Rapid Review 4 Flashcards
type 1 Crigler-Najjar has *** UGT activity
has NO UGT activity
type 2 Crigler-Najjar has *** UGT activity
has SOME/REDUCED UGT activity
how do Gilbert and Crigler-Najjar bilirubin levels compare?
Gilbert: only slightly increased (3-6)
CN type 1: highest bili (>20)
CN type 2: intermediate (5-20)
(unconjungated bili)
pure red cell aplasia is a paraneoplastic syndrome related to what tumor?
thymoma
what mutation is associated with AML with maturation?
t(6;9) DEK-NUP214
[you have to be ~mature to do 69]
what labs favor cholestatic overr hepatocellular jaundice?
alk phos >>> transaminases
cirrhosis SPEP characteristics
beta-gamma bridging & low albumin
broadly, which method do you use for hematocrit?
conductometry
TTP is an auto-Ab to what
ADAMTS13
what blood product should you use in TTP?
cryo-poor plasma
why should you use ~this blood product~ in TTP?
cryo-poor plasma
bc it has ADAMTS13 (vWF-cleaving metalloprotease)
which worm is a/w megaloblastic anemia?
diphyllobothrium latum
CD markers in
T-ALL vs ATLL
T-ALL: CD4+/8+ sCD3-/cCD3+ [4 & 8 double positive makes it TALLer]
ATLL: CD4+/8- CD3+ popcorn cells [eating popcorn 43 times in atlanta]
mutation in Langer-Giedion
del8q24
what level of sweat chloride is suggestive of cystic fibrosis?
>60 mmol/L
mutation in Wilson disease
ATP7B
what is the gold standard for diagnosing Wilson disease?
elevated hepatic copper
are these low or high in Wilson disease?
ceruloplasmin
urinary copper excretion
LOW ceruloplasmin (can appear normal d/t inflammatory states [APR]) HIGH urinary copper excretion
what pathway does Cowden syndrome impact?
mTOR pathway (PTEN in 85%, PIK3CA, AKT1)
inheritance of Cowden syndrome
auto DOMINANT
inheritance of Peutz-Jeghers syndrome
auto DOMINANT
mutation in Hartnup disease
SLC6A19
auto recessive
what’s the specific weird lab value in Hartnup?
increased urinary tryptophan
what is the problem in PKU/phenylkaptonuria?
phenylalanine hydroxylase deficiency
auto recessive mut in PAH gene on chrom 12
what is the problem in benign hyperphenylalaninemia?
deficiency of pterin-4a-carbinolamine dehydratase (altered BH4 cofactor)
what is the inheritance of ornithine transcarbamylase deficiency?
x-linked recessive
(complete or partial lack of ornithine transcarbamylase)
[urea cycle]
what is the problem in maple syrup urine disease?
BCKD deficiency: branched chain keto acid dehydrogenase
genes: BCKDHA, BCKDHB, DBT
auto recessive
what amino acids does BCKD break down?
leucine
isoleucine
valine
(LIV)
what is the deficiency in tyrosinemia type I?
fumarylacetoacetate hydrolase (FAH) deficiency
last step in tyrosine breakdown
what is the inheritance of tyrosinemia type I?
auto recessive
how do you diagnose tyrosinemia type I?
elevated succinylacetone in urine
what malignancy is tyrosinemia type I a/w?
HCC
what is the disease with “sweaty feet” odor?
isovaleric acidemia :(
what is the problem in isovaleric acidemia?
isovaleryl-CoA dehydrogenase deficiency
what is the disease with “boiled cabbage” odor + fetid breath?
hypermethioninemia
what is the issue in hypermethioninemia?
methionine adenosyltransferase deficiency (buildup of methionine > demyelination)
what is the disease that is aka fish-odor disease?
trimethylaminuria
what is the issue in trimethylaminuria/fish odor disease?
mutations in flavin monooxygenase 3 (FMO3) gene
buildup of trimethylamine
aka fish odor disease
Fish odor - Flavin monooxygenase
what is the mutation in hyperhomocysteinemia?
C677T mut in MTHFR [methylene tetrahydrofolate reductase]
which inborn error of metabolism is a/w an increased risk of thrombotic disorders?
hyperhomocysteinemia > elevated homocysteine causes endothelial cell toxicity and disrupted vascular hemostatic mechanisms
what are the 3 peroxisome biogenesis disorders, in order of severity?
least bad: Refsum disease (PHYH mut)
middle bad: neonatal adrenoleukodystrophy (ABCD1 mut)
worst: Zellweger syndrome (PEX mut)
which peroxisome biogenesis disorder can be treated with diet?
Refsum disesase
which peroxisome biogenesis disorder is a/w Leydig cell damage?
neonatal adrenoleukodystrophy
what is like, the core issue in peroxisome biogenesis disorders?
buildup of very long chain fatty acids (Refsum is phytanic acid specifically)
what is the mode of inheritance of the glycogen storage diseases?
all are auto recessive EXCEPT
TYPE IXa
what’s the eponym
type I GSD
von Gierke’s
what’s the deficiency
type I GSD
G6PC mut > glucose-6-phosphatase deficiency
what will TTP look like on a vWF gel?
increased high-molecular-weight multimers
vWD 2M
decreased ability of vWF to bind to GPIb receptor on plt (this is the opposite of 2B)
normal multimers on gel
vWD 2N
mutated vWF-factor VIII binding site > vWF can’t protect factor VIII from degradation (increased factor VIII clearance) > factor VIII levels fall
normal multimers on gel
vWD 2A
small, less active vWF bc large multimers can’t assemble
No HMWM or IMWM
only has LMWM on gel
vWD 2B
increased affinity of vWF for plt GPIb/V/IX (on plt) > rapid vWF clearance & low plts (this is the opposite of 2M)
No HMWM
Has IMWM and LMWM on gel
vWD type 3
NO vWF!
gel has an empty lane
which von willebrand disease types are quantitative?
type 1 and type 3
which von willebrand disease types are qualitative?
type 2A, 2B, 2M, 2N
which vWD can you NOT give DDAVP to?
type 2B
2B has increased affinity btwn vWF and GPIb > so you’ll just keep using up all your plts and worsen thrombocytopenia
what makes vWF?
endothelial cells & megakaryocytes
where is vWF stored?
endothelial cell: Weibel-Palade bodies
plts: alpha granules
3 normal functions of vWF
- bind to collagen + plt GPIb/V/IX complex > plt adhesion
- bind to plt GPIIb/IIIa > increased plt aggregation
- bind to FVIII > prolong half-life of FVIII
what is the gold standard for measuring vWF activity?
vWF:RCo
asks “how well does vWF agglutinate plts in response to ristocetin?”
what does vWF:Ag test?
measures amount of vWF present, via LIA or ELISA
what should you suspect if vWF activity (vWF:RCo) is decreased out of proportion to the decrease in vWF:Ag?
so RCo/Ag <0.5-0.7
type 2 vWD (esp 2A, 2B, 2M)
which vWD are auto recessive?
2N and 3
which vWD are auto DOMINANT?
1, 2A, 2B, 2M
what chromosome is the vWF gene on?
chromosome 12
what should you be thinking of if they give you a child with an abdominal mass and like, flow?
Burkitt
***multiple nucleoli, vacuolated cytoplasm***
CD19/20+, but also CD10+!!!
which glycogen storage disease is the most common one?
type I: von Gierke’s
which glycogen storage disease is the most severe?
type II: Pompe’s
what’s the eponym for type II glycogen storage disease?
Pompe’s
(pompeii has 2 ii’s)
what is the defect in Pompe’s?
alpha-1,4 glucosidase deficiency
aka
acid maltase deficiency
what’s the eponym for type III glycogen storage disease?
Cori’s/Forbes
what’s the defect in Cori’s/Forbes?
debranching enzyme deficiency
AGL mutation
(ABCD: andersen’s branching cori debranching)
what’s the eponym for type IV glycogen storage disease?
Andersen’s
what’s the defect in Andersen’s?
branching enzyme deficiency
(ABCD: andersen branching, cori debranching)
GBEI mutation
what is the eponym for type V glycogen storage disease?
McArdle’s
(ardle has 5 letters)
what’s the defect in McArdle’s?
muscle phosphorylase deficiency
(think of the IHC duh)
what’s the eponym for type VI glycogen storage disease?
Hers’
what’s the defect in Hers’ dz?
liver phosphorylase deficiency
PHKA2 mutation
what’s the eponym for type VII glycogen storage disease?
Tarui/Tauri
what’s the defect in Tarui’s?
muscle phosphofructokinase (pfk)
(causes deficiency of M subunit > myocytes & rbcs can’t use carbs for energy)
what’s the defect in type VIII glycogen storage disease?
hepatic phosphorylase kinase deficiency
what’s the eponym for type VIII glycogen storage disease?
there isn’t one, lololol
what’s the eponym for type IX glycogen storage disease?
there isn’t one AGAIN
what’s the defect in type IX glycogen storage disease?
deficiency of phosphorylase b kinase
alpha subunit: PHKA1 (muscle) and 2 (liver)
beta subunit: PHKB (muscle & liver)
gamma subunit: PHKG2 (liver)
i have no idea if i need to know this
what’s the defect in type XI glycogen storage disease?
absent GLUT2 transporter
what’s the eponym for type XI glycogen storage disease?
fanconi-bickel
which glycogen storage disease is inherited in an autosomal recessive fashion?
PHKA1 & 2: x-linked recessive
PHKB & G2: auto recessive (like the rest of the GSDs)
which GSD has heart failure and death within 2 years?
type II: Pompe’s
which GSD has liver cirrhosis & death within 5 years?
type IV: andersen’s
which GSD has exercise-induced rhabdomyolysis & renal failure 2/2 myoglobinuria?
type V: McArdle’s
which steps of heme synthesis happen in the mitochondria?
First step (ALAS)
Last 3 steps (CPO, PPO, FECH)
which steps of heme synthesis happen in the cytosol?
ALAD
PBGD
URO3S
UROD
(steps 2-5)
order of heme synthesis enzymes
- ALAS
- ALAD
- PBGD
- URO3S
- UROD
- CPO
- PPO
- FECH
disease name & inheritance
aminolevulinic acid dehydratase (ALAD) deficiency
ALAD porphyria
disease name & inheritance
porphobilinogen deaminase deficiency
acute intermittent porphyria (AIP)
auto DOMINANT
what cofactor does ALAS need?
vitamin B6 (pyridoxine)
which forms of ALAS control hgb synthesis and where?
ALAS2: bone marrow
ALAS1: hepatocytes
feedback inhibition: heme blocks ALAS from entering mt
what is ALAD extremely sensitive to?
LEAD
(this also inhibits FECH)
how do you die of lead poisoning?
CNS damage
(it is NOT buildup of ALA d/t ALAD inactivation)
what is the most common porphyria?
acute intermittent porphyria
(PBGD def)
what’s another name for PBGD (porphobilinogen deaminase)?
hydroxymethylbilane synthase
(this step forms hydroxymethylbilane)
if you suspect AIP, what should your first test be?
urinary porphobilinogen
and then? total porphyrin testing
what is a normal level of porphobilinogen excretion?
<4 mg/day
disease name & inheritance
uroporphyrin III synthase (URO3S) deficiency
congenital erythropoietic porphyria (no proto)
auto recessive
disease name & inheritance
uroporphyrinogen decarboxylase (UROD) deficiency
porphyria cutanea tarda
80% acquired, 20% inherited auto DOM
disease name & inheritance
coproporphyrinogen oxidase deficiency
hereditary coproporphyria
auto DOMINANT
disease name & inheritance
protoporphyrinogen oxidase deficiency
variegate porphyria
autosomal DOMINANT
disease name & inheritance
ferrochelatase (FECH) deficiency
erythropoietic protoporphyria
auto DOMINANT with poor penetrance
where does most transferrin come from?
99% comes from the digestion of old RBCs!
which porphyrias are the erythropoietic ones?
they have erythro in the names
erythropoietic protoporphyria (FECH)
congenital erythropoietic porphyria (URO3S)
(the rest are hepatic)
which porphyrias are autosomal recessive?
ALAD porphyria (ALAD)
congenital erythropoietic porphyria (URO3S)
which porphyrias result in photosensitivity & why?
def in UROD, CPO, PPO, or FECH
[anything after URO3S]
d/t buildup of tetrapyrrole rings
which photosensitive porphyrias are delayed & which are immediate & why?
delayed: uro & copro buildup: UROD & CPO def
immediate: proto buildup: PPO & FECH def
which porphyrias are acute?
AIP (PBGD)
variegate (PPO)
coproporphyria (CPO)
ALAD def
which porphyrias are non-acute?
congenital erythropoietic porphyria (URO3S)
cutanea tarda (UROD)
erythropoietic protoporphyria (FECH)
which aspergillus spp are uniseriate?
fumigatus
which aspergillus spp are biseriate?
niger
terreus
flavus
which aspergillus species have circumferential phialides?
flavus & niger
which aspergillus species have NON circumferential phialides?
fumigatus (single layer)
terreus (double layer)
what fluid should you use for EBV dx?
SALIVA
what thyroid neoplasm is a/w amyloid?
medullary thyroid cancer
what tumor marker should you use to monitor medullary thyroid cancer?
calcitonin
WBC count for adequate leukoreduction in a whole blood unit
fewer than 8.3 x 105
explain the dilute Russell viper venom test
- RVV activates factor X > Xa
- RLS: Xa + prothrombin/factor II + factor V + phospholipid > thrombin
if there’s not enough phospholipids (such as in the presence of antiphospholipid antibodies), then it won’t be as available for thrombin creation, and clotting time is prolonged
[less phospholipids > less thrombin > less clotting > prolonged clotting time]
what syndrome presents with livedo reticularis + multiple embryo losses?
(+/- clots, preeclampsia, placental abruption)
antiphospholipid antibody syndrome (APLAS)
how do you test for a lupus anticoagulant?
what is the principle screening test?
Staclot-LA test
or
dRVVT (this is the principle one)
what is Staclot-LA test?
hexagonal phase phospholipid neutralization test
if you have lupus anticoagulant/antiphospholipid antibody in a tube, and you add phosphatidylethanolamine > prolonged PTT
if you have antiphospholipid antibody syndrome (APLAS), then what specific antibodies might you have?
- lupus anticoagulant
- anticardiolipin antibody (MOST COMMONLY MEASURED)
- anti-beta-2-glycoprotein-I
what causes epidemic typhus?
Rickettsia prowazekii
what causes murine typhus?
Rickettsia typhi
what causes sylvatic typhus
Rickettsia prowazekii
what transmits Rickettsia prowazekii?
human body louse
flying squirrel ectoparasites
Amblyoma ticks
(so this is like the other Rickettsia)
what causes scrub typhus?
orienta tsutsugamushi
how is orienta tsutsugamushi transmitted?
mites
T/F: ALL viruses are obligate intracellular organisms.
TRUE
ALL OF THEM!
what test helps you differentiate between immune & non-immune hemolysis?
DAT
(although sometimes it’s abn in non-immune too so idk)
is staph saprophyticus resistant or sensitive to novobiacin?
resistant
what is the most common chromosomal translocation in childhood ALL?
t(12;21) ETV6-RUNX1
WHICH IS THE SAME FUCKING THING AS
t(12;21) TEL-AML1
name the 4 sources of the metabolite morphine in the body
- codeine
- heroin
- morphine
- poppy seeds
what is the name of the unique metabolite to heroin?
6-MAM
how long does 6-MAM stay in the urine after herin use?
24 hours
what is the metabolite of methadone?
EDDP
2-ethylidene-1,5-dimethyl-3,3-diphenylpyrrolidine
what drugs can cause a false positive on methadone specific immunoassays?
verapamil
quetiapine
diphenhydramine
doxylamine
what is the deficiency in hyperhomocysteinemia?
cystathionine-β-synthase
long-term immunity in Hep B
anti HBs
acute stage Hep B
HBsAg & HBeAg
“core window” period of Hep B
anti HBc total and anti HBc IgM
what is the core window period of Hep B exactly?
the 6 months between acute onset and permanent immunity
you need 2 things for computer crossmatch, what are they
- no record of previous detection of an antibody
- T W O determinants of the patient’s ABO group
which viruses take ~2 weeks to show viral cytopathic effect?
CMV & RSV
which virus has retractile fiber formation
CMV
most common genetic abnormality identified in FISH in CLL
del13q
there are 3 FISH cytogenetic abnormalities and three additional things that portend poor survival in CLL. what are they?
FISH
- del17p
- del11q
- “complex abnormalities”
Unmutated immunoglobulin heavy chain variable gene (IgHCV gene)
ZAP-70 expression (>20%)
CD38 expression (>30%)
***please note that the most common cytogenetic abnormality in CLL, del13q, is NOT included in this list.
rearrangements involving what chromosome/gene are usually found in ALCL?
chromsome 2: ALK gene
classic translocation is t(2;5) ALK-NPM
what test do you use to monitor therapy in a patient being treated for TTP?
platelet count, keep it simple
screening test for lupus anticoagulant
LA sensitive aPTT
colloidal silica clotting time
kaolin clotting time
dRVVT
which heme malignancy is a/w basophilia?
CML
whose egg is this
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diphylidium caninum
what’s this
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diphylidium caninum proglottid
3 ways you can tell mycobacterium bovis apart from tuberculosis
- tuberculosis reduces nitrate very strongly, bovis does not
- tuberculosis is positive for niacin accumulation, bovis does not
- tuberculosis will grow on thiophene-2-carboxylic hydrazine (TCH) medium, bovis does not
what peripheral blood finding should clue you in to hairy cell?
monocytopenia
specific marker for hairy cell
annexin A1
(TRAP, CD103, CD11c, CD25 also all positive)
how does hairy cell look/infiltrate in bone marrow?
nodular
how does ascorbic acid interfere with UA results?
most of the UA strip tests are oxidating rxns, and vitamin C is an antioxidant, so it quenches the rxns
what vitamin is ascorbic acid?
vitamin C
what rxns does ascorbic acid interfere with on a UA?
blood
urobilinogen
bilirubin
glucose
nitrite
leukocyte esterase
what’s this?
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morulae of anaplasma/ehrlichia
what’s this?
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Rickettsia rickettsii
what cells does Rickettsia infect?
vascular endothelial cells
reference standard for RMSF diagnosis
IFA assay
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what bug is implicated in trench fever?
bartonella/rochalimaea Quintana
what transmits bartonella/rochalimaea quintana?
human body louse
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what stain can you use to dx bartonella?
warthin-starry
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algorithm for fatty acid oxidation disorder suspicion
- screen blood & bile for acylcarnitine analysis
- frozen sections of liver > ORO, metabolic profile, carnitine studies
- fibroblast culture of skin > in vitro enzyme and molecular studies
pseudocholinesterase deficiency > delayed metabolism of what drug?
succinylcholine
what is the most likely antibody implicated in an ABO mismatch HDFN case?
probably anti-A,B antibodies bc they are IgG and they can cross the placenta
what is the first line treatment for a patient with ITP and a plt count under 30?
steroids, long course
IVIg
IV RhIg in Rh+ patients
which lymphoma has a universally extremely high Ki that usually exceeds 95%?
Burkitt
DLBCL: good prognosis
CD10 & Bcl-6 positive
these suggest germinal center origin which is better than activated B-cell subtype
most common cytogenetic abnormality in DLBCL
most common translocation involves 3q27 (Bcl-6)
Assign +/- for CD10, MUM1, and Bcl6 for
DLBCL, ABC
DLBCL, GC
ABC: CD10 neg, MUM1 positive
GC: CD10 or Bcl-6 positive, MUM1 negative
Brucella is a gram-negative coccobacillus that is positive for 4 biochemical reactions. what are they?
- urease
- nitrate reduction
- oxidase
- catalase
Brucella and Bordetella are both urease & oxidase positive. How do you tell them apart?
Bordetella WILL grow on MacConkey
Brucella will NOT grow on MacConkey
what’s this
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brucella mellitensis
best method for measuring antithrombin activity
chromogenic amidolytic
best method for measuring antithrombin antigen levels
ELISA
immunodiffusion
latex particle immunoturbidimetric
Type I AT deficiency and Type II AT deficiency
which is qual & which is quant?
Type I: quantitative antithrombin defect
Type II: qualitative antithrombin defect
Type I AT deficiency and Type II AT deficiency
antigen assay & functional assay
low/high/normal in each?
type I (quant): Ag assay low, functional assay low [bc you have so little of it that you have less activity]
type II (qual): Ag assay normal, functional assay low
assign each of these to a disorder
- smooth - SLE
- centromeric (aka speckled) - CREST/scleroderma
- peripheral - SLE
- nucleolar - Sjogren’s
marginal zone B-cells, mantle zone B-cells, and paracortical T-cells are all positive for X
whereas germinal center B-cells are negative for X but positive for Y
X = Bcl-2
Y = Bcl-6
simplified
CD10+ lymphoma
follicular or DLBCL
simplified
CD10-/5+ lymphoma
SLL or mantle cell
simplified
CD10-/5+/23+
CLL/SLL
simplified
CD10-/5+/23-
mantle cell
simplified
CD10-/5-
MZL (MALT) or LPL
simplified
CD15+/30+ lymphoma
Hodgkin
which Ig antibodies can cause intra and extravascular hemolysis?
IgM = intra (multivalent)
IgG = extra (two Fab sites)
how does EBV get into a cell?
CD21
giant platelets should make you think of THESE entities (there are 4)
acquired: MDS
inherited: Bernard-Soulier, May-Hegglin, familial macrothrombocytopenia
what is the enzyme that transports most (~95%) of the copper from the GI tract to peripheral tissues?
ceruloplasmin