Cancer Biology Flashcards
The major risk factor of cancer is..
Age
The majority of cancers are … causing..
Benign. These only cause harm when they expand and press on organs, and if they release high levels of hormones (thyroid adenoma)
Metastases of tumours cause ..% of cancer deaths
90%
8 hallmarks of cancer are:
- sustained proliferative signalling
- evasion of growth suppressors
- Invasion and metastasis
- evasion of immune response
- genomic instability
- resisting cell death
- inducing angiogenesis
- replicative immortality
Most tumours arise from …
epithelial tissue
hyperplastic tissues have..
excessive cell numbers
metaplastic tissues have..
abnormal cell types in wrong locations
dysplastic tissues are..
abnormal in size and shape
neoplastic tissues..
grow and invade other tissues
tumours can be heterogeneous as..
cells can acquire a new mutant allele within a population of cells
Limitations of mice models are:
Characteristics of mice/human tumours may be different.
Cancers may behave differently.
Time of onset is different (age).
The first tumour virus discovered was … by what experiment
Rous sarcoma virus. RSV was taken, grounded and filtrated from chicken and inserted into another chicken, which developed sarcoma.
In culture, tumour cells show 2 features:
Anchorage independent growth - tumour cells grow in semi-solid medium whereas normal cells can’t.
Altered morphology - thicker, no contact inhibition and rounded cells.
V-src and C-src in RSV possessed different cellular properties:
v-src acts as a potent oncogene in infected chickens.
c-src acts as a proto-oncogene in uninfected chickens.
The experiment proving that viruses did not cause human cancer
Carcinogens were thought to activate latent endogenous viruses in humans. When human cells and viruses were mixed, clusters of infectious outbreaks and isolation of viral particles from tumours were expected to form and be observed. This did not happen; virus did not cause cancer.
Oncogenes were first detected in NIH 3T3 mice fibroblasts in this experiment
DNA from cancer cells was added to fibroblasts. If a transforming gene (oncogene) is present, it may be incorporated into the genome and create transformed loci in culture. When these foci are injected into another mouse it causes tumour formation.
Injecting transformed foci to induce tumour formation showed that the origin of cancer was..
Not from viral infection or activation of viral genome. It shows that oncogenes are of cellular origins.
The first oncogene discovered was
c-Ras
The c-Ras sequence was discovered through experiments using..
bacteria attached to DNA fragments. Fragments which produce foci are collected and DNA is extracted. Repeated mixing and extracting of DNA will eventually collect a sample only containing tagged fragment. This was then run on Southern blot.
H-Ras and K-Ras DNA probes were seen to also bind to oncogenes in…
human bladder and colon carcinoma.
Many cancers carry mutations in Ras genes: … with mutations in residues: …
H-Ras, N-Ras and K-Ras. Mutations are found in 3 specific codons, with substitutions in residues 12, 13 and 61.
PDGF is platelet derived growth factor, and is a stimulator of..
fibroblast proliferation
Oncoproteins dictate what of a cell
The growth-stimulating machinery of a cell. They can delude cells into thinking they have encountered growth factors.
To find out what kind of molecule src was, antibodies were produced first and src was incubated with… what happened?
ATP. Src became phosphorylated, suggesting it was a protein kinase.
What does a protein kinase do?
It is an enzyme which removes Pi from ATP and phosphorylates other protein substrates, affecting downstream targets of a pathway
Src phosphorylates which residue in particular, and how much does this contribute to the cell’s phosphoproteins.
Tyrosine residues. This is odd as phosphorylated tyrosine - phosphotyrosine only contributes to 0.05-0.1% of a cell’s phosphoamino acids.
Cells transformed by src had phosphoamino acids levels of 1%, unlike other oncogenes. This indicates that tyrosine phosphorylation..
is used in mitogenic signalling pathways - induces proliferation
Growth factor pathways activate..
kinases to phosphorylate tyrosines (and other proteins) to cause proliferation
EGF binds to EGFR. How does the EGFR function?
It can work as a ligand independent receptor, meaning signals can be sent without the binding of EGF. It does this as a truncated receptor (monomerically).
How does EGFR function as a dimeric receptor?
Cytoplasmic domains of each unit phosphorylate each other - transphosphorylation
In cancer, EGFRs are..
overexpressed. Monomers move in the membrane and collide frequently, transphosphorylate, and emit growth signal
The discovery of EGF was done with purified growth factors and HeLa cancer cells..
EGF was on a solid and porous support and cancer cells were run through it in a column. The column was eluted and one protein was found - it had a similar sequence to src. This was similar to tyrosine kinase.
Ras acts as a binding protein for..
guanine and GTPase
The function of Ras was proven by what experiment using radioactivity
Radioactive displacement - a radioactive immunoprecipitate of GDP and Ras was mixed with other non-radioactive compounds to see if they would competitively bind to Ras. GDP and GTP bound.
An experiment using bacteria to show Ras function
2 groups of bacteria, 1 expressing cRas and 1 with a mutant Ras (HaRas) were incubated with radioactive GTP. Chromatography of cRas bacteria showed increasing amounts of GDP with time, unlike the mutant. Shows Ras is a GTPase.
Studies of Drosophila sevenless mutants and C. Elegans Let23 mutants discovered..
Enhancers and suppressors of a pathway (by epistatic analysis). Sequences showed similarities to growth factors, EGFRs, tyrosine kinases and Ras.
How was the gene in between tyrosine kinase and Ras found?
Genomic fragments were plated out and fluorescent tyrosine kinases were added and washed off. Colonies bind and DNA is extracted. This found GRB2 - homologous to SEM5 (Drosophila).
Ras is involved in multiple pathways, if one of …. components is affected, the whole pathway is altered.
3 components: Ras, GRB2 and tyrosine kinases
Oncogenic Ras differs from normal Ras by..
A singular base change - Glycine = proto-oncogene, Valine = oncogene
Most cancers show … effects unlike viral oncogenes….
recessive effects. Viral oncogenes show dominant effects.
To determine whether cancers are dominant or recessive, what was used
Sendai virus was used to fuse cancer cells with normal cells; all DNA in one nucleus. When fused cells were transplanted in xenograft mice, a recessive phenotype was seen, suggesting something was repressing cancer
Retinoblastoma is what kind of cancer
Eye. It can be sporadic or familial, usually unilateral. Only familial genes have bilateral retinoblastoma.
How was the recessive nature of the Rb gene studied
Knudson’s 2 hit hypothesis on a semilog graph; shows that there are 2 determinants for unilateral, but only 1 for bilateral. Familial already has ‘one hit’ present whereas sporadic cases need ‘2 hits’.
ReFLP is used to
find loss of heterozygosity and loss of tumour suppressor genes. EcoR1 will not cleave if mutated, creating different fragment lengths.
Synthetic lethality is when..
If 2 specific mutations are present together, cells result in death
Synthetic lethality has been used in cancers with what mutations and with what therapies
BRCA mutated genes (ds break repair) - PARP inhibitors
MSH1/2 (mismatch repair) - Pol beta, DNA polymerase
VHL (tumour distrib patterns) - kinase inhibition (CDK6, MET and MAP2K1)
4 important experiments of the cell cycle show us:
phase lengths
no/ of cells
how cycle is controlled
proteins needed
Cell cycle is good to visualise in Drosophila because..
They have a very fast cell cycle which is in syncytium
The length of cell cycle phases are calculated by..
Using radioactive phosphate to be incorporated into DNA backbone during replication. % of phosphate multiplied by doubling time = phase length
How long is doubling time in mammalian cells
22 hours
FACS is ..
fluorescent activated cell sorting
FACS can tell us … about the cell cycle and how
How many cells are in each phase. Cell are passed through a narrow path with lasers which detect the size and amount of DNA in a cell (by wavelength of light emitted).
FACS can be more accurate if done..
in 3D and bivariately. This takes density into account, making results more accurate.
How was control of the cell cycle discovered?
Through budding and fission yeast. Mutants of cell cycle were studied by using temperature sensitive mutant, arresting cells at certain points of the cycle. Genes were discovered by re-introducing them through plasmids
Cell cycle phase is easy to identify in yeast because..
Phases have morphological features: a bud forms in S phase in budding yeast
Using frogs identified proteins needed in cell cycle. How?
Centrifugation and extraction of concentrated frog cell cytoplasm was used to add DNA fragments to. Nuclei form around fragments and cell cycle can be observed in culture
Cells in any stage of interphase will enter mitosis in the presence of mitosis factors. This was discovered in 2 experiments:
Fusing interphase and mitosis cells with Sendai virus.
Injecting cytoplasm from a mature oocyte into another induced mitosis.
M-phase is induced by..
histone 1 kinase activity
Cell division is activated by..
cyclically synthesised proteins (cyclins)
The first studies of cyclically synthesised proteins was done in..
Yeast. Wee1 and cdc25 mutants were studied, and similar genes were screened for in mammals.
What are cyclins? (3 points)
They are proteins which are differentially expressed.
They allow transition into the next phase.
They bind to specific CDKs to be activated.
M phase is driven by which cyclin and CDK?
Cyclin B and CDK1
Cyclin A and CDK1/2 drives which cell cycle phase?
S phase
Which cyclin and CDK drive G1 phase of cell cycle?
Cyclin D and CDK4/6
G1/S is driven by cyclin and CDK..
Cyclin E and CDK2/1
How does CDK1 differ from other CDKs?
It is essential for cell division in the early embryo
What regulates CDK activity?
Activators are cyclins and inhibitors are CKIs. Activation is dependent of phosphorylation of threonine residues on T loops (activation loops) by CAKs (CDK activating kinase). There is also inhibitory phosphorylation.
CKIs such as ….. are produced in response to..
p57, p27 and p21 are produced in response to anti-proliferative signals
Growth factors control cycle partially through..
regulation of CKI function