Protein Transport Between Organelles Flashcards

1
Q

Define ERGIC.

A

Endoplasmic reticulum Golgi Intermediate compartment. After secretory proteins bud from the ER membrane, these transport vesicles fuse with one another to form larger vesicles and interconnected tubules in the region between the ER and Golgi. This region is called the ERGIC.

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2
Q

Defines VTCs.

A

VTCs are the vesicular-tubular carriers that form in the ERGIC.

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3
Q

Define CGN and describe its role in the Golgi.

A

The CGN is an interconnected network of tubules known as the cis Golgi network. It functions primarily as a sorting station that distinguishes between proteins to be shipped back to the ER and those to proceed to the next Golgi station.

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4
Q

Define TGN and describe its role in the Golgi.

A

The distinct network of tubules and vesicles on the trans-most face of the organelle contains a distinct network of tubules and vesicles called the trans Golgi network. The TGN is a sorting station where proteins are segregated into different types of vesicles heading either to the plasma membrane or to various intracellular destinations.

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5
Q

What happens as newly synthesized soluble and membrane glycoproteins pass through the cis and medial cisternae of the Golgi stack?

A

Most of the mannose residues are removed from the core oligosaccharides and other sugars are transferred sequentially by various glycosyltransferases.

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6
Q

How does glycosylation within the Golgi differ from glycosylation within the ER?

A

Glycosylation in the ER produces a single core oligosaccharide. Glycosylation in the Golgi is more varied, producing diverse carbohydrate domains. N-linked oligosaccharides are usually synthesized in the ER and O-linked oligosaccharides in the Golgi.

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7
Q

Describe the cisternal maturation model of the Golgi.

A

This model says that Golgi cisternae are transient structures. Cisternae form at the cis face by fusion of membranous carriers from the ER and ERGIC and each cisterna physically moves from the cis to the trans end of the stack, changing in composition as it progresses.

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8
Q

Describe the vesicular transport model of the Golgi.

A

This model says that the cisternae of the Golgi remain in place as stable compartments. Cargo (secretory, lysosomal, and membrane proteins) is shuttled through the Golgi stack, from the CGN to the TGN in vesicles that bud from one membrane compartment and fuse with a neighboring compartment farther along the stack.

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9
Q

What are the two functions of protein coats on coated vesicles?

A
  1. They act as a mechanical device that causes the membrane to curve and form a budding vesicle.
  2. They provide a mechanism for selecting the components to be carried by the vesicle. These components might be cargo proteins or the machinery required to target the vesicle to the correct acceptor membrane, for example.
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10
Q

How does the structure of a vesicle coat help it perform its function?

A

The vesicle coat is composed of two distinct protein layers: an outer cage or scaffolding that forms the framework for the coat and an inner layer of adaptors that binds both to the outer surface of the lipid bilayer and the membrane’s cargo. The adaptors are able to select specific cargo molecules by virtue of their specific affinity for the cytosolic “tails” of integral proteins that reside in the donor membrane.

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11
Q

What is the role of COPII-coated vesicles?

A

They move materials from the ER forward to the ERGIC and Golgi.

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12
Q

What is the role of COPI-coated vesicles?

A

They move materials in a retrograde direction 1) from the ERGIC and Golgi stack backward toward the ER and 2) from trans Golgi cisternae backward to cis Golgi cisternae.

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13
Q

What is the role of clathrin-coated vesicles?

A

They move materials from the TGN to endosomes, lysosomes, and plant vacuoles. They also move materials from the plasma membrane to cytoplasmic compartments along the endocytic pathway. They have also been implicated in trafficking from endosomes and lysosomes.

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14
Q

How are proteins maintained in an organelle (kept distinct)?

A
  1. Retention of resident molecules that are excluded from transport vesicles. Retention may be based primarily on the physical properties of the protein. For example, soluble proteins that are part of large complexes or membrane proteins with short transmembrane domains are not likely to enter a transport vesicle
  2. Retrieval of “escaped” molecules back to the compartment in which they normally reside.
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15
Q

How are “escaped” molecules in the ERGIC returned to the ER?

A

Specific receptors capture the molecules and return them to the ER in COPI-coated vesicles. Soluble resident proteins of the ER lumen typically possess the retrieval signal (KDEL).

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16
Q

What happens to lysosomal proteins once they are synthesized in the ER?

A

They are carried to the Golgi complex, and once in the cisternae, soluble lysosomal enzymes are specifically recognized by enzymes that catalyze the two-step addition of a phosphate group to certain mannose sugars of the N-linked carbohydrate chain.

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17
Q

Describe the structure of clathrin-coated vesicles.

A

The coats of the vesicles contain:
1. An outer honeycomb-like lattice composed of the protein clathrin, which forms a structural scaffold.
2. An inner shell composed of protein adaptors, which covers the surface of the vesicle membrane that faces the cytosol.

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18
Q

What role do SNAREs play in vesicle fusion?

A

SNAREs play an important role in bringing the membranes of the vesicle and target compartment into close contact with one another as a result of the interaction between the cytosolic regions of integral proteins of the two membranes.

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19
Q

What is the difference between a v-SNARE and a t-SNARE?

A

V-SNAREs become incorporated into the membranes of transport vesicles during budding, and t-SNAREs are located in the membranes of target compartments.

20
Q

Define exocytosis.

A

Exocytosis is the fusion of a secretory vesicle or secretory granule with the plasma membrane and subsequent discharge of its contents.

21
Q

Define bulk-phase endocytosis.

A

Also known as pinocytosis, bulk-phase endocytosis is the nonspecific uptake of extracellular fluids.

22
Q

Define receptor-mediated endocytosis (RME).

A

RME brings about the uptake of specific extracellular macromolecules (ligands) following their binding to receptors on the external surface of the plasma membrane.

23
Q

What are coated pits?

A

Specialized domains of the plasma membrane that collect substances that enter a cell by means of clathrin-mediated RME.

24
Q

Describe the role of COP-coated transport vesicles.

A

These transport vesicles work between ER and Golgi compartments. They are usually 50-100 nm in diameter. They deform a membrane into a sphere in order to transport it.

25
Q

Describe the steps of vesicle transport.

A
  1. Formation of coated buds. COPs form and deform the membrane into a sphere.
  2. The coated transport vesicle forms.
  3. The vesicle targets and docks to a specific compartment, and the protein coat is removed. Vesicle fusion then occurs with SNAREs and Rabs.
26
Q

How does a transport vesicle form?

A

The GTPase switch mechanism. First, GEF (guanine nucleotide exchange factor) is activated. (This signals that a new transport vesicle needs to be formed). The Sar1 that was linked to the GDP now inserts in the membrane and acts as the crystallizing point to recruit the machinery that will actually cause the membrane to be formed into a sphere. The protein coat forms.

27
Q

How is the formation of a transport vesicle halted?

A

To “turn off the switch” of transport formation, the Sar1 links to a GDP and falls out of the membrane so it can be reused.

28
Q

How does the cell know where to deliver a vesicle?

A

A V-SNARE will bind to a specific target: a T-SNARE. This mediates the specificity of trafficking (the SNARE hypothesis).

29
Q

How do a V-SNARE and T-SNARE associate with one another?

A

They associate in an energetically favorable conformation that overcomes the energy cost of membrane fusion. To do this, they physically wrap around one another, with their respective a-helices coiling around each other. This overcomes the energy cost of transferring cargo, allowing it to be delivered.

30
Q

What is CATCHR?

A

Complexes involved in protein transport that are associated with the tethering of membranes.

31
Q

What happens when a protein is inappropriately packaged in the ER?

A

If the improperly packaged protein reaches the Golgi, there are receptors there that sense when a protein has been mishandled. These receptors have four amino acids that act as their “sorting signal.” They are COP I mediated transport vesicles.

32
Q

What happens in the trans-Golgi network (TGN)?

A

Here, proteins are sorted for their final destinations.

33
Q

What happens if a protein does not have a specific sorting signal in the Golgi?

A

It will undergo constitutive secretion from the Golgi. This is a constant process that does not require a trigger or signal; it is the default position. Constitutive secretion will take the protein to the plasma membrane.

34
Q

What is the signal that will send a protein to the ER?

A

The signal that sends a protein to the ER is the N-terminus a-helix signal.

35
Q

What is the amino acid sequence for retrieval?

A

Retrieval refers to the transport of a protein back to the RER after it was in the Golgi. KDEL is the sequence for this event.

36
Q

What is the inclusion cell disease, and how does it occur?

A

The inclusion cell disease happens when the function of the lysosome is disrupted. When the hydrolases fail to work, the lysosome becomes distended, like an overfilled stomach. This state is called the inclusion body.

37
Q

How is the mannose-6-phosphate signal different from the amino acid signals that were important for movement in the ER?

A

The M6P signal relies on a glycosylation mechanism.

38
Q

The absence of what enzyme results in inclusion cell disease?

A

Phosphotransferase.

39
Q

What components are necessary to form triskelions?

A

You need 3 heavy chains of clathrin and 3 light chains of clathrin to form triskelions. These components spontaneously assemble into geodesic vesicle coats. Clathrin assembly provides the energy required to deform the membrane into spherical vesicles.

40
Q

What is the signal that will get proteins to the mitochondria?

A

An amphipathic a-helix at the N terminus with a positive charge on one side. This signal is different from the ER signal sequence because it has a unique address.

41
Q

How does a protein import into the mitochondria?

A

To get into the mitochondria, a protein associates with the import receptor using two translocon proteins: TOM and TIM. Once the protein enters the mitochondria, its signal is cleaved off.

42
Q

What are the energy requirements for unfolding a protein for importation into the mitochondria?

A
  1. A cytosolic ATPase chaperone (HSP70) to unfold the protein for import.
  2. An electrical potential across the inner membrane.
  3. Mitochondrial HSP70 refolds protein after import.
43
Q

How are proteins targeted to mitochondrial membranes and compartments? (using the direct route)

A

A mitochondrial targeting signal directs import through the TOM/TIM complex. A stop transfer signal (a hydrophobic sequence) interrupts translocation through TIM, leaving protein embedded in the inner membrane. This protein is now an integral membrane protein of the inner mitochondrial membrane. The cleavage of stop transfer signal releases it into the intermembrane space (IMS).

44
Q

How are proteins targeted to mitochondrial membranes and compartments? (using the roundabout route)

A

Many proteins use targeting signals to get inserted in the inner membrane. Signal 1 targets to the matrix, and then cleavage of signal 1 exposes signal 2, which targets proteins back through the inner membrane using the OXA transporter. Proteins translated in matrix are exported to the IM or IMS via OXA.

45
Q

How does import into the chloroplast thylakoid take place?

A

A transit peptide (an amphipathic a-helix) targets to the chloroplast stroma; similar to mitochondrial signal peptide but NOT interchangeable.