Signal transduction Flashcards
Whats a common event in the signal transduction process?
Membrane translocation
Membrane translocation facts
- Volume=4000 um3
- Surface area=1200um2
- Consider that after translocation to the
- Membrane the protein is within the 5nm of the membrane (approx. diameter of a protein) then these proteins experience a volume of
- 1200X0. 005=6um3.that is a 700fold concentration! Binding and enzymatic reactions are dependent on the concentration of components
What does FRET show?
That proteins that thether to the membrane interact more
What does FRET stand for?
Fluorescent responance energy transfer
What does FRET depend on?
The the distance between fluorophores
When does FRET only occur?
When molecules are in close proximity e.g. 10 nm and they must have the right oritentation as well
What drives cell transformation?
Forced membrane localisation of PKB drives cell transformation
What mechanisms control protein interaction to the membrane?
- Phosphobinding motifs: SH2 and PTB
- Uniquitin binding motifs
- AKAP interaction domains (interaction between a cytosolic and a membrane bound protein)
What mechanisms control lipid interaction motif to the membrane?
- Phosphoinositide interacting motifs: PH, FYVE, PX, PHD and lysine arginine rich patches
- DAG binding motifs: C2 comain
- membrane interacting motifs: C1 domain
What mechanisms control lipid tether to the membrane?
- Myristoylation
- Prenylation
Whats Myristoylation?
Myristoylation is a lipidation modification where a myristoyl group, derived from myristic acid, is covalently attached by an amide bond to the alpha-amino group of an N-terminal glycine residue.
What does Fatty acylation mainly consist of?
The covalent addition of palmitic acid or myristic fatty acids to protiens
Tell me about fatty acylation and what happens in this process?
- covalent addition of the 14-carbon saturated fatty acid myristate to the N-terminal glycine residue through a stable amide bond.
- Thought to be irreversible.
Tell me the steps to co-translational myristoylation
- Removal of the N-terminal methionine
- Activation of myristic acid with CoA
- Coupling of the myristic acid to the glycine
- Gly-X3-X4-X5 (Ser/Thr/Cys) 6 where X represents most AA, except for proline, aromatic or charged residues in position X3
- This is co-translational myristoylation
Tell me the steps to post-translational myristoylation and its role in apoptosis
- Caspase mediated cleavage of Bid exposes a glycine residue
- Bid becomes myristoylated
- Lipid tether induces insertion into mitochondrial membrane
- Recruitment BAK to the mitochondrial membrane
- Cytochome C release
- Downstream apoptosis
Where does protein prenylation main occur?
Mainly occurs on CAAX proteins (this is a C terminal protein)
What do proteins containing a CAAX motif function as?
Proteins containing a CAAX motif at their carboxyl termini, in which ‘C’ is the Cys residue that functions as the isoprenoid attachment site, ‘A’ signifies any aliphatic amino acid, and ‘X’ denotes any of several amino acids.
How is protein prenylation initiated?
prenylation is initiated by the attachment of a 15‑carbon (farnesyl) or a 20‑carbon (geranylgeranyl) isoprenoid lipid to the Cys residue by protein farnesyltransferase (FTase) or protein geranlygeranyltransferase I (GGTase I), respectively.
In protein prenylation, how can proteins be further processed?
By Ras converting CAAX endopeptidase 1 (RCE1), which removes the -AAX residues
isoprenylcysteine carboxylmethyltransferase (ICMT), ‘caps’ the carboxyl group on the now carboxy‑terminal isoprenoid-modified Cys residue with a methyl group
What is the Ras protein important for?
Cell proliferation
What is
15 carbon farnesyl diphosphate (FPP)
and
20‑carbon geranylgeranyl diphosphate (GGPP)
both built from?
Both built from isopentenyl diphosphate (IPP)
During Prenylation and palmitoylation of RAS controlled membrane localisation, what is the prenyl group put on by?
farnesyl transferase or geranylgeranyltrasnferase
What are Ft-inhibitors developed for?
Tell me about this
Ft-inhibitors developed for the clinic
however RAS instead become modified with geranylgeranyl.
Statins used in clinic to control cholesterol levels. Metadata suggest that long-term statin therapy reduces stroke, some chronic inflammatory disorders, osteoporosis and several types of cancer and Alzheimer disease
Tell me about signal regulated membrane localisation
1. Single Lipid tethers not normally enough to induce stable membrane localisation.
2. Often requires other membrane binding domains.
A. Phosphoinositide interaction domain. Often polybasic regions.
B. Another tether such as a prenylation or palmitoylation
3. As the tether does not induce stable association this enables various control mechanisms to be used.
Why is Kras4B targeted to the PM?
By the interaction of its polybasic region with phosphoinositides
What are the classes of Ras?
H, N and K
What do H, N and K undergo?
H and N undergo Prenylation and palmitoylation to target them stably to the membrane
K only undergoes prenylation. it uses PBR for stable association at the membrane
Why is KRas able to attach to the membrane by H and N aren’t?
KRz has a polybasic region which means it can adhere to the membrane. H and N don’t have this
KRas has a serine residue which can be phosphorylated. this blocks the interaction of the polybasic tail with the membrane causing KRas to fall off the membrane and become inactivated
What control KRas localisation at the PM and downstream function?
A phosphor-switch
How does KRas lead to apoptosis?
- PKC is activated by bryostatin
- When KRas falls of membrane with group, it binds to the golgi and mitochondria and this leads to apoptosis
Activation of the farnesylation switch attenuates tumour growth in vitro and in vivo
Give me some background on the disease: Progeria syndrome such as Hutchinson- Gilford (HGPS)
- are caused by abnormal processing of the CAAX protein prelamin A
Background on disease
- Characterised by premature accelerated aging beginning between 6-12 months of age
- There are around 100 living patients worldwide at a given time
- Often fatal age of 13 with no known cure
- Mutations in a protein called Lamin. Lamin controls strength of nucleus and hold nucleus together and provide tensile strength. How it controls the strength can affect the downstream processes
FTase inhibitors can be used in the clinic to treat what?
HGPS
What are the 3 types of Lamins?
A, B and C
What do B type lamins maintain?
Isoprenylation
How are C type lamins produced?
As mature proteins without CAAX or clevage
How are A type Lamins cleaved?
What can sequestration be used to inhibit?
downstream signalling
Protein phosphorylation is a common event in signal transduction pathways. What are the stages to organelle specific sequestration?
- ER unfolded protein response: CHOP
- Lysome: TFEB
- Plasma membrane: TUBBY proteins
- Cytoplasm; Steroid hormones; FOXO factors
Notch in flies control wing shape and embryonic development
The notch signalling pathway in mammalian cells
(watch the YT vids close to exam season to understand notch properly)
- 4 different notch receptors in mammals (1,2,3 and 4)
- Have extracellular egf repeats
- Ligands are Dl1,3,4 and Dlk and Jagged 1,2
- Controls structure of organs and often mutated in tumours which causes downstream proliferation, could help with cancers
The regulation of protein phosphorylation is a major pathway downstream receptor activation that mediates cell specific output signalling
How can phosphorylation change protein conformation?
Phosphorylation can change conformation by either disrupting molecular interactions or by promoting them. Common event in protein kinase activation
Phosphorylation creates new binding sites for a phosphor-specific reader molecule that delivers the output
What do phosphorylation readers such as PIN1 induce?
Conformational changes
Protein phosphorylation induces diverse downstream inputs
Writer/ reader modules can be coupled to induce what?
Complex outputs
PTMS; what are they good for? its all a matter of states
PTM of the p53 tumour suppressor