Proteins in Action Flashcards

1
Q

Many proteins are composed of seperate […]

A

Many proteins are composed of seperate functional domains

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2
Q

What is a protein domain?

A

A protein domain is the segment of a polypeptide chain that can fold independently into a compact, stable structure

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3
Q

Protein domains may be […] during evolution to create proteins with […]

A

Protein domains may be recombined during evolution to create proteins with different functions

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4
Q

Quarternary Structure of Proteins: Proteins can consist of many […]

A

Quarternary Structure of Proteins: Proteins can consist of many individual polypetide chains (also known as subunits)

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5
Q

[…] between cysteine residues help to stabalize favorable protein confirmations of secreted proteins

A

Disulfide bonds between cysteine residues help to stabalize favorable protein confirmations of secreted proteins

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6
Q

Disulfide bonds can only form in […] environments like:
- Outside of cells
- Lumen of ER or other orgnalled in the secretory pathway and endocytic pathway

A

Disulfide bonds can only form in oxidizing environments like:
- Outside of cells
- Lumen of ER or other orgnalled in the secretory pathway and endocytic pathway

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7
Q

Insulin, the first protein sequenced by (Fred Sanger) is stablized by […] bonds

A

Insulin, the first protein sequenced by (Fred Sanger) is stablized by disulfide bonds

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8
Q

Some macromolecular complexes contain […] and […]

A

Some macromolecular complexes contain proteins and RNA i.e the ribosome contains 4 RNAs and 82 different proteins

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9
Q

It is believed that life originated with […], being both the genetic material and performing all enzymatic reactions

A

It is believed that life originated with RNA, being both the genetic material and performing all enzymatic reactions

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10
Q

Selective binding of protein to ligand depends on a set of […]

A

Selective binding of protein to ligand depends on a set of weak non covalent interactions

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11
Q

Binding sites allow a protein to interact with very specific […]

A

Binding sites allow a protein to interact with very specific ligands

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12
Q

What are enzymes?

A

Enzymes are catalysts that speed-up the rates of chemical reactions and can provide specificity, which means that cells can “choose” which reactions they will catalyze

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13
Q

Enzymes […] chemical reactions while remaining unchanged themselves

A

Enzymes catalyze (speed-up) chemical reactions while remaining unchanged themselves

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14
Q

How to enzymes catalyze reactions?

A

Enzymes catalyze reactions by lowering the activation energy barrier

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15
Q

Enzymes speed up reaction ratesm, but do not change whether […]

A

Enzymes speed up reaction ratesm, but do not change whether a reaction is favorable or not

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16
Q

Enzymes […] the relative energies of reactants and products

A

Enzymes cannot change the relative energies of reactants and products

17
Q

Enzymes catalyze reactions by […]

A

Enzymes catalyze reactions by lowering the activation energy barrier

18
Q

How can cells carry out unfavorable reactions?

A

Reaction “coupling” can drive an energtically unfavorable reaction

19
Q

A […] free energy release will drive a coupled reaction forward

A

A net free energy release will drive a coupled reaction forward

20
Q

What is the most widely used chemical energy source in cells?

A

ATP is the most widely used chemical energy source in cells

21
Q

ATP hydrolysis releases […]

A

ATP hydrolysis releases lots of energy

22
Q

What is hydrolysis?

A

Hydrolysis is when a molecule of H20 breaks a bond

23
Q

The energy released by ATP hyrdolysis is […] to hundreds of reactions in cells

A

The energy released by ATP hyrdolysis is coupled to hundreds of reactions in cells

24
Q

An energetically unfavorable reaction can be driven by […] to ATP hydrolysis

A

An energetically unfavorable reaction can be driven by coupling to ATP hydrolysis

25
How is protein activity regulated in the cell?
1. Control of protein amount 2. Control of protein activity
26
How does the cell control the protein amount?
- Rate of mRNA transcription (gene expression) - Rate of mRNA degradation - Rate of mRNA translation into proteins - Rate of protein degredation
27
How does the cell control protein activity?
- Inhibition of activation by ligands (i.e feedback inhibition) - Inhibition or activation by another protein - Cellular localization (i.e targeting to nucleus) - Protein modification (i.e phosphorylation)
28
Feedback inihibition in metabolic pathways occurs through **[...]** which leads to **[...]**
Feedback inihibition in metabolic pathways occurs through **allostery** which leads to **conformational change**
29
How does feedback inhibition work?
The product of the reaction inhibits the initial enzymes ability to catalyze the original reaction
30
Phosphorylation is a very common way of **[...]** and changes how the protein interacts with other molecules
Phosphorylation is a very common way of **regulating protein function** and changes how the protein interacts with other molecules
31
There are many different kinases and each kinase has many **[...]**
There are many different kinases and each kinase has many **substrate (target) proteins**
32
Kinases often **[...]** other kinases in signaling pathways
Kinases often **phosphorylate** other kinases in signaling pathways
33
Small **[...]** are molecular swithces
Small **GTP-binding proteins (GTPases or monomeric GTPases)** are molecular swithces
34
Each **[...]** has a downstream pathway it regulates
Each **small GTPase** has a downstream pathway it regulates
35
The **[...]** regulates cell growth
The **Ras GTPase** regulates cell growth