Solid Tumor Flashcards

1
Q

What gene is associated with PTC (2 of them)?

Follicular?

RAS is associated with?

A

PTC: BRAF V600E (not seen in benign or folicular)

PTC: RET-PTC 1-9; specific for PTC

Follicular: PAX8-PPAR gamma t(2-3)

RAS: PTC, Follicular Carcinoma and adenomas

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2
Q

EGFR mutation associated with TKI Resistance?

Other EGFR mutations that are less commen?

What can be amplifed to make EGFR inhibitors no longer functioning?

A

EGFR T790M; needs Tagrisso/osimertinib

Others: T854A, D761Y, and L747S

Also: MET amplification

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3
Q

In Diffuse astrocytoma’s with IDH mutations what other 2 genes are lost/mutated?

IDH 1 R132H makes?

A

ATRX lost and TP53 mutated

2-hydroxygluterate

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4
Q

Cancer syndromes tend to be caused by mutations in what?

What time of gene has more specific mutations associated with cancer?

A

Tumor Supressor Genes and inheriting one bad copy

Onocogenes: Many have multiple mutations and not just a hot spot like in an oncogene

Harder to turn off; can be activated

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5
Q

What codon KRAS is associated most with Colon Adeno?

Mechanism of KRAS mutation?

What percentage are BRAF V600 mutated?

2 Anti-EGFR drugs; do they work if KRAS is mutated?

A

KRAS exon 2 codon 12 and 13; WT=better prognosis

Increases affinity for GTP and decreased hydrolysis increasing activity of BRAF

8%; poor prognosis and decreased response

Anti-EGFR: cetuximab or panitumumab, (surface recepotor needs to be WT); NO!!

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6
Q

BCRA 1 and 2: Percent Jews who carry, non-Jews?

What tyoe of breast cancer do they see?

A

10% Jews and 2-3% non-Jews|
Medullary and Triple Negative

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7
Q

Lynch Colon Cancer what genes are most commonly mutated?

HNPCC histology; side?

What other test do you need to do if MLH1 and MSH2 are mutated?

If MSI-H what gene mutation is ruled out?

A

MLH1 and MSH2 (90%), MSH6 (5%), PMS2 (<2%)
Pooly differentiated and medullary type (highly specific 90%); Right

MSH1 methylation!

BRAF mutations in MSI-H are very rare

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8
Q

Lung cancer EGFR Mutation? What population?

Exon 20 resistance mutation; what other gene can be amplified?

Drugs for EGFR wild type?

A

Exon 21 L858R and Exon 19 (indel); Young female non smokers

5% get Exon 20 T790M; MET amplifications

Afatinib, Erlotinib, Gefitinib (TKI–needs WT EGFR)

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9
Q

ROS1 is a translocation with at what end?

Population?

Drug?

A

3’ end of ROS one with TKI; lots of partners
1% NSCLC, younger never smokers
Crizotinib

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10
Q

Lung ALK is what translocation?

Can you use EGFR drugs?

A

EML4-ALK; Alk on 2p; female, Asian, non-smokers

NO!!

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11
Q

Common melanoma mutations?
First Gen Drug to tx?

More recent drugs?

A

BRAF (V600E most common)
Vemerafernib for V600E and K; side effect can cause SCC

Dabrafenib (BRAF inhibitor) Trametinib (MEK inhibitor)

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12
Q

GIST mutations?
What exons?
What drug can target; what exon needs highest dose?

A

KIT

Exon 11 (juxtamembrane 70%), Exon 9 (extracellular); Exon 13/17
Imatinib (TKI); Exon 9 needs higher dose
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13
Q

GIST that are KIT negative tend to have what mutations?
Exons?

Drug to treat; what mutation has poor response?

A

PDGFRA 8%

Exon 12 (extracellular), Exon 14 (kinase), Exon 18 (kinase)

Imatinimb again; D842V

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14
Q

BRAF mutations seen in what type of thyroid cancer?

RET translocations also seen in?

PAX8-PPAR gamma t(2;3) seen in?

RAS mutations seen in?

A

PTC; highly specific!; found in 50% (not sensitive)

RET: PTC; (1-9); 1% in follicular adenomas

PAX8-PPAR g: Follicular cancer

PTC, onvential PTC and some follicular cell; Not specific to any one thing

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15
Q

IDH should make what product?

What mutation; product?

Commonly seen in what CNS issues?
IDH mutation prognosis?

A

Isocitrate to alphaketogluterate
Makes D-2hydroxyglutarate (bad); IDH1 R132H
Grade II-III astrocytomas and oligodenndrogliomas and seoncdary GBM

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16
Q

TERT mutations are associated with good or bad prognosis in CNS?

Are these mutations in gene or in promoter region?

A

Bad

Promoter region

17
Q

Trametinib is a drug for?

Erlotinib, Gefitinib and afatinib are what kind of drug?

Osimertinib is what kind of drug?

A

MEK inhibition

1st and 2nd gen TKI’s

3rd Gen TKI; anti-EGFR that can overcome p.T790M

18
Q

Uveal melanomas harbor mutation in what 3 genes?

FISH for bladder cancer looks at what chromosomes?

A

GNAQ, GNA11, and BAP1

3,7,17, 9q21

19
Q

MSS stable Colorectal cancer should be tested for what genes?

A

BRAF, KRAS, and NRAS

20
Q

Hep C IL28b; what mutation is better response to treatment?

Affects what drug?

A

Encodes IFN-lambda-3;

C: better response higher viral load but quicker to clear

T: Worse response; lower baseline load

Pegylated Interferon/Ribavirin

21
Q

Hep B procore mutation and effect?

A

G1896A; stop codon in procore regioin (B-G, rare A)

Acquisition of preC G1896A results in lower rates of chronic liver disease

Genotype A needs a C at 1858 so no loop forms

22
Q

What is a positive HER2 amplifcaiton (HER2:CEP17 ratio)?

Equivocal?

Negative?

A

FISH HER2 amplificaiton: FISH ratio >2.2 or HER2 gene copy greater than 6.0

FISH ratio 1.8-2.2 or HER2 gene copy 4.0-6.0; count recount

FISH ratio <1.8 or HER2 copy less than 4.0