Stem Cell Biology Flashcards
1892, stem cells are in between..
fertilised egg and committed germ cells
Stem cells have the potential to..
generate specialised tissue
copy themselves
Stem cells can be classified by: (3)
Age
Tissue of origin
Potency
Totipotent cells can..
produce all cell types of the body including throphoblast (placenta)
Multipotent cells can..
produce cell types specific to an organ or tissue
Pluripotent cells can..
produce cell types derived from the 3 germ layers
stem cells have a … cell cycle until…
Stem cells have a slow cell cycle until they become multipotent/restricted progenitors
External signals cause stem cells to..
speed up their cell cycle and differentiate into transit amplifying cells.
Stem cells expanded from a donor are called..
allogeneic stem cells
Autologous stem cells are..
from the same patient
As well as being used in therapies themselves, stem cells can also be used to..
Model new drugs
Teratomas are tumours which..
are non-invasive and contain multiple tissue types
Teratomas are produced from..
a single germ cell - from adult testes/ovaries
A single cell from a teratoma produced…when transplanted into another animal. This shows…
another teratoma. Shows that the cells are multipotent. They were termed embryonic carcinoma cells. They resemble pluripotent cells of blastocysts
ES cells have features of: (7)
Derivation from inner cell mass. Non-transformed. Indefinite proliferation/pluripotency. Stable diploid karyotype. Clonogenic Can be incorporated into chimeras Can be genetically manipulated
Functional assay for pluripotency
Transplant/inject cells into adult and teratomas form
In … the first ES cells isolated was from..
1981 from pre-implantation mice blastocysts. They formed embryos in vivo.
Stem cells grow with a layer of … which produce..
Feeder cells (carpet of fibroblasts) producing LIF (leukaemia inhibitory factor).
When LIF binds to its receptor, it causes transduction of..
Activation of G protein 130.
Activation of JAK.
Production of STAT3.
Causes pluripotency and self renewal.
Without LIF, what pathways are used
Absence of LIF activated the ERK pathway through SH2. This inhibits STAT3 so causes proliferation and differentiation.
For LIF to cause pluripotency or differentiation, it needs..
to be in serum.
LIF alone is insufficient for..
maintaining self renewal and blocking of differentiation
Factors in serum that LIF needs are:
BMPs
BMPs cause..
Smad and Id production, activating mesoderm and endoderm differentiation and blocking neuroectoderm differentiation.
STAT3 inhibits..
meso/endoderm fates and Smad
LIF and BMP work together by..
inhibiting meso/endo and neuroectoderm to sustain renewal
Mice ES colonies are … and … in appearance
Small and dome shaped
Human ES cells look
flat and defined
What is the human equivalence of LIFr-gp130
FGF2 and Activin-Nodal signalling
Mice and human ES cells have different: (3)
cell cycle and death rates.
LIFr and FGF2.
Surface antigens
Human ESC surface antigens are..
SSEA3, SSEA4 and TRA160
The only surface antigen mice have is..
SSEA1
Mice ESC renewal is dependent on LIF and..
ERK1 inhibitor
GSK3b inhibitor
Human epiblasts develop … before …
quickly before implantation of the embryo
Mice epiblasts are what shape.. When do they develop?
tubular. They develop later than human epiblasts, after implantation
The 2 states of ES cell are:
Naive
Primed
Naive ES cell features are..(4)
collected pre-implantation.
mouse ES like.
inner cell mass-like.
dome-shaped colonies.
Naive ES cells use Oct4..
distal enhancer
Primed ES cell features are..
collected post-implantation.
mouse epiblastic-like.
flat colonies.
Primed ES cells use OCt4..
proximal enhancer
Naive ES cells are better for..
understanding pluripotency and genetic modifications
Pluripotency stages are defined by..
a set of transcription factors expressed together in a careful balance
Transcription factors of pluripotency are:
Nanog
Oct4
Sox2
Transcription factors of pluripotency are all …. amino acids long and contain different …
300-350 amino acids long. They contain homeodomains
Sox2 has … for interactions with proteins
high motility groups (hmg)
Oct4 is the founding member of what family
POU transcription factor family
Oct4 is essential for … Upregulation causes … Normal levels cause … and low levels cause…
pluripotency.
Extra-embryonic endoderm and mesoderm.
Production of more ESCs.
Production of trophoectoderm.
hES were successfully obtained from an..
IVF generated human blastocyst. Induced teratomas in immunodeficient mice
Naive human ES cells cannot be captured as..
the time window is very short. Instead, primed ES cells have been undifferentiated
Human primed ES cells have been undifferentiated by inducing expression of Oct4 by what factors.. consisting of..
NHSM - LIF, TGFb1, FGF2, ERK1, GSK3, p38i, JNKi
NHSM factors cause primed ES cells to express..
pluripotency markers
Oct4 is expressed by different promoters in …and… ES cells.
naive and primed
Mouse epiblast SCs are characterised by low expression of pluripotency related genes:
Nanog, Rex2 and Klf4
naive human cells are more capable of growing as..
single cell clones with a shorter doubling time - good for scaling up production
Oct3/4 works in a …. with Cdx2 to..
reciprocal loop. represses trophoblast differentiation
Sox2 is needed in the..
early epiblast
without sox2, embryos fails to..
generate an epiblast, the embryo collapses
Both oct4 and sox2 are required together to..
form epiblast
Nanog is essential for…and was identified in 2 different experiments:
self renewal.
Seen by in silico screen and functional screen.
Self renewal with Nanog was observed in the presence and absence of LIF in ….. screens
In silico and functional
Nanog knockouts in ESCs show..
loss of Oct 4-pluripotency and differentiation into extra embryonic endoderm (completely).
When Nanog is overexpressed, what is not required?
LIF and BMPs
Pluripotent SCs show … of gene expression in populations
heterogeneity
Heterogeneity of pluripotent SCs was seen by tagging … with GFP, FACS and culturing cells. What was seen?
Nanog enhancers. After cells are cultured for 6 days, GFP+ and GFP- lines change.
Cells express certain amounts of .. and .. during different levels of commitment (for differentiation)
SSEA3 and TRA160
ESCs are triggered to differentiate in vitro (plastic without charge) by..
removing extrinsic conditions of self renewal
When ESCs are triggered to differentiate, how do they behave?
cells clump together and form aggregates called embryoid bodies
Embryoid bodies resemble..and have..(2)
gastrulation and early embryonic development. They show self organisation and axis formation
In vivo and in vitro, … activity is seen in embryoid bodies
Wnt activity.
Embryoid bodies are good since… however, there are difficulties controlling..
they are cheap to produce and generate 3 germ layers.
their aggregation, shape and size in a reproducible way
To change the shape of embryoid bodies, methods such as …. are used (2)
Hanging drop Controlled aggregation (plates with special geometry)
Embryoid bodies spontaneously form 3 different formations:
Cystic Bright cavity (cavitated) Dark cavity (dense)
cystic embryoid body structures are best at producing..
endoderm
bright cavity embryoid body structures show the best..and is the closest formation of..
organisation of the 3 germ layers, formation of a real embryo
dark cavity embryoid body structures show..
good production of the 3 germ layers
Oct3/4 causes expression of … and repression of…
activated expression of transcription factors such as Rox1.
Suppresses expression of Zfp42
Nanog is thought to suppress … to stop differentiation
GATA4/6 - induces extra embryonic endoderm
Nanog expression in the blastocyst is confined to the… Its expression is downregulation during…
inner cell mass.
implantation stage
Oct4, Sox2 and Nanog are lineage specifiers and suppress..
mutually exclusive fates.
Morphogen gradients influence …. to form specific cell types in embryoid bodies, eg…
cell lineage decisions.
Retinoic acid
Shh
Important aspects of growth factors to control during differentiating EBs:
Concentration
Time of addition
Substrates cells are grown on (laminin, fibronectin, collagen)
EBs are easier to manipulate during differentiation by…
plating cells as monolayers