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3.0 Microbiology > STDs/HVSs > Flashcards

STDs/HVSs Flashcards

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1
Q

What sample types do you usually see for STD screens

A

Charcoal transwabs are most common -> necessary for N. Gonorrhea

Gene Xpert swabs or first void urine are required for Chlamydia trachromatis investigation

IUDs might be sent down as part of a PID investigation

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2
Q

How does the charcoal transwabs work

A

They contain inorganic buffer which ensures the maintenance of bacteria without their overgrowth

This allows for the excellent recovery of both aerobic and anaerobic bacteria

Charcoal is necessary for the recovery of aerobes, anaerobes and fastidious organisms e.g. N. Gonorrhea

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3
Q

What plates do STD screens get?

A

NYC agar for gonorrhea
PDA for query thrush
Blood agar -> Gonorrhae will take days to grow

PCR for Chlamydia

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4
Q

How is MNYC agar incubated

A

5-10% CO2

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5
Q

What plates do HVSs get

A

Blood agar
PDA
NEO/FAA if necessary
-> if post operative or post partum a NEO is put up + Met disc
-> a FAA is put up if query anaerobes

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6
Q

What plates are put up for PID investigation

A

Blood
NYC (if query STD caused PID)
FAA
MacConkey
Extended blood agar
PDA if query thrush

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7
Q

What plates are put up if given an IUD?

A

Same plates as PID screen
Blood, FAA, MacConkey, Extended blood, NYC (? STD)

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8
Q

What samples get a gram stain?

A

All of our swabs get a gram stain other than rectal or pharyngeal swabs -> these tend to be too dirty

=> HVSs, STDs, PIDs all get grams

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9
Q

Talk about the use of extended blood agar

A

○ PID investigation, IUD infection
Extended incubation time to enhance growth of more fastidious organisms

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9
Q

Talk about Blood agar

A

○ Agar used for the cultivation of most pathogenic organism
○ Contains 5% defibrinated horse blood which is added to autoclaved basal/nutrient media
○ The blood enriches the media to support the growth of fastidious bacteria while inhibiting certain bacteria such as Haemophilus (require blood agar)
Useful for organisms which demonstrate haemolysis such as Strep species

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9
Q

How do you make a gram from the swabs?

A

Smush the tip of the swab onto the glass slides directly

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10
Q

Talk about MacConkey agar

A

○ Used in PID/IUD investigation mostly for GNBs such as the Enterobacteriaceae and Pseudomonas
○ A selective and differential medium, selective for gram negative bacteria and enteric/GIT bacteria, differential based on lactose fermentation
○ Made selective by bile salts and crystal violet which inhibit gram positives
○ Neutral red is the pH indicator
▪ Lactose fermenters cause a change in pH which turns the medium pink such as E. Coli
▪ Non lactose fermenter GNBs such as Pseudomonas aeruginosa grow a yellow colour
Sodium chloride maintains the osmotic balance of the medium

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11
Q

Talk about Potato Dextrose agar

A

○ Potato dextrose agar is a versatile growing medium for bacteria and fungi (yeasts and molds).
Often uses for candida species e.g. C. albicans in thrush

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12
Q

Talk about FAA

A

○ Anaerobes such as actinomyces during PID or IUD infection
○ Fastidious anaerobe agar capable of supporting most clinically significant fastidious anaerobes
○ Contains a wide range of additional substrates such as Pyruvate, Vitamin K, Cysteine, arginine etc
Grows organisms such as Bacteroides and Fusobacterium

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13
Q

Talk about NEO agar

A

○ + Met disc for post operative or post partum HVSs
○ Anerobic neo blood agar is used to grow anaerobic GNBS while preventing the growth of other organisms such as E. Coli, and aerobic bacteria such as staph etc
○ Neomycin can also be used aerobically for the isolation of Group A strep such as S. pyogenes and Group B strep such as S. agalactiae (S, aureus is susceptible to neomycin)
Basically neomycin blood agar works by suppressing the most common commensals such as S. aureus and E. Coli, by adding a metronidazol disc and incubating anaerobically you are ensuring only the growth of anaerobic bacteria

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14
Q

Talk about MNYC agar

A

○ A selective media for the isolation of N. gonorrhoeae and N. meningitidis
○ GC agar base supplemented with lysed or chocolatised horse blood with the addition of Oxoid Vitox
○ Made selective through the use of an antibiotic cocktail containing vancomycin, colistin, trimethroprim and yeast autolysate
▪ Vancomycin inhibits gram-positive bacteria
▪ Colistin inhibits gram negative bacteria including Pseudomonas species
▪ Trimethoprim inhibit Proteus
▪ Trimethoprin + colistin act synergistically to inhibit GNBs
▪ Yeast autolysate fulfils the CO2 requirement needed to enhance Neisseria growth which enhances both the size and number of colonies
○ The horse plasma, haemoglobin and proteose peptone provide nutrients for the growth of N. gonorrhoeae and N. meningitidis
○ Phosphate buffers the medium
○ Starch neutralises Neisseria toxin

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15
Q

What are the common organisms found in HVSs?

A

Beta Haemolytic Strep (S. pyogenes and S. agalactiae)
Fungi
S. aureus
Listeria
GNBs
Proteus

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16
Q

Talk about Beta Haemolytic Streps in HVS

A

▪ Such as S. pyogenes (Group A Strep) and S. agalactiae (Group B Strep)
○ S.pyogenes
® Group A Streps such as S. pyogenes can cause toxic shock syndrome
○ S.agalactiae
® Can only release a positive S. agalactiae after the sens has been done, if penicillin susceptible you can release early but if resistant you will have to wait for the full sens to be done
® Group B BHS like S. agalactiae cause infections during the 3rd trimester of pregnancy
* Usually screen for BHS during 3rd trimester so as to not pass infection on to baby through birth cannal -> treated with antibiotics
▪ Always check blood agar against the light for any signs of Beta haemolysis
All BHSs will go for sens

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17
Q

Why is listeria so important in HVSs

A

Can cause stillbirths if patient is pregnant

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18
Q

Talk about GNBs in HVSs

A

Often seen where there is disruption in the microbiome I.e. decrease in lactobacillus

19
Q

Talk about proteus in HVSs

A

▪ Will swarm the plate
▪ There will be a noticeable bad smell
Whole plate will be coated in a cloudy film or cloudy rings seen around the colonies

20
Q

How do you report the scanty growth of HVS plates and what should you do

A

If very scanty then incubate for an additional day

		▪ CA1: scanty growth in primary inoculum 
		▪ CA2: scanty growth in secondary inoculum CA3: scanty growth in tertiary inoculum
21
Q

Talk about fungi in HVSs

A

Candida species most common cause of thrush

	○ Very large white colonies across the plate
	○ Always keep any PDA positive plates in case the patient has recurrent thrush -> might want to carry out sens on it -> why recurrent -> resistant etc Can always do a wet prep if not 100% confidenf a colony is yeast etc
22
Q

What organism would expect to see on the gram stain of a HVS?

A

Lactobacillus -> GPBs

23
Q

Why are we concerned with lactobacillus in HVS gram stains?

A

○ Any disregulation in the microbiome results in a decreased in lactobacilllus and an increase in GNBs such as Gardnerella or Mobiluncus
○ The lactobacillus bacteria keep the cervix at the correct pH which keeps these GNBs at bay

24
Q

What organisms are responsible for BV?

A

GNBs such as Gardnerella or Mobiluncus

25
Q

How is HVS disregulation graded

A

▪ Grade 1/H1: normal -> lactobacilllus bacteria predominate
▪ Grade 2/H2: intermediate -> mixed flora of some lactobacillus + some GNBs
▪Grade 3/H3: abnormal -> predmoninantly GNBs with few/absent lactobacillus

26
Q

What does Grade 3/H3 HVS disregulation mean for the patient

A
  • Indicative of bacterial vaginosis
    * Presence of clue cells (epithelial cells covered in GNBs) -> very indicative of BV
    * Fishy smelling discharge etc
    * Treated with antibiotics + probiotics for the cervix
    Gardonella presence indicative of BV
27
Q

For what cohort of patients do we carry out HVS grading and why?

A

○ Grading is only carried out for women younger than 60 years old
○ For those 60+ everything seen on the HVS gram stain must be described
Women 60+ tend to have a very dirty gram stain or have very little hence there is no reason to grade the stain

28
Q

Other than lactobacillus disregulation what do we note on the HVS gram stain?

A

The presence of white blood cells

29
Q

What might cause increased white blood cells on a HVS?

A

Infection
Inflammation
Just the point in the woman’s menstrual cycle
Hormonal changes

30
Q

When during a woman’s cycle are you more likely to see WBCs on their HVS gram?

A

WBCs are increased from the menstrual phase to the follicular phase

WBCs reach highest levels around mid-cycle at approx day 14

WBCs decrease again from day 22 i.e. mid-luteal phase

31
Q

What hormonal changes make it less likely to see WBCs on a HVS gram stain

A

WBCs decrease after menopause due to a decrease in estrogen

32
Q

What should you do with a query N. gonorrhea on MNYC agar?

A

Carry out an oxidase test -> if + then
= Gonorrhea

33
Q

What are the criteria for a positive N. Gonorrheae

A

Four + different positives are necessary for diagnosis with Gonorrheae

Oxidase positive
MALDI positive
API positive -> displayed pattern must perfectly match that of Gonorrhea
Gram stain positive
AST positive

34
Q

Talk about the trends in Gonorrhea

A

Gonorrhea increasing
Resistant gonorrhea also increasing

35
Q

Why is it important to test all swabs in a Gonorrhae screen

A

Some swabs may be negetive from certain sites while other sites are positive

36
Q

Talk about reading the MNYC agar plates

A

If N. Gonorrhea positive it will usually be the predominant organism

Plates can be very dirty if a rectal swab has been used

If plates are left in air for too long or in the fridge the Gonorrhea will dry out

37
Q

How do we process Chlamydia

A

Chlamydia diagnosed through PCR
Chlamydia won’t grow on NYC agar
If PCR positive then we can try and culture for sens

38
Q

What might you see on a blood agar for an STD screen?

A

Beta Haemolytic Strep -> send for sens
GNBs -> coliforms
S. aureus -> send for sens

If plate is 3+ days old you might wee Gonorrhea on blood agar

39
Q

How would N. gonorrhea look on gram stain

A

Intracellular diplococci within the white blood cells

40
Q

What is the API Kit

A

Biochemical test used to confirm ID of N. Gonorrhea

41
Q

How does the API Kit work

A

▪ Biomerieux API KIT used for the identification of N. Gonorrhea and Haemophilus (wounds)
▪ Cards contain substrates for a series of biochemical tests
▪ Different organisms display different characteristic patterns of colour changes for each biochemical test
By comparing the produced colour pattern to that of known organisms we can identify an organism

42
Q

How do you use the API Kit

A

▪ You will need to put up 2 chocolate agars with your oxidase positive query vN. Gonorrhea
▪ Using these two plates you will make up a 4.0 MacFarland (heavy) inoculum
* Collect colonies onto a damp swab by swiping across the entirety of both plates
▪ Add the inoculum to each reaction well on the card
* Any test which is underlined is only fillled half way and mineral oil added ontop to create anaerobic conditions
▪ The card is incubated for 2 hours 10 minutes
▪ The colour change is read after incubation and assigned a code
▪ This code must perfectly match to the code of N. Gonorrhea to support a diagnosis
* Must match N. Gonorrhea and not just Neisseria species

43
Q

What are the most common bacteria in PID

A

invasive group A streptococcal disease (GAS)1 and toxic shock syndrome (TSS), due to Staphylococcus and Streptococcus spp,2–4 as well as to Actinomyces infections

Gardenella cause BV when there is an imbalance of Lactobacillus

STDs also cause PID

44
Q

what are the most common anaerobes in HVSs

A

Bacteroides species (GNB)
Gardnerella vaginalis

45
Q

What is the gram results of Gardnerella vaginalis

A

Gram-variable coccobacilli

46
Q

Most common GNB in HVSs?

A

Bacteroides species

47
Q

Why do we put up an extended blood agar plate for HVSs/PID etc?

A

Actinomyces

3.0 Microbiology (21 decks)

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