Sara - MHC Binding, Polymorphism and Processing Flashcards

1
Q

How many different Class I molecules can an individual express?

A

Up to 6 different types

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2
Q

How many different Class II molecules can an individual express?

A

12

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3
Q

Describe the peptide binding to MHC
(4)

A

It is not highly specific

Unlike antibodies or T cell receptors

The MHC must be able to present a huge array of antigens to T cells

MHC undergoes promiscuous binding

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4
Q

What is meant by promiscuous binding

A

The ability of MHC to bind multiple different antigens and present them to T cells

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5
Q

What is the ideal length of a peptide for Class I?

A

9 amino acids long (between 8 and 10)

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6
Q

What happens if a longer peptide binds to the groove of MHC Class I?

A

It can be cleaved in the endoplasmic reticulum by exopeptidases

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7
Q

Give an example of an exopeptidase

A

ERAp

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8
Q

Give an example of an exopeptidase

A

ERAP

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9
Q

What does the MHC peptide require during peptide binding?

A

The peptide must contain specific amino acid residues:

  • at the amino and carboxy termini
  • at positions 2 and or 3 and 9
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10
Q

What does histocompatibility determine?

A

Determines whether cells in a tissue are seen as self or not

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11
Q

What is the region that codes for MHC in mice called?

A

The H2 region

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12
Q

What does MHC class III do?
(2)

A

Produces TNFa

Produces heat shock proteins

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13
Q

How many Class I molecules can be produced from a chromosome 6?

A

Three class I molecules

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14
Q

What must be done to antigens in order for MHC to use them?

A

The antigens must be processed into peptides -> between 8 and 10 amino acids long for Class I

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15
Q

What type of peptide fragments are generally used for Class I?

A

Endogenous peptide fragments

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16
Q

What type of peptide fragment are generally used for Class II?

A

Exogenous peptides

17
Q

What is meant by an endogenous peptide and how are they processed?
(4)

A

A viral peptide -> virus uses cell’s biological machinery to make it’s viral proteins inside (endogenous) the cell

Immunoproteosome enzymic subunits breaks these proteins down into peptides

Transporter associated with antigen processing (TAP) shuttles peptides to ER

MHC complex made and sent to cell surface via golgi apparatus

18
Q

Where does MHC loading take place?

A

In the Endoplasmic reticulum

19
Q

What is meant by exogenous peptides and how are they loaded into MHC Class II?
(4)

A

APC engulfs a bacteria (exogenous)

Phagosome and lysosome = phagolysosome

Bacterial peptides brought to ER for loading

MHC Class II expressed on surface of APC

20
Q

Name the alleles that code for MHC alpha chain

A

B, C and A

21
Q

What is the cytosolic pathway of antigen processing

A

The loading of MHC Class I molecules with endogenous peptides

22
Q

In the endogenous pathway of antigen presentation in MHC Class I, what breaks down viral peptides?

A

Immunoproteosome enzymic subunits breaks these proteins down into peptides

23
Q

What does TAP stand for?

A

Transporter associated with antigen processing

24
Q

How is the immunoproteasome shaped?

A

Barrel shaped

25
Q

How can B cells undergo antigen presentation?

A

Via receptor mediated endocytosis (not phagocytosis)

26
Q

During the processing stage, what is the main difference between the endogenous and exogenous presentation of peptides?

A

In the exogenous pathway, after phagocytosis/endocytosis the MHC Class II is sent to the membrane bound vesicle containing the peptide (CD74 tells the MHC where to go)

27
Q

List the three MHC Class I molecules

A

HLA-B, HLA-C, HLA-A

28
Q

Where do the alpha and beta chains of MHC Class II come form?

A

Coded by alleles on the short arm of chromosome 6 (other end to the MHC Class I)

29
Q

Describe the alleles that code for MHC Class II a and B chains?

A

They are both polymorphic genes (unlike MHC Class I)

30
Q

How many regions are there to the alpha chain of MHC Class I?

A

2 regions (a1, a2)

31
Q

How many regions are there to the B chain of the MHC Class II?

A

Two regions (B1, B2)

32
Q

What is the preferred peptide size for MHC Class II?

A

13-18 amino acids

33
Q

Why can only some cells express MHC Class II?
(3)

A

MHC Class II presents antigens to Helper T cells (CD4+)

Helper T cells are responsible for releasing a lot of cytokines to trigger other cells

If all cells could express MHC Class II we would have a cytokine storm and die

34
Q

What are the three alleles that code for the alpha and beta chains of MHC Class II?

A

DB, DQ, DR (each of these loci code for an alpha and a beta chain)

35
Q

How many class II molecules can you have?

A

12