Topic 7 - Prokaryotic and Viruses Flashcards

1
Q

what are prions?

A
  • prions are proteins that are misfolded relative to their normal structure.
  • they are able to induce similar misfolding in proteins that they come in contact with. (They are able to reproduce themselves with error, but lack other features of being alive)
  • a buildup of misfolded proteins can cause disease.

-prions from different species may induce disease if ingested; prions cannot be destroyed at normal cooking temperatures.

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2
Q

What is the first fossil evidence of life on earth of prokaryotes?

A
  • For 2.5 billion years ago
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3
Q

what are the two domains?

A
  • bacteria
  • archaea
  • only forms of life for 1.5 billion years.
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4
Q

Do prokaryotes dominate the biosphere numerically and are second to plants in total biomass?

A

True

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5
Q

where can prokayotes live?

A
  • they live in places where eukaryotes do and many places they cannot, such as oil sands.
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6
Q

Prokaryotic Diversity

A
  • the # of described species of prokaryote sis is much less than the number of described eukaryotic spp.
  • the # of prokaryote species and higher taxa are increasing very rapidly due to DNA- and RNA-based descriptions.

-because of this rapid increase in names, it is
difficult to get a count of validly described taxa

  • there are a total of 23865 valid spp. of prokaryotes.
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7
Q

how many phyla in domain bacteria?

A

40 phyla

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8
Q

how many phyla in domain archaea?

A

4 phyla

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9
Q

what is a prokaryote?

A
  • organisms whose cells lack a nucleus and other organelles.
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10
Q

what is the first feature of prokaryotes?

A
  • they do not have a nucleus.
  • nucleus = membrane-bound organelle
    containing genetic material structured as
    dense linear chromosomes

-pro = first/before
- karyon = kernel (i.e.,
nucleus; nucle = little nut )
– eu = true

  • instead have a diffuse, circular ring of
    DNA not enclosed by membrane
    – the nucleoid region
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11
Q

what is the second feature of prokaryotes?

A
  • in addition to nucleoid regions, prokaryotes have plasmids.

-plasmids are small rings of DNA containing a few extra genes.

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12
Q

what is the third feature of prokaryotes?

A
  • reproduction and transfer of genetic
    material in prokaryotes take several
    forms, none using mitosis or meiosis.
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13
Q

what are the different forms of reproduction?

A
  1. Binary Fusion:
    • new DNA synthesized almost constantly
      - when a chromosome duplicated, the cell splits

-fission rate depends on the environment, can be divided once every 20
minutes

  1. Transformation:
    • involves uptake of
      ‘naked’ DNA released from dead
      prokaryote by a living prokaryote
  2. Transduction:
    • involves the transport of
      DNA between prokaryote cells by
      viruses (bacteriophages [phag = eat]
      and prophages)*
  3. Conjugation:
    • when one
      prokaryote latches on to another with
      a string-like structure (called a pilus
      in bacteria) and transfers DNA
      i. One cell attaches its pilus to another and
      then retracts it, pulling cells together

ii. transfer of genetic material in bacteria*
is unidirectional, from pilus-producer to
receiver

iii. plasmids are often transferred during conjugation.

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14
Q

what are transformation, transduction and conjugation are modes of?

A
  • horizontal transfer of genetic material, and because of this antibiotic resistance can spread so rapidly.
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15
Q

what is horizontal?

A
  • means
    transfer between individuals
    within the same generation
  • individuals need not be
    related
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16
Q

what is vertical?

A

-means transfer
from parent to offspring
between generations
- e.g., binary fission

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17
Q

widespread use of
antibiotics has sped up
selection for —————— in most medically important bacteria.

A

resistance

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18
Q

what is the fourth feature of prokaryotes?

A
  • bacterial cell wall.
  • includes peptidoglycan (no cellulose in cell wall or chitin in fungi)
  • archaeans lack peptidoglycan.
  • cell wall prevents cell from exploding when
    placed in hypotonic solution:

– hypotonic = lower in solutes than cell contents
(hypo = below); water enters cell [low solute out of cell, and high solute in cell] –> LYSIS

– hypertonic = higher in solutes than cell contents
(hyper = above, beyond); cell wall usually doesn’t
prevent plasmolysis, when water leaves cell [high solute out of cell, low solute in cell] –> SHRINK OR PLASMOLYZE

– (lys = release, usually in the sense of dissolve)

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19
Q

How does a bacterial cell wall determine whether the cell is Gram + or Gram -

A
  • Gram + = have peptidoglycan wall in contact with
    external medium which traps purple stain
  • Gram - = have lipopolysaccharide layer outside of cell
    wall, and thus do not absorb stain readily
  • Gram - are more pathogenic, as out LPS layer can contain toxins also resist
    action of antibiotics
20
Q

what is the fifth feature of Prokaryotes?

A
  • they lack membrane enclosed organelles.-no nucleus, mitochondria,
    chloroplasts
  • however, prokaryotes may have structures that are highly complex.
21
Q

what is the sixth feature of prokaryotes?

A
  • prokaryotic smaller in size than eukaryotic cell.
  • prokaryotic are 1-5 micrometre
  • eukaryotic are 10-100micrometer.
22
Q

what is the seventh feature of prokaryotes?

A
  • many prokaryotic cells are motile, and they can move on their own.
  • they use a g flagella (flagellum = whip)
  • Prokaryotes perform taxes (plural) or taxis (singular)
    • movement away from or towards stimulus
      – e.g. positive phototaxis is movement towards
      light (light receptor)
      – note: motility and taxic behaviour not restricted
      to prokaryotes
23
Q

Do prokaryotes differ from eukaryotes in
having a higher diversity of metabolic
pathways? (True or False)

24
Q

what is metabolism?

A

-chemical pathways used by living organisms to build molecules (anabolism) or break down molecules to release energy (catabolism)

  • meta = change
25
what is anabolism?
- building up molecules using energy. -ana =up
26
what is catabolism?
- break down molecules to release energy - cata=down
27
what are the three needs for metabolic activity?
1. water 2. carbon (comes form co2 or other organisms) 3. energy (comes from sunlight, inorganic chemicals, organic chemicals. )
28
what is a phototroph?
- use light energy and co2 to make their own carbohydrates. -photo = light - auto=self -troph =eat.
29
what is a chemoautotrophs?
- use energy obtained by oxidizing inorganic chemicals, and CO2
30
what is a photoheterotroph?
- use light energy, but get carbon from organic molecules -hetero =different
31
what is chemoheterotroph?
- use organic molecules for both energy and carbon source
32
What are the two different linages of prokaryotes that are now placed in the rank of Domain?
1. bacteria (eubacteria, eu=true) 2. Archaea (Arch=ancient or orginal) **There are three domains but two of these are prokaryotic* (3rd is eukarya)*
33
How does Archaea differ from Eubacteria?
- RNA structure - archaea lack peptidoglycan in cell wall. - archaea do not respond to antibodies that inhibit eubacterial growth.
34
what are extremophiles?
- phil =love, prefer, attached to. - an organism that thrives or lives in extreme environments or conditions.
35
what re methanogens?
- they live in oxygen -free habitats. - in swamps, cow gut -produce methane as a waste product. -gen =to generate
36
what are halophiles?
- they live in very salty habitats. - halo = salt. - it can be any type of salt, dosn't just have to be NaCl.
37
what are thermophiles?
- live in very hot habitats. -therm=heat -many thermophiles are autotrophs.
38
what are the 5 major clades?
1. Proteobacteria 2. Chlamydias 3. Spirochaete 4. Gram + Bacteria 5. Cyanobacteria
39
What is Proteobacteria?
- large and metabolically diverse group of Gram– bacteria - include endosymbiotic mutualists* like Rhizobium (rhizos = root) a. libe in roots nodules of leguminous plants. b. fix atmospheric nitrogen. c. host plants gives Rhizobium carbohydrates - include causative agents of cholera and gastric ulcers, Escherichia coli a. e. coli harmless commensal in human intestine. b. tested in drinking water b/c of presence in fecal matter. c. some strains can be toxic.
40
what is chlamydias?
- they live only within the cells of animals. - no peptidoglycan in cell walls, perhaps because they live within other cells - common STD , can cause blindness
41
what is spirochaetes?
- quite long helical bacteria that swim by spiraling. - causative agents of syphilis (STD) and Lyme disease (bite from infected tick) - passed on from pregannt women to child
42
what is Gram + Bacteria?
- includes number of gram (-) taxa -include decomposers in soil and sources for many antibiotic - include mycoplasmas (any of a group of small typically parasitic bacteria that lack cell walls and sometimes cause diseases.), which are the smallest known cells - include Bacillus anthracis (anthrax), which can enter a resistant endospore state -include Clostridium botulinum, a Gram+ bacterium that causes botulism (disease caused by neurotoxins produced by bacteria)
43
what does type C toxin devastate?
- devastates waterfowl. - fly larvae can accumulate toxin by eating decomposing matter with C. botulinum -waterfowl that feed on larvae die
44
what is Botox?
- cosmetic agent. - a sterile lyophilized form of botulinum toxin type A
45
what is cyanobacteria (blue-green algae)?
- the only prokaryotes that produce oxygen through photoautotrophy, like plants -some species also fix nitrogen from the atmosphere -most cyanobacteria are benign (not harmful), but some contain toxins that impair liver function or act as neurotoxins
46
What are the ecological and economic importance of prokaryotes?
- vital decomposers in all terrestrial and aquatic systems -important producers of oxygen and fixers of nitrogen -some situations, prokaryotes rather than plants are primary producers that support food webs a. hydrothermal vents (bacteria in sea water) b. acid caves - many prokaryotes are beneficial inhabitants of eukaryotes (to an areas where eukaryotes occupy) - many prokaryotes cause diseases.
47
what is a Thermus aquaticus (“Taq”) ?
- it is an extremophile eubacterium from hot springs. - enzymes retain activity at very high temperatures used in PCR (polymerase chain reaction - produces millions of copies of a specific segment of DNA) to amplify DNA for sequence analysis