Protein Synthesis Flashcards

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1
Q

What are the 3 major functions of DNA?

A
  • controls cellular activities, including reproduction; genetic information is encoded on chromosomes in bases, which are used to build proteins
  • replicates; in order for every cell to have genetic information DNA must replicate itself
  • mutates; mutations and recombination in the structure and number of DNA molecules are the source of life’s diversity
  • DNA is the source of unity of life
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2
Q

Describe nucleic acid structure

A
  • DNA & RNA are polymers of nucleotides; each nucleotide is composed of a pentose (5 carbon) sugar, a phosphate group, and a nitrogenous base
  • components of the nucleotides are linked together by strong covalent bonds
  • each nucleotide links together by a covalent bond attached to the carbon 3 of the sugar
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3
Q

Describe the double helix structure

A
  • -a long, twisted ladder
  • DNA strand that consists of a sequence of nucleotides linked together
  • each strand or one side of the ladder is composed of alternating molecules of deoxyribose and phosphate with a nitrogenous base attached to each deoxyribose unit
  • pairs of joined bases form the rungs of the ladder by linking to the bases of the other strand by hydrogen bonds in a very strict pattern
  • sugar-phosphate run in opposite directions; this is called anti-parallel
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4
Q

What is complimentary base pairing?

A

-the bases can be in any order, but have specific pairings:
A bonds with T with a DOUBLE hydrogen bond
G bonds with C with a TRIPLE hydrgogen bond
-it’s the sequence of bases that codes heredity information in the genetic code in DNA and RNA

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5
Q

Nucleosomes

A
  • in long strands of DNA, there are “fillers” of information, called introns and there are exons that seperate the genes, which will be transcribed when making proteins
  • because DNA is so long, it supercoils around 8 histone proteins to form a nucleosome; this helps regulate transcription as they can serve as markers
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6
Q

What are genes?

A
  • units of inheritance that control particular characteristic or capabilities of an organism
  • located on the chromosomes of the cell nucleus and consist of segments of DNA molecules
  • genes act in pairs that dictate traits(half of the genes are from the mother and half from the father)
  • most ordering characteristics like height and eye colour are determined by combinations of several different genes
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7
Q

What are the steps for DNA replication?

A
  1. helicase unwinds(or unzips) the DNA, breaking the hydrogen bonds between the bases
  2. RNA primase(primer)is added to indicate replication
  3. DNA polymerase III adds nucleotides to 3’ end(hooks up bases and the sugar phosphate backbone)
  4. DNA primase I removes RNA primer and replaces with DNA
  5. ligase seals gaps and joins the pieces together. DNA replication is now complete
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8
Q

What is DNA replication?

A
  • DNA making identical copies of itself in order for the cell to divide
  • occurs in a 5’ - 3’ direction; 5’ end of the free DNA nucleotides is added to the 3’ end of the strand of DNA that is already synthesized
  • each strand of DNA can be viewed as a template; it produces a “reverse image” copy of itself
  • each new strand of DNA produced contains one “old” strand and one new strand, aka “semi-conservative”; this ensures that there will be very accurate replication of the parent molecule
  • the product of replication by one DNA molecule is 2 complete double-stranded DNA molecules
  • replication occurs at many forks along the DNA strand in both directions in order to speed up the process
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9
Q

What is RNA composed of?

A
  • 5 carbon-sugar called ribose
  • a phosphate group that is attached to bend of the sugar molecule
  • one of several different nitrogenous bases linked to the opposite end of the ribose
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10
Q

What is the difference between DNA and RNA?

A
  • in RNA, the base uracil is used instead of thymine
  • RNA is single stranded & not double helix; DNA is double stranded
  • RNA is produced by a process called transcription; DNA is copied by a process called replication
  • RNA polymerase is used instead of helicase
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11
Q

What are the steps of transcription

A
  1. RNA polymerase binds to a specific section of the DNA that is needed and unwinds that section
  2. along one strand of DNA(the “antisense” strand), complementary RNA bases are brought in (uracil binds with adenine, cytosine binds to guanine), and the other strand(“sense” strand) isn’t read
  3. adjacent RNA nucleotides form sugar phosphate bonds
  4. RNA polymerase reaches the terminator region and the polymerase breaks free and the RNA strand is release from DNA
  5. RNA polymerase rewinds the DNA molecule, and returns to its normal double helix form
  6. mRNA strand is processed
  7. RNA leaves the nucleus and go into the cytoplasm
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12
Q

What is rRNA?

A
  • becomes a structural part of ribosomes and serves as a genetic link between mRNA and tRNA
  • rRNA varies in size and is the most plentiful RNA
  • forms ribosomes; 1 binding site for mRNA and 3 sites for tRNA
  • small subunit is where the mRNA lands and the tRNA binding site are found on the large subunit
  • site A holds the tRNA carrying the next amino acid; site P holds the tRNA carrying the growing polypeptide chain and site E is the discharge sit
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13
Q

What is tRNA?

A
  • deliver amino acids from the cytoplasm to the ribosome
  • a different tRNA for each amino acid; each type of tRNA is to bring its specific amino acid to a ribosome, using ATP and an enzyme to attach to ribosome
  • tRNA molecules consist of about 80 nucleotides and are structured in a cloverleaf pattern
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14
Q

mRNA

A
  • carries the genetic code contained in the sequence of bases in the cell’s DNA from the nucleus to the ribosme
  • acts as a “go-between” for DNA in the nucleus and the ribosmes in the cytoplasm
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15
Q

What is translation?

A
  • the process that changes the RNA message into the actual protein and occurs at the surface of the ribosome
  • occurs when mRNA leaves the nucleus and enters the cytoplasm
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16
Q

The code

A
  • each amino acid is for by 3 bases(aka triplet code)
  • there are 20 different amino acids but only 4 different bases in DNA/RNA
  • each three-letter unit of mRNA is called a “codon”
  • each codon corresponds to an amino acid, and the same amino acid is often specified by more than one codon, but one codon only specifies one amino acid(e.g.CCU will always produce proline)
  • the same codons stand for the same amino acids in all living things
17
Q

What is the first step in translation?

A
  1. mRNA, with its start codon(AUG)attaches to the “R” site of the ribosome; this occurs in a 5’-3’ direction
  2. tRNA binds to the start of the mRNA; tRNA will read the codon of mRNA and will get the specific complementary anticodon that it’s supposed to get
18
Q

What happens in the elongation step in translation?

A
  • when an tRNA comes in with the amino acid, the amino acid recognizes the codon in the A site, which is where incoming tRNA comes in, and binds there
  • a peptide bond is formed between the new amino acid and the growing polypeptide chain
  • the amino acid is removed from tRNA
19
Q

What happens in the translocation step in translation?

A
  • the tRNA1 that was in the P site is released and the tRNA2 in the A site is translocated to the P site when the ribosome moves over 1 codon along
  • tRNA3 can now move into A site and bind with the next codon mRNA
20
Q

How does the translation process stop?

A

whena stop codon is reached; a protein called release factor binds directly to the stop codon in the A site and causes a water molecule to be added to the end of the polypeptide chain and the chain then seperates from the last tRNA and the protein is now complete and is sent to the golgi apparatus for final processing