Topic 4: Genetic Info, variation + relationships Flashcards
Why is DNA a suitable molecule to carry genetic info?
- DNA is a very stable molecule, so it rarely changes (/mutates)
- DNA is a large molecule (polymer) so lots of info is carried
What reaction joins the 3 components of DNA together?
Condensation reactions
How do two adjacent nucleotides join together?
By a condensation reaction, forming a phosphodiester bond
What type of bond joins two opposite nucleotides together?
H bonds
How many different Amino Acids are there in lining organisms?
20
What ditermines the number + sequence of AAs in each polypeptide?
DNA base sequences, 3 DNA bases code for one AA
Why might a virus have a different % of adenine to thymine?
Viruses have single-stranded DNA
How is the structure of DNA related to its function?
- The sugar phosphate backbone prevents physical + chemical damage
- H bonds are individually weak, so DNA Helicase can break them
- Large molecule, holds lots of info
- Double-stranded, allows semi-conservative replication
- Complementary base pairs allows accurate replication
- Compact for storage
What is DNA like in Prokaryotes?
Shorter
Circular
No Histones (not associated with proteins)
ALL (non-viral) DNA IS DOUBLE-STRANDED
What is DNA in Eukaryotes like?
Protein-bound (histones)
Linear
V. Long
What are the components of chromosomes?
DNA (nucleotides) and associated proteins (Histones)
What is the DNA like in mitochondria and chloroplasts?
Same as prokaryotic DNA
What is the monomer of DNA?
Nucleotides
What is a gene?
A section of DNA with a sequence of nitrogen bases that carries a code
What do genes code for?
- Polypeptides
2. Functional RNA (tRNA and mRNA)
What is a locus?
The position of a gene on a chromosome
What is a chromatid?
2 Identical copies of the same gene found on a chromosome
What is a centromere?
Part of the chromosome that joins together two chromatids
What two processes, in order, are involved in creating polypeptides from DNA?
Transcription (DNA to mRNA)
Translation (mRNA to Protein)
What is the primary structure of protein?
The number and sequence of AAs
Why is the primary structure of proteins important?
It determines the location of Hydrogen, Ionic and Disulphide bonds which form between AAs.
The location of these bonds determines the secondary and tertiary structure of the protein
What are the names of the 4 nitrogen bases in DNA? Which ones pair up?
Adenine + Thymine,
Guanine + Cytosine
What is the formula for calculating the no. of amino acids that can be coded for when there are 4 nitrogen bases being read in groups of 3?
4 ^3 = 64
What would happen to the sequence of AAs in a polypeptide if the nitrogen base sequence was altered?
The AA base sequence in the polypeptide MAY change, it depends on the type of mutation because the genetic code is degenerate
Why is the genetic code said to be degenerate?
There are 64 possible triplet codes, but on 20 AAs, thus some AAs have multiple triplet codes.
eg TTT and TTC both code for Phe
What causes a stop codon?
Triplet codes that do not code for an AA, so no AA is added to the polypeptide chain - causing it to stop
What does degenerate mean?
One AA may be coded for by >1 triplet code
Why is the genetic code “non-overlapping”?
It is read every group of 3, not in between
Why is the genetic code universal?
The same DNA triplet codes for the same AA in (nearly) all organisms
What are mutations?
Changes to the nitrogen base sequence of DNA
What 4 factors cause DNA to mutate?
- Spontaneous mutations upon replicating
- Chemicals
- Biological agents
- Radiation
What is a frame-shift mutation?
A mutation which causes the code to be read differently after the point of mutation
What causes an insertion mutation?
Extra nitrogen bases being added
What causes a deletion mutation?
Nitrogen bases being removed
What causes a substitution mutation?
Nitrogen bases being replaced with different nitrogen bases
Which type of mutation may have no effect of the function of a protein? Why?
Substitution mutations
The genetic code is degenerate, so the same AA COULD still be coded for, so the corresponding protein will be the same
Why might a frame-shift (deletion/insertion) mutation have a greater effect if it is near the start of a gene?
The mutation may change the type of AA after the point of mutation (or cause a stop codon), so different bonds will form in different places, so the protein structure will change
Where can non-coding DNA be found?
In genes or between genes
What is the non-coding DNA found between genes called?
VNTRs (repeated units of the same base sequence)
What is the non-coding DNA found within genes called?
Introns (only in Eukaryotes)
What is the coding DNA found within genes called?
Exons (only in Eukaryotes)
Do porkaryotes have Introns and exons?
No
What is the genome of a cell?
The genetic material of an organism, consisting of DNA (but RNA in some viruses). Includes both genes and non-coding DNA
What is the proteome of a cell?
The entire set of proteins expressed by a genome, cell, tissue or organism at a certain time
In Transcription, what enzyme unzips DNA? How is this done?
DNA Helicase
Hydrogen bonds are broken
After DNA is unzipped by helicase in transcription, what happens next?
RNA nucleotides align themselves with one of the DNA strands (template strand), forming H bonds with the exposed bases
What RNA nucleotide is complementary to Adenine in DNA during transcription?
Uracil (instead of thymine)
Where does transcription take place?
Inside the nucleus of a cell
Where does translation take place?
In ribosomes in the cytoplasm or on the rough ER
How does mRNA leave the nucleus?
Via the nuclear pore
What enzyme joins adjacent RNA nucleotides together in transcription?
RNA polymerase
What happens to pre-mRNA before it leaves the nucleus?
It is spliced to remove introns
What does splicing do (transcription)?
Introns are removed (leaving exons) from pre-mRNA before it leaves the nucleus via a nuclear pore
Why does RNA polymerase only work in one direction?
- It is an enzyme
- Has a specific active site due to specific tertiary structure
- The active site only binds to complementary-shaped RNA nucleotides (the substrate)
- It would not fit going the opposite direction
How is mRNA adapted to its function?
- Small, can move of the the nucleus into cytoplasm, via nuclear pore
- Contains 4 nucleotides, carries the genetic code
- Unstable, so hydrolysed quickly when no longer required, ensures that the cell doesn’t waste energy making proteins it doesn’t need
What is a transcription factor?
A protein/molecule that binds to specific DNA base sequences (promoter region), controlling the rate of transcription
How do Transcription Factors (TFs) act? (3 steps)
- TFs move from the cytoplasm to DNA
- Bind to promoter region on DNA
- Allows/ blocks the binding of RNA polymerase
What is a promoter region?
A region of DNA that RNA polymerase and TFs bind to to animate transcription
How does transcription in prokaryotes differ from eukaryotes?
- mRNA directly produced in prokaryotes (no splicing as there are no introns)
- Splicing is required in eukaryotes, so pre-mRNA is involved
What is an intron?
A region of DNA within a gene that does not code for amino acids
What is splicing?
The joining together of exons to produce mRNA ready for translation in the cytoplasm
Describe the structure of transfer RNA (tRNA)
- Single stranded
- Folded back on itself, leaving 3 unpaired N bases
- The 3 unpaired bases form an anticodon, complementary to the codon on mRNA
- H bonds form where the RNA polynucleotides fold
A clover leaf structure
What is the function of tRNA?
To carry specific amino acids in translation, complementary to the codon on mRNA
Forms a tRNA amino-acid complex
What reaction causes a peptide bond to form?
Condensation reaction to form a peptide bond
What are ribosomes made of?
2 sub-units: One large, one small
Do ribosomes occur singly?
No. Can be connected in groups called polyribosomes, connected by ribosomal RNA (rRNA)
How is tRNA adapted to its function?
- Has amino acid binding site, allowing AAs to be carried in the cytoplasm
- Anticodon is complementary to codons on mRNA, the pairing of codons with anticodons determines the order of AAs
- tRNA is more stable than mRNA, so it can be used multiple times to pick up the same AA several times
What types of bond form in the secondary structure of proteins?
H bonds
What are the two types of secondary protein structure?
Alpha helix
Beta-pleated sheets
What 3 types of bond form in the tertiary structure of proteins, in order of strength?
H Bonds
Ionic bonds
Disulphide bonds
What is the structure proteins made up of >1 polypeptide called?
A Quaternary structure
How does the structure of tRNA differ form mRNA?
- tRNA has some hydrogen bonds form at the anticodon region (no H bonds in mRNA)
- tRNA has a cloverleaf structure, mRNA is linear, single stranded
Where does splicing take place?
In the nucleus
What happens during translation?
mRNA is read at ribosomes, allowing AAs to be joinde together to make a polypeptide
What are the 6 steps of translation?
- mRNA attaches to a ribosome and tRNA carries AAs to it
- The tRNA molecule carrying the AA joins to mRNA by complementary base pairing between the anticodon and condon respecively
- A second tRNA + corresponding AA joins in the same way
- The two AAs are joined by a peptide bond
- The first tRNA moves away, leaving the AA behind
- Another tRNA and comp AA join and the process continues until a stop codon is read and the polypeptide separates
What ‘tells’ the cell to start and stop translation?
The start and stop codons respectively
Why are individuals of the same species different from each other?
Variations in DNA (different alleles of the same genes)
Why is genetic variation important?
It may lead to adaptations the improve the chances of organisms’/species’ survival