Pharmacogenomics Flashcards

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1
Q

Factors that influence drug response phenotype:

A
  • age
  • gender
  • disease
  • genetic variation
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2
Q

Pharmacogenomics:

A
  • the study of role of inheritance in variation in drug response.
  • adverse drug rxn are major cause of morbidity and mortality.
  • knowledge of pts DNA sequence used to optimize drug efficacy and reduce adverse effects.
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3
Q

Genetic variation:

A
  • variation in proteins involved in drug metabolism or transport “pharmacokinetic variation”
  • variation in drug targets “pharmacodynamic variation”
  • variation in proteins assoc. w/ idiosyncratic adverse drug effects.
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4
Q

Pharmacokinetics:

A
  • most common factor responsible for genetic variation in enzymes that catalyze drug metabolism
  • almost all major enzymes in drug metabolism display polymorphisms.
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5
Q

Genetic polymorphisms:

A
  • Butyrylcholinesterase (psuedocholinesterase) “BChE”
  • N-acetyltransferase 2 “NAT2”
  • Cytochrome P45O 2D6 “CYP2D6”
  • Thiopurine S-methyltransferase “TMPT”
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6
Q

BChE polymorphism

A
  • neuromuscular blockers: used during surgical procedures to cause SKM paralysis
  • Succinylcholine: depolarizing NM blocker. Succ binds to nicotinic rcp; but is not metabolized effectively at the synapse.
  • the memb remains depolarized and unresponsive = flaccid paralysis.
  • onset of NM blockade is rapid w/i 1 min
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7
Q

Pts w/ genetic variation in BChE

A
  • have decr. rate of metabolism of succinylcholine = prolonged paralysis
  • defects in BChE gene are the cause
  • transmitted as an AR trait
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8
Q

NAT2 polymorphism

A
  • catalyzes the acetylation of isoniazid and other drugs.
  • many drugs are metabolized by NAT2
  • slow acetylators: metabolize isoniazid slowly w/ high blood drug levels. “homozy rec”. => prone to toxicity of drugs
  • fast acetylators: metabolize isoniazid rapidly w/ low blood drug levels.
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9
Q

NAT2 drug toxicity in slow acetylators

A
  • Isoniazid causes neuropathy and hepatoxicity
  • Hydralazine and procainamide cause SLE
  • Sulfonamides cause hypersensitivity rxns, hemolytic anemia and SLE
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10
Q

CYP2D6 polymorphism

A
  • 2: family, D: subfamily, 6: indiv enzyme in subfamily.
  • CYP2D6 -> memb of CYP450 family.
  • metabolizes a large numb of drugs “antidepressants, antiarrhythmic, analgesics”
  • described when studying antiHTN debrisoquine and oxytotic agent sparteine.
  • poor metabolizers: homozy rec w/ low enzyme activity
  • extensive metabolizers: heterozy or homo for wild type
  • ultrarapid metabolizers: have multiple copies of CYP2D6 gene “up to 13 copies”
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11
Q

Interindividual differences are important b/c CYP2D6 metabolizes:

A

-β-blocker metoprolol
•The antipsychotic haloperidol
•The opioids codeine & dextromethorphan
•The antidepressants fluoxetine, imipramine, & desipramine

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12
Q

Poor metabolizers of CYP2D6

A
  • may suffer adverse effects w/ standard dose such as metoprolol.
  • Codeine ineffective in PM b/c it requires CYP2D6-catalyzed conversion to morphine
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13
Q

Ultrarapid metabolizers of CYP2D6

A
  • require high doses of drugs metabolized by CYP2D6

- can overdose w/ codeine, suffering respiratory depression or arrest w/ standard doses.

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14
Q

TMPT

A
  • catalyzes S-methylation of anticancer thiopurines 6-mercaptopurine and azathioprine.
  • methylation inactivates these drugs
  • Thiopurines have a narrow therapeutic index and some pts suffer myelosuppresion
  • 1/300 homozygous for polymorphism that leads to low TMPT activity = incr. risk for myelosuppresion w/ standard doses of thiopurine drugs; these pts must be treated w/ 1/10 of standard dose.
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15
Q

Warfarin

A
  • affects both pharmacodynamic/kinetic.
  • oral anticoagulant w/ a narrow therapeutic window and wide interindividual variability
  • under-anticoagulation = thrombosis and over-anticoagulation = bleeding episodes.
  • racemic mixture w/ S-warfarin 3-5x more potent than R-warfarin. (the stereoisomers metabolize diff enzymes)
  • molecular targe is vit K epoxide reductate (VKORC1 - shows a no. of polymophism)
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16
Q

Warfarin metabolism

A
  • CYP2C9: a highly polymorphic gene.
  • some variants have lower activity than wild-type
  • pts w/ variant allele require decr. doses of warfarin to achieve an anticoagulant effect and have incr. hemorrhage risk.
17
Q

Idiosyncratic drug effects

A
  • rxns are not caused by differences in drug metabolism or targets
  • effects from interactions btwn the drug and physiology of pt “i.e. drug rxn assoc. w/ defic of G6PD”
18
Q

G6PD deficiency

A
  • protects RBCs from oxidative injury and is polymorhic.
  • diminished activity = impairs ability to form NADPH; which is essential for glutathione reductase (protects from oxygen radicals)
  • decr. NADPH = decr cellular detoxification of free radicals and peroxides w/i cell.
  • Sulfa, antimalarials and chloramphenicol “cause oxidative stress” - indivs w/ G6PD defic exposed to these develop hemolytic anemia (also from fava beans ingestion)
19
Q

Malignant Hyperthermia

A
  • fatal genetic disorder of SKM “AD trait”
  • results from altered control of Ca2+ release from SR = defect in ryanodine rcp gene “RYR1”
  • incr. in Ca2+ generates heat.
  • production of CO2 and deplete O2 and ATP “accl levels of aerobic metabolism”
  • switch to anaerobic met worsens acidosis w/ lactate production
  • energy stores deplete
  • muscle fibers die = hyperkalemia and myoglobinuria.
  • in susceptible indivs by volatile inhalation of anesthetics (eg halothane) and depol SKM relaxants “succinylcholine”
  • tachycardia, HTN, severe muscle rigidity, hyperthermia/kalemia, acidosis.
20
Q

Caffeine-halothane muscle contracture test

A
  • reliable test to establish susceptibility to MH
  • muscle sample of thigh is removed and placed in physiological sltn; strength is measured.
  • nl muscle will not change its baseline but an MH indiv will contract abnormally.