Scaffolds of the cell Flashcards

1
Q

What are the 3 major components of the cytoskeleton?

A

Actin microfilaments
Tubulin microtubules
Intermediate filaments.
All filaments are made from smaller subunits.
The cytoskeleton is dynamic.

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2
Q

What are the roles of microtubules in cells?

A

Maintenance of cell shape.
Swimming and surface movement of fluids - cilia.
Formation of mitotic spindle.
Tracks for movement of vesicle, organelles, proteins.

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3
Q

What are microtubules made from?

A

Made from the protein tubulin.
Tubulin is a dimer of 100kDa made from a and B subunits.

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4
Q

What is the structure of tubulin?

A

3 a- genes and 8 B-genes.
Each tubulin can bind 2 GTP molecules (1 in each subunit).
Only the GTP on the B-tubulin is hydrolysed, giving the dimer polarity.

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5
Q

What is the structure of microtubules?

A

The dimers can assemble in head-to-tail fashion due to its polarity, and forms protofilaments.
13 protofilaments form in a ring structure to form a hollow microtubule.

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6
Q

Where else does polarity come from in microtubules?

A

There is a slight shift in alignment of protofilaments, because they are not lined up exactly.

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7
Q

What is the polymerisation of microtubules?

A

Tublin monomers form dimers.
Dimers polymerise into oligomers.
Oligomers grow into linear protofilaments and microtubules.
Microtubules elongate by reversibly adding dimers.

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8
Q

Why is there a lag at the start of polymerisation?

A

Initial forming of a- and b- dimers to form oligomers is rate limiting.
Once the core oligomers form, it forms a nucleus which the rest of the microtubule rapidly forms from.

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9
Q

Why is the MTOC important?

A

Microtubule organising centre contains pre-formed microtubule rings of oligomers.
So the cell can very quickly grow microtubules when needed.

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10
Q

What is dynamic instability?

A

Microtubules may grow steadily, and then shrink rapidly by loss of tubulin dimers from the positive end - the catastrophe.
This happens when GTP is hydrolysed to GDP.

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11
Q

Why is GTP hydrolysis important?

A

It means the cell can rapidly turnover old filaments by hydrolysing the GTP to GDP, which causes the microtubule to be unstable.

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12
Q

What are the classes of microtubules binding drugs?

A

Tubulin dimer binding
Tubulin polymer binding

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13
Q

What are tubulin dimer binding drugs?

A

Drugs bind to dimer and prevent polymerisation.
e.g. Colchine, Vinblastine, Nocodazole

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14
Q

What are tubulin polymer binding drugs?

A

e.g. Taxol, can bind to polymer, and stabilises the microtubule and stops it falling apart, and being turned over.

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15
Q

What is the use of Taxol in disease?

A

Taxol targets some cancers such as ovarian and breast, by targeting the mitotic spindles and preventing them from forming.

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16
Q

What is the use of Vinblastine in disease?

A

Prevents spindle forming and mitotic division.
e.g. in Hodgkin’s disease, histiocytic lymphoma, Kaposi’s sarcoma.

17
Q

What are microtubule-associated proteins?

A

MAPs are a family of proteins that bind to and stabilise microtubules.
Type 1 at the N-terminus of the protein.
Type 2 are at the C-terminus.

18
Q

What are the functions of MAPs?

A

MAPs binding speeds up polymerisation, facilitates microtubule assembly and stabilises microtubules.
The other end projects out and will bind to vesicles and other microtubules, and it can be regulated, often by phosphorylation.

19
Q

What is the role of actin filaments in cells?

A

Maintenance of cell shape.
Cell movement and chemotaxis.
Interaction with the environment.
Tracks for movement of vesicles, organelles and proteins.

20
Q

Where are actin filaments found?

A

Microvilli, adhesion band, cell cortex.
Filopodia, lamellipodium.
Stress fibres, contractile ring.

21
Q

What is actin made from?

A

Made up of sub-unit G-actin (globular actin).
G-actin is 42kDA in size, containing 375 amino acids.

22
Q

What are the subtypes of actin?

A

4 a-actin genes - muscle actin
1 B-actin gene - non-muscle
1 Y-actin gene - non-muscle

23
Q

What is the structure of actin?

A

Each monomer can bind to 1 molecule of ATP or ADP and hydrolyse it.
The actin subunits are polar and assemble head to tail with one another.

24
Q

What is the actin microfilament structure?

A

Actin monomers form a twisted string.
Has a minus end - the bottom, and plus end - top.
Smaller than microtubules - 7nm.

25
Q

What is the polymerisation of actin?

A

Actin subunits polymerise into oligomers, which then grow into filaments.
Formation of oligomers is slow, but once formed there is rapid growth - can speed up using preexisting filaments.

26
Q

What does phalloidin do to actin?

A

This toxin stabilises F-actin (filament actin) by locking adjacent subunits together, which kills the cell.

27
Q

What does Cytochalasin D do to actin?

A

This toxin binds the barbed end of F-actin and prevents polymerisation.

28
Q

What does latrunculin do to actin?

A

A toxin that binds to actin monomers and prevents them from being added onto filaments.

29
Q

What are actin binding proteins?

A

ABPs regulate actin filaments.

30
Q

What are intermediate filaments?

A

Less dynamic - so more used for maintenance of cell shape.
Made up of many different proteins - keratins, neurofilaments, lamins.

31
Q

What is the intermediate filament structure?

A

Monomers form coiled-coil dimer, with distinct N- and C- heads.
2 dimers pack together to form a staggered tetramer, which then pack together in 8s to form a rope-like filament.

32
Q

What is the comparison of mechanical properties of different filaments?

A

Actin filaments can withstand moderate force but are not easily deformed.
Microtubules are deformable but unable to withstand force.
Intermediate filaments are able to withstand high forces and are highly deformable.