Statistics Flashcards
Define specificity
Proportion of patients without the condition who have a negative result
Formula for specificity
TN / TN + FP
Define sensitivity
Proportion of patients with the condition who have a positive test result
Formula for sensitivity
TP / TP + FN
Define positive predictive value
The chance that the patient has the condition if the diagnostic test is positive
Formula for positive predictive value
TP / TP + FP
Define negative predictive value
The chance that the patient does not have the condition if the diagnostic test is negative
Formula for negative predictive value
TN / TN + FN
Define likelihood ratio for a positive test result
How much the odds of the disease increase when a test is positive
Formula for likelihood ratio for a positive test result
sensitivity
/
(1 - specificity)
Define likelihood ratio for a negative test result
How much the odds of the disease decrease when the test is negative
Formula for the likelihood ratio for a negative test result
(1 - sensitivity)
/
specificity
Which significance tests are used on parametric data?
Student’s t- test (paired or unpaired)
Pearson’s product-moment coefficent (for correlation)
Which significance test is used on non-parametric data for comparing ordinal, interval or ratio scales of unpaired data?
Mann-Whitney U test
Which significance test is used on non-parametric data comparing two sets of observations on the same sample (e.g. before and after)
Wilcoxon signed-rank test
Which significance test is used to compare proportions or percentages on non-parametric data?
Chi-squared test
Which significance test is used for measuring correlation in non-parametric data?
Spearman, Kendall rank
Relationship between mean, median and mode in normal distributed data
mean = median = mode
Relationship between mean, median and mode in positively skewed data
mean > median > mode
Relationship between mean, median and mode in negatively skewed data
mean < median < mode
What is the goal of a phase 1 trial?
Determine pharmacokinetics and pharmacodynamics and side effects
Small study on healthy volunteers
What is the goal of a phase 2 trial?
Goals of 2a and 2b trials
How many patients?
Assess dosage and efficacy
2a = dosage 2b = efficacy
Small number of patients affected by disease
What is the goal of phase 3 trial?
Assess effectiveness
Large RCT comparing new treatment to old
What is the goal of a phase 4 trial?
Monitoring long term effectiveness and side effects
Formula for numbers needed to treat
1 / (absolute risk reduction)
How to calculate the absolute risk reduction
Control event rate - experimental event rate
How to calculate the control event rate
number who had outcome with control / total number who had the control
How to calculate the experimental event rate
number who had outcome with the intervention / total number who had the intervention
What is the usual outcome measure for a cohort study?
Relative risk
What is the usual outcome measure for a case-control study?
Odds ratio
What does endemic mean?
Persistent, usual or expected level of disease in a given population
How to calculate the relative risk
EER / CER
How to calculate the relative risk reduction or relative risk increase
EER - CER / CER
What is a type 1 error?
The null hypothesis is rejected when it is true
What is a type 2 error?
The null hypothesis is accepted when it is false
What is the name given to a phenomenon where if a variable is extreme on its first measurement, it will tend to be closer to the average on its second measurement
Regression
What statistical test to use on data with several groups?
ANOVA
What is ANOVA used for?
Comparing the variance of the means
Several groups of data
Normally distributed data
What is a spurious association?
Arisen by chance and not real
What is an indirect association?
Association is due to another factor (a confounding variable)
What is a direct association?
True association not linked by a third variable
What criteria are use to establish causation?
Bradford Hill Causal Criteria
How to calculate standard deviation
√variance
How to calculate standard error of the mean
standard deviation / √n