Topic 6: Evolution and You: Bacteria and Viruses Flashcards

1
Q

Parascitism

A

One organism benefits

One suffers

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2
Q

Commensalism

A

One organism benefits, the other is not affected

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3
Q

Mutualism

A

Both organisms benifit

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4
Q

Microbiome

A

The totality of microbes in an environment (can be a human)

3 enterotypes in human microbiome

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5
Q

What do bacteria do for us? (6 things)

How many kcals do mice need if they are in a sterile environment?

A

help

metabolism
physiology
maturation of immune system
energy balance
susceptibility to disease
behavior

Mice living in a sterile environment need 30% more kcals

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6
Q

Where do bacteria come from (in microbiome)

A

Babies get some in utero and continue to get some over the first few years

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7
Q

The appendix - function

and when did we evolve it/why?

A

Darwin thought this had been evolved and was a left over, no longer useful

Actually, likely evolved to repopulate the gut with good bacteria.

In primate evolution
Individuals lived in low density populations
Occasionally alone
Useful to have a reserve of bacteria in case of illness

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8
Q

The appendix evolution

A

Evolved in two independent times

for marsupials and for ancestors of mammals and rodents (lost in the lineages of tree shrews and lemurs)

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9
Q

Urbanization

A

Big increase in urbanization globally
Increased pop density and sanitation issues

Possible that appendixes are less useful today

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10
Q

Cholera

A

Drink infected water
Moves into small intestine
Grow flagella and go into intestinal walls
Reproduce

Illness - watery diarrhea

Lots of spread into place there has historically not been any. Due to human movement.

Haiti - free since the 1800s
Earthquake
Aid workers from Nepal
Not much infrastructure cos of hurricane Sandy
Big outbreaks
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11
Q

Problems with urbanization

A

Unfamiliar bacteria

Bacteria in the wrong place

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12
Q

Strep pneumoniae

A

Usually colonises human skin

In other places, skin abcesses, and other serious health conditions

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13
Q

Staph

A

Skin

MRSA exists

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14
Q

What has helped cut down infections (2 things)

A

Sanitation development

Antibiotics

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15
Q

Penicillin

A

Alexander Fleming observed agar plate around blue-green mold was clear of bacteria

Found that the mold produced a substance that killed bacteria and called it penicillin

Florey and Chain researched how to make larger quantities. A woman in Peoria, Illinois brought in a moldy cantaloupe.

Very fast to produce. By 1942 was enough to use on ww2. By 1943 was an antibiotic resistant strain

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16
Q

Natural selection and antibiotic resistence

A

Population mutates as normal
Introduce antibiotics
Some have resistant characteristics
The antibiotics create a selection pressure in favor of these genes
The frequency of these alleles will be greater in the next generation

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17
Q

3 ways antibiotics can work

A

Attack cell wall synthesis

Attack nucleic acid synthesis

Attack protein synthesis

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18
Q

Ways bacteria target antibiotics (3)

A

Drug modification - change the drug so it does not work

Drug degradation - break down the drug

Reduce accumulation -0 prevents bacteria getting inside or the build up of it

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19
Q

Bacterial plamids

A

Contain DNA, often of stuff that is important for survival

Can replicate independently of the bacterial chromatid

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20
Q

Horizontal gene transfer - bacteria

A

Donor makes a Philus and connects to recipient
Plasmid duplicates
Basses between the two cells
Both not have plasmid

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21
Q

5 ways bacteria gain antibiotic resistence

A

From other bacteria (horizontal transmission)

From viruses - gets infected but gains DNA

From dead bacteria

From the environment

From reproduction (fission)

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22
Q

Bacterial fission

A

Very fast (hours)
Asexual, all offspring would have resistant alleles
The generation time is also really fast so there is plenty of opportunity for mutation

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23
Q

Microbiome and antibiotics

A

Take antibiotics for an infection

Selection pressure, only bacteria with genes for resistance survive

In the process, good bacteria can also be depleted

These dead bacteria can be replaced by another species, altering the local ecology in your environment

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24
Q

There is lots of resistence

A

Bacteria find new methods of resistance quicker than we develop antibiotics.

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25
Factors impeding antibiotic development
Not profitable - only used for a little bit and we are discouraging their use. Lifestyle drugs offer better returns only 5/25 big drug companies still have programs
26
MRSA and Agriculture What has the EU done about this?
Higher levels of MRSA are observed in ppl near agricultural livestock operations. Because fresh air is pumped in for the animals and old air out with loads of stuff including bacteria EU and Scandinavia have all addressed this and forbidden the use in livestock of antibiotics to increase growth Aim for overall improvement of animal health and hygiene Selectively about what infections warrant treatment with antibiotics
27
Guidelines for abx use in humans
Take the full course Only prescribe when you KNOW its bacterial ie not viral Hard cos diagnosis is via symptoms so easy to confuse bacterial and viral
28
Avoid treating the wrong disease
When prescribed antibiotics have no effect on viruses, they do affect all other bacteria. Might cause issues. Provides a selection pressure for the bacteria.
29
Direct transmission
Person to person contact Eg Ebola/HIV Droplet transmission - sneezing Influenza and COVID-19
30
Large/small droplets
Large 5-10um are respiratory droplets Small under 5nm are respiratory nuclei
31
Indirect, Airborne transmission
Droplet nuclei from evaporated droplets or dust particles. Suspends virus or bacteria in the air and then it enters a new host after the last host has long left Eg TB, chicken pox, smallpox. measles
32
Vector
Indirect like mosquitoes Malaria
33
Waterborne
Indirect | Cholera
34
The balancing act for viral infection
Natural selection should favor a balance between virulence and transmissibility Fitness of virus depends on how virulent and transmissible it is
35
Scale
Outbreak is a sudden increase in the are above that expected based on recent xp Epidemic is when the term outbreak goes beyond a small or restricted area Pandemic is an epidemic that spread through a large region eg continents or worldwide Outbreak - your town Epidemic - your province Pandemic - countries across the world
36
Viruses have influenced human dna
Cos we have had them for so long many translocations
37
Why are viruses adaptable?: Simple construction
Viral genome can be DNA or RNA Protein coat or capsid Some have a lipid membrane or envelope They don't replicate themselves so need less DNA or equipment Fewer genes and equipment
38
Why are viruses adaptable?: Short generation time
DNA/RNA comes in small packets | Easily picked up and quickly transcribed or incorporated into the host genome (so reproduce fast)
39
Why are viruses adaptable?: High mutation rates
Especially in RNA viruses RNA polymerase has no proof reading ability So more frequent errors during copying Can make it hard to generate vaccines as the genetic sequence is always changing
40
Influenza viruses are divided into types based on
Their H and N proteins H let them into cells N let them out
41
Antigenic drift
In host species, viruses can undergo slow or limited evolution Over time, antibodies might not recognize their new forms. The antigens change
42
Seasonal flue and drift
As it moves from the south to the north, it mutates via drift, which is why the flu vaccine is updated 2x a year
43
Antigenic shift
Large changes occur because a cell is infected by multiple species of virus for example multiple species When this happens, people have no immunity to the new hybrid form
44
H1N1 2009 - swine flu
Bird virus and human virus combined in a pig cell with swine virus. Transmitted to human then human to human Was highly transmissible but not highly virulent
45
1918 Spanish Flu
Killed 2.5% of global population 3 waves in a year. 2nd was the worst which is odd because you would expect greater immune response Healthy young adults died Really fast. Infected people were asymptomatic and carrying out daily life then got sick and died Huge immune response which destroyed the hosts own cells
46
Ebola
Natural host is the fruit bat Got into humans either directly from a bat or via other mammals Early symptoms were not bad, late included GI bleeding and death.
47
How does ebola kill
Infects macrophages Release cytokines These recruit more macrophages and signal to increase the permeability of blood vessels Blood clots and leaks form in vessels Uses up all the coagulation proteins Abnormal bleeding in skin and elsewhere = fatal
48
Why was Spanish flu worse than Ebola
Ebola transmission requires close contact with person or body fluids
49
If Ebola is hard to transmit, why did it hit so bad?
Rapid urbanization of African countries but without: durable housing Clean water Sufficient living space Healthcare
50
How was Nigeria spared in Ebola?
Legendary doctor caught it and quarantined their only case | She dide from it
51
Challenges with a pandemic like Ebola
To control it 1 - recognize the illness 2 - prevent contact by quarantine/ppe/disposal of waste/proper burial
52
Covid
Bats are a reservoir Have passed to humans via many intermediary animals Has genetic similarity to bat coronavirus, the first sars-cov and mers-cov
53
Covid transmission in three studies
Using case studies to work transmission out 1) restaurant did a schematic of the place and worked out where the infected person had sat and where people got sick. Waiters who handled their plate did not get sick Showed contact was less of an issue and that it was unlikely to be airborne as many did not get sick. Most likely droplet. 2)Call center in south Korea First case on 10th floor, second on 11th. Dense areas around the 2nd case got hit hard 3) train analysis 2300 index pts 73000 contacts Made a map of where they sat and how long they were there for Found that proximity and time spent there were the two big things
54
COVID effects
Normally mild to moderate pneumonia In rare cases cytokine storm Brakes of immune system stop working massive effects on multiple systems
55
Things that influence covid transmission (4 things)
Environment - indoor/outdoor, ventilation, long term care facilities Contact pattern - Prox to index case, time of contact, duration of contact, activity Socioeconomic factors - poverty, job insecurity, long working hours, household crowding Host factors - Age, infectiousness, severity, host defense factors
56
Positivity rates
A high positivity rate indicates there are likely more cases than we know about This depends on the numbers of cases and tests done Can also be measure by the number of tests you need before a positive
57
Patterns of responses
Those who responded early did well but often increased later. Once there is a lot of cases, it is hard to do anything to stop it. Cannot be controlled without a vaccine.
58
Appx death rate
3%
59
Vaccines
Hard to make first of all Then hard to distribute: environment, infrastructure etc makes vaccinating enough people a challenge Ideally you get herd immunity when there is not enough hosts left for the virus and it burns out Without vaccine getting to here requires too many deaths
60
Until a vaccine
Limit contact, wear masks Limit travel
61
Bottom up methods to prevent viruses
Monitor across globe where people eat bushmeat Try to get them to not take already dead animals (as they might have disease) Get them to sample blood of each kill Can be analyzed