Chloroplasts & Photosynthesis Flashcards

1
Q

Describe the outer covering of a chloroplast.

A

The outer covering consists of an envelope composed of two membranes separated by a narrow space. The outer membrane contains porins, and though they are large, exhibit some selectivity. In contrast, the inner membrane is highly impermeable; substances moving through this membrane do so only with the aid of a variety of transporters.

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2
Q

Define thylakoids

A

Thykaloids are flattened membranous sacs into which the internal membrane of a chloroplast is organized.

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3
Q

What are the grana?

A

Grana are orderly stacks into which the thylakoids are arranged.

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4
Q

What is the stroma?

A

The stroma is the space outside the thylakoid and within the chloroplast envelope. It contains the enzymes responsible for carbohydrate synthesis.

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5
Q

Describe the protein and lipid content of thylakoid membranes.

A

Thylakoid membranes have a high protein content and are unusual in having relatively little phospholipid. Instead, they have a high percentage of galactose-containing glycolipids. Fatty acids of these lipids contain several double bonds, which makes the lipid bilayer of the thylakoid membranes highly fluid, facilitating lateral diffusion of protein complexes through the membrane during photosynthesis.

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6
Q

What was Van Niel’s hypothesis?

A

Van Niel wanted to overturn the belief that during photosynthesis, carbon dioxide was being split into its two atomic components. He proposed instead that it was water that was split. This framed photosynthesis as the reverse of cellular respiration.

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7
Q

How can photosynthesis be seen as the reverse of cellular respiration?

A

Whereas respiration in mitochondria reduces oxygen to water, photosynthesis in chloroplasts oxidizes water to oxygen. The former process releases energy, so the latter process must require energy.

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8
Q

What happens in the first stage of photosynthesis, the light-dependent reactions?

A

During this stage, energy from sunlight is absorbed and stored as chemical energy in ATP and NADPH. ATP is the primary source of chemical energy, and NADPH is the primary source of reducing power.

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9
Q

What happens in the second stage of photosynthesis, the light-independent reactions?

A

Carbohydrates are synthesized from carbon dioxide using the energy stored in the ATP and NADPH molecules produced in the light-dependent reactions.

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10
Q

Define pigments.

A

Pigments are compounds that appear colored because they only absorb light of particular wavelengths within the visible spectrum. For example, leaves are green because their chloroplasts contain large quantities of the pigment chlorophyll, which absorbs most strongly in the blue and red, leaving the intermediate green wavelengths to be reflected to our eyes.

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11
Q

Describe the structure of chlorophyll.

A

Each molecule of chlorophyll consists of two parts:
1. a porphyrin ring that functions in light absorption
2. a hydrophobic phytol chain that keeps the chlorophyll embedded in the photosynthetic membrane.

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12
Q

How does the porphyrin ring of chlorophyll work to absorb light?

A

The porphyrin ring contains an atom of magnesium. The alternating single and double bonds along the edge of the porphyrin ring delocalize electrons, which forms a cloud around the ring. Conjugated systems such as these are excellent absorbers of light.

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13
Q

What effects does a conjugated system have on a chlorophyll molecule’s ability to absorb light?

A

When the molecule absorbs light, the energy causes a redistribution of the electron density of the molecule, which in turn favors the loss of an electron to an acceptor. The conjugated bond system also broadens the absorption peaks, enabling individual molecules to absorb energy of a range of wavelengths.

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14
Q

Define absorption spectrum.

A

An absorption spectrum is a plot of the intensity of light absorbed relative to its wavelength.

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15
Q

Define carotenoids and explain their function.

A

Carotenoids are like chlorophyll in that they are a type of light-absorbing photosynthetic pigment with conjugated bonds. They act as secondary light collectors during photosynthesis and draw excess energy away from excited chlorophyll molecules and dissipate it as heat.

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16
Q

What would happen if the excess energy in a plant cell were not absorbed by carotenoids?

A

The energy would be transferred to oxygen, producing an ultrareactive form of the molecule called singlet oxygen that can destroy biological molecules and cause cell death.

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17
Q

Define action spectrum and contrast it with an absorption spectrum.

A

An action spectrum is a plot of the relative rate (or efficiency) of photosynthesis produced by light of various wavelengths. Unlike an absorption spectrum which simply measures the wavelengths of light that are absorbed by particular pigments, an action spectrum identifies the wavelengths that are effective in bringing about a given physiologic response.

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18
Q

Describe the transfer of excitation energy and the structure needed for this to occur.

A

Several hundred chlorophyll molecules act together as one photosynthetic unit in which only the one reaction-center chlorophyll actually transfers electrons to an electron acceptor. Energy is transferred randomly through a network of pigment molecules that absorb light of increasingly longer wavelengths until the energy reaches the reaction-center chlorophyll, which transfers an excited electron to a primary acceptor.

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19
Q

What is the “rule” for transferring excitation energy among pigment molecules?

A

Among antenna pigments, energy can only be transferred to an equal or less energy-requiring molecule. Energy can only be passed to a molecule that absorbs light of equal or longer wavelength.

20
Q

Where do the light-absorbing reactions of photosynthesis occur?

A

In the large pigment-protein complexes called photosystems. There are two types of photosystems required to catalyze the two light-absorbing reactions utilized in oxygenic photosynthesis.

21
Q

Describe the relationship and differing functions between the photosystem I and the photosystem II.

A

PSII boosts electrons from an energy level below that of water to a midway point. PSI raises electrons from a midway point to an energy level well above that of NADP+. The two systems act in a series, one after the other. Even though they mediate distinctly different photochemical reactions, the two types of photosystems have similar protein composition and architecture.

22
Q

Describe what happens after sunlight strikes a thylakoid membrane.

A

Energy is absorbed by antenna pigments of PSII and PSI and passed to the reaction centers of each–P680 and P700, respectively. Electrons are boosted to an outer orbital, and each electron is transferred to a primary electron acceptor. After losing their electrons, P680 and P700 become P680+ and P700+.

23
Q

What are the two activities that PSII accomplishes?

A
  1. It removes electrons from water
  2. It establishes a proton gradient.
24
Q

When excitation energy reaches the PSII reaction center, what happens?

A

The excited reaction center pigment (P680) responds by transferring a single photoexcited electron to a closely associated chlorophyll-like pheophytin molecule, which is the primary electron acceptor. This electron transfer generates a separation of charge in PSII between a positively charged donor (P680+) and a negatively charged acceptor (Pheo-)

25
Q

What is the importance of the formation of the two oppositely charged species P680+ and Pheo-?

A

P680+ is electron-deficient and can accept electrons, making it an oxidizing agent. In contrast, Pheo- has an extra electron that it will readily lose, making it a reducing agent. This event–the light-driven formation of an oxidizing agent and a reducing agent–takes less than a billionth of a second and is the essential first step in photosynthesis.

26
Q

How many protons are required for the oxidation of water in PSII?

A

Four protons.

27
Q

Define photolysis.

A

Photolysis is the splitting of water during photosynthesis.

28
Q

Contrast the final products of PSII and PSI.

A

Events occurring in PSII generate a strong oxidizing agent capable of producing O2 from water, whereas events occurring in PSI generate a strong reducing agent capable of producing NADPH from NADP+.

29
Q

What is required for the production of one molecule of O2?

A

The production of one molecule of O2 requires the removal of four electrons from two molecules of water. The removal of four electrons from water requires the absorption of four photons, one for each electron.

30
Q

What does the reduction of one molecule of NADP+ require?

A

It requires the transfer of two electrons.

31
Q

What products and how many moles of each does the absorption of eight moles of photons produce?

A

When eight moles are absorbed by a cell, it can produce one mole of molecular oxygen and two moles of NADPH.

32
Q

Why does a proton gradient form across the thylakoid membrane?

A

The proton gradient forms as the result of the removal of H+ from the stroma and the addition of H+ to the thylakoid lumen. Contributions to the proton gradient arise from 1) the splitting of water in the lumen, 2) oxidation of plastoquinol (PQH2) by cytochrome b6f, releasing protons into the lumen, and 3) reductions of NADP+ and PQ, which remove protons from the stroma.

33
Q

What is noncyclic photophosphorylation?

A

The formation of ATP during the process of oxygenic photosynthesis. It is named noncyclic photophosphorylation because electrons move in a linear (noncyclic) path from water to NADP+.

34
Q

What are the two main parts of the structure of a chlorophyll A molecule?

A

This molecule has a long hydrophobic tail that anchors the molecule in the thylakoid membrane. The other part is a chlorin ring composed of four nitrogen group surrounding a magnesium molecule.

35
Q

Describe what happens when a photon hits a chlorin ring in a chlorophyll molecule.

A

When a photon hits this ring, it excites an electron, which goes whizzing around the ring. The ring allows the energy from that excited electron to be contained for a short period of time and harvested for use.

36
Q

What would happen in the chlorin ring if the electrons were not delocalized?

A

That means the energy from an excited electron (that was hit by a photon) would be constrained to a single covalent bond, and that bond would be broken.

37
Q

What causes charge separation in the Z scheme?

A

A photon hits PSII and the electron in chlorophyll is elevated enormously from a positive redox potential to a negative redox potential. This excitation causes a charge separation as the electron is passed on.

38
Q

In the Z scheme, what happens after the charge separation is established?

A

The excited electron is replaced with an electron taken from water (this is catalyzed by a manganese-containing water splitting enzyme). The electron is transported through an electron transport carrier chain to the PSI.

39
Q

When an electron passes through PSI, what happens?

A

Because more energy is needed, another photon hits, and another chlorophyll molecule is excited (P700). The electron is passed through an enzyme complex to oxidize NAD+ to NADPH.

40
Q

How are electrons transferred from the chlorophyll to the cytochrome b6-f complex?

A

Reduced plastiquinone (PQb2-) accepts two protons from stromal side of membrane to stabilize the negative charges as it transports electrons to the next carrier in the chain. Therefore, it acts as both an electron transport carrier and a proton pump.

41
Q

What is resonance energy transfer?

A

Resonance energy transfer is the way in which energy from a photon is transmitted to chlorophyll molecules. The excited electron itself is not passed on. Rather, the energy from its excitation is.

42
Q

Why would cyclic photophosphorylation be necessary (using PSI alone)?

A

Some plants use PSI alone to synthesize ATP without reducing NADP+. In dark reactions, the cell needs more ATP than it does NADPH. In order to have enough ATP to run the reaction, cyclic photophosphorylation is necessary.

43
Q

How does the Calvin cycle create glyceraldehyde 3-P?

A

The enzyme ribulose bisphosphate carboxylase carboxylates ribulose 1,5-bisphosphate by simultaneously binding three 1,5-bisphosphate and three carbon dioxide molecules. The Calvin cycle siphons off one glyceraldehyde 3-P

44
Q

What is the general process of the Calvin cycle?

A

Overall, 3 carbon dioxide molecules from the atmosphere are used to generate one 3-carbon organic molecule: one molecule of glyceraldehyde 3-P

45
Q

What are the costs of running the Calvin cycle?

A

9 ATP
6 NADPH