction on the leading strand
- Proteins (single-stranded binding proteins) interact with the open strands of DNA to prevent hydrogen bonding when it is not needed during replication
- DNA polymerase III also proofreads the addition of new bases to the growing DNA strands and can remove an incorrectly incorporated based, such as G paired to T
What is required for DNA replication to take place?
- there must be a short oligonucleotide (primers) that binds to the begging of the region to be replicated
Describe DNA repair
- mechanisms can detect the mistakes or changes and correct the actual DNA sequence
- most important mechanism is: proofreading ability of DNA polymerases
- occurs in both 5’ to 3’ and 3’ and 5’ directions and allows the polymerase to backtrack on a recently copied DNA strand and remove an incorrect nucleotide and inserting the correct on in place
- systems can recognize mismatched base pairs, missing nucleotides and altered nucleotides in DNA sequences
What are the major DNA repair systems?
- photo reactivation (PR)
- excision repair ( also called cut and patch repair)
- recombinational repair
- mismatch repair
- SOS repair
Describe photoreactivation of DNA
- thymine dimmers are formed after exposure to UV lights, the photoreactivation enzyme becomes active and enzymatically cleaves the thymine dimers.
Describe excision repair of DNA
- thymine dimers can be removed by this complex process
- disrupted section of DNA is removed
- cut is made on side of dimer that bulges out from rest of duplex DNA
- DNA polymerase I synthesizes a short replacement strand for the damaged DNA section
- old strand is removed by DNA polymerase I as it moves along the DNA and the newly formed DNA segment is ligated into place
Describe recombinant repairs of DNA
- uses correct strand of DNA to fill in strand where the error was deleted.
- Polymerase I and DNA ligase then fill in other strand
- when lost sections of DNA have been lost, the double strand breaks can be handled this method.
Describe mismatch repair
- activated when base pairing is incorrect and a bulge occurs in the duplex DNA.
- Mismatch repair enzymes are able to remove incorrect nucleotides and insert the correct ones.
- Methyl groups on adenine are used by mismatch enzyme systems to determine nucleotide is correct and which is a mistake
Describe SOS repairs of DNA
- used when DNA and cell damage occurs
- damage can occur through UV radiation, chemical mutagens and excessive heat
- gens of SOS response system must work in a coordinated manner to repair the damaged DNA through recombination events that remove the damage sections and replace them with the correct sequences
What are factors that affect the DNA replication?
- errors in the primary nucleotide sequence
- chemical and environmental factors
- ionizing radiation and strong oxidants
- ultraviolet (UV) radiation
- medications
Describe mutations in DNA
- any changes in the structure or sequences of DNA (physical or biochemical)
What is wild type?
- the original form of the DNA sequence, and the organism in which it occurs
What are mutagens?
The various chemicals and conditions that can cause mutations
What are the types of mutations?
- point mutation
- silent mutation
- transition mutation
- missense point mutation
- nonsense mutation
- insertion/deletion of of one more nucleotides
- frameshift mutation
Describe point mutation
- only one nucleotide in DNA sequence is changed
- included substitutions, insertions, and deletions
Describe the silent mutation
- occurs when a mutation happens that causes a change in the peptide sequence
- no mutation is seen at the phenotypical level
Describe transition mutations
- one purine is substituted for another purine, or one pyrimidine is substituted for another pyrimidine
What is a transversion?
When a purine is substituted for a pyrimidine or pyrimidine for a purine
Describe the missense point mutation
- results in a change in a codon, which alters the amino acid in the corresponding peptide.
- changes cannot be accommodated by the peptide while still maintaining its function
Describe a nonsense mutation
- results when a point change in one of the nucleotides of a DNA sequences causes one of the three possible stop codons to be formed
What are the 3 stop codes?
- amber (UAG)
- opal (UGA)
- ochre (UAA)
Describe insertion/deletion of one or more nucleotides in the DNA sequences mutation
- result of this type of mutation is a change in the triplet codon sequence and a subsequent alteration in the frameshift reading so that a large change in the amino acid sequence occurs
Describe insertion/deletion of one or more nucleotides in the DNA sequences mutation
- result of this type of mutation is a change in the triplet codon sequence and a subsequent alteration in the frameshift reading so that a large change in the amino acid sequence occurs
Describe the frameshift mutation
- results in a nonfunctional transferase protein that is seen phenotypically as the O blood group
What are the types of RNA?
- Ribosomal RNA (rRNA)
- Messenger RNA (mRNA)
- Transfer RNA (tRNA)
- small RNA molecules which have other various functions within the cell
Describe RNA
- single stranded structure
- uracil pairs with guanine
- substitutes deoxyribose with sugar ribose
- used to transmit genetic information from nucleus to cytoplasm in translated into peptides and proteins
- synthesized in a 5’ to 3’ direction, starts at 3’ end of coding strand
What are proteins the product of?
Transcription and translation
What is central dogma of molecular biology ?
The flow of genetic information from DNA to RNA to proteins
Describe rRNA
- RNA is translated
- RNA polymerase I transcibes rRNA
- most abundant and consistent form of the RNA in the cell
Describe mRNA
- the initial link between the information stored in DNA and the translation of that information into amino acids.
- it is this form that is transcribed from DNA that encodes specific genes
- RNA polymerase II transcribe mRNA
Describe tRNA
- involved in delivering amino acids to the mRNA bound on the ribosome
- functional areas
1. The anticodon: it consists of 3 nucleotides that hydrogen-bond to the correct site on the corresponding codon on the mRNA
2. 3’ hydroxyl end and binds an amino acid
Describe transcription
- the cellular process by which one strand of duplex DNA is copied into RNA
- begins when RNA polymerase II binds to the region upstream of a gene
- consensus sequence: used to position RNA polymerase properly for transcription of a gene starts in the correct position. This is referred to as promoter