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Biochemistry > Nucleic Acids: How Structure Conveys Information > Flashcards

Nucleic Acids: How Structure Conveys Information Flashcards

1
Q

The nucleotide sequence of DNA is which level of structure?
a. primary
b. secondary
c. tertiary
d. quaternary

A

a

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2
Q

Quaternary structure refers to the non-covalent interaction(s) between polymeric units, such as two or more monomer
protein units that noncovalently interact. Which of the following scenarios for nucleic acids most closely resembles
quaternary structure?
a. self-assembly of subunits in the tobacco mosaic virus
b. interaction of DNA with proteins
c. RNA and protein association in ribosomes
d. All of these
e. None of these

A

d

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3
Q

The double helix of DNA is which level of structure?
a. primary
b. secondary
c. tertiary
d. quaternary
e. None of these

A

b

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4
Q

What distinguishes nucleotides from nucleosides?
a. Nucleosides lack the phosphate group.
b. Nucleosides lack the sugar group.
c. Nucleosides lack a nitrogenous base.
d. The two words are synonymous

A

a

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5
Q

Which of the following is the most distinguishing difference between a purine and a pyrymidine
a. purines are found in DNA while pyrimidines are found in RNA
b. purines have nitrogens in the rings while pyrimidines do not
c. pyrimidines have nitrogens in the rings while purines do not
d. purines are found in RNA while pyrimidines are found in DNA
e. purines are double ring structures while pyrimidines have a single ring

A

e

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6
Q

Which of the following is the most common modification of nucleic acid bases?
a. addition of a methyl group
b. addition of a carboxylic acid
c. addition of a fluorine
d. reduction of a carbonyl to an alcohol

A

a

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7
Q

Deoxyadenylate (dA) is a:
a. purine base
b. pyrimidine base
c. purine based nucleoside
d. purine based nucleotide
e. pyrimidine based nucleotide

A

d

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8
Q

Which of the following bases is not found in RNA?
a. A
b. C
c. G
d. T
e. All of these are found in RNA.

A

d

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9
Q

Which of the following nucleobases is a purine?
a. adenine
b. cytosine
c. thymine
d. uracil

A

a

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10
Q

Deoxythymidylate (dT) is a:
a. purine base
b. pyrimidine base
c. pyrimidine based nucleotide
d. purine based nucleotide
e. nucleoside

A

c

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11
Q

The fundamental differences between RNA and DNA are
a. the organic bases only
b. bases, ribose units, and the phosphodiester linkage
c. bases, ribose units, and the glycosidic bond type
d. bases and the ribose units only

A

d

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12
Q

Which of the following groups is not found in nucleosides?
a. Phosphates
b. Purines
c. Pyrimidines
d. Sugars
e. All of these are found in nucleosides

A

a

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13
Q

The backbone of nucleic acids consists of
a. a phosphodiester bond between the 2’ and 5’ hydroxyl groups of neighboring sugars
b. a phosphodiester bond between the 3’ and 5’ hydroxyl groups of neighboring sugars
c. a glycosidic bond between a pyrimidine and a sugar
d. a glycosidic bond between a purine and a sugar

A

b

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14
Q

Which contains a phosphoanhydride bond?
a. DNA
b. RNA
c. ATP
d. AMP
e. None of these

A

c

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15
Q

The oligonucleotide AGGUCCAUUGAAp, is best described as
a. an RNA oligonucleotide with a 3’phosphate
b. an RNA oligonucleotide with a 5’phosphate
c. a DNA oligonucleotide with a 3’phosphate
d. a DNA oligonucleotide with a 5’phosphate

A

a

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16
Q

Which best describes the relationship between the nucleobases in a piece of DNA?
a. They are parallel to the helical axis.
b. They are perpendicular to the helical axis.
c. They are randomly oriented with respect to the helical axis.
d. They are covalently bonded between the nucleobases across from one anothr in the two DNA strands
e. The four nucleobases are present in equal quanitites in a piece of DNA

A

b

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17
Q

Which of the following statements is true for double-stranded DNA?
a. The amount of A is the same as the amount of T, and the amount of G is the same as the amount of C.
b. The amount of A is the same as the amount of G, and the amount of T is the same as the amount of C.
c. The amount of A is the same as the amount of C, and the amount of G is the same as the amount of T.
d. More than one of the above is true.

A

a

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18
Q

Where can drugs or polypeptides bind to DNA?
a. The minor groove only.
b. The major groove only.
c. Either the minor or major groove.
d. Neither the minor or major groove.

A

c

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19
Q

The outside diameter of a piece of DNA is closest to
a. 2 Å.
b. 20 Å.
c. 200 Å.
d. 2000 Å.

A

b

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20
Q

Histones are proteins that
a. are frequently associated with eukaryotic DNA
b. are frequently associated with prokaryotic DNA
c. are never found in association with DNA
d. contain a high percentage of residues with carboxylic acid side chains
e. None of these

A

a

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21
Q

Which is the dominant form of DNA found in the cell?
a. A
b. B
c. Z
d. H
e. All forms of DNA are found in equal amounts

A

b

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22
Q

Two circular DNAs are isolated, both with 1000 bp. One is supercoiled; the other is not. The two DNAs are placed in
an ultracentrifuge.
a. The supercoiled DNA should sediment faster.
b. The nonsupercoiled DNA should sediment faster.
c. They should sediment at the same rate.
d. The information provided is not enough to determine which will sediment faster.

A

a

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23
Q

Which of the following characteristics is associated with the B form of DNA?
a. the sugars are located in the interior of the double helix
b. the distance between base pairs along the axis of the helix is 8 Å
c. the major and minor grooves are readily apparent
d. the planes of the bases make about a 20 degree angle with the helix axis

A

c

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24
Q

The Z-form of DNA
a. does not exist in nature.
b. is right-handed.
c. tends to occur in purine-only sequences.
d. tends to occur in pyrimidine-only sequences.
e. tends to occur in alternating purine-pyrimidine sequences.

A

e

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25
Q

Propeller twists occur in B-DNA so that
a. Z-DNA can form
b. base pairing distances are optimized
c. base stacking can better occur
d. none of these

A

c

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26
Q

Which of the following best describes the structure of a nucleosome?
a. DNA wrapped around an octomer containing two each of H2A, H2B, H3, and H4 with H1 on the outside.
b. DNA wrapped around an octomer of H1 with H2A,B, H3 & H4 on the outside.
c. DNA wrapped around a octomer of either H2A/H2B or H3/H4 with H1 on the outside.
d. DNA wrapped around a tetramer of either H2A/H2B or H3/H4 with H1 on the outside.
e. None of these

A

a

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27
Q

Which of the following sequences of DNA is most likely to form Z-DNA?
a.
5’-ATCTACATCTACATAGATAT-3’
3’-TAGATGTAGATGTATCTATA-5’

b.
5’-AAAAAAAAAAAAAAAAAAAA-3’
3’-TTTTTTTTTTTTTTTTTTTT-5’

c.
5’-GCGCGCGCGCGCCGCGCGCG-3’
3’-CGCGCGCGCGCGCGCGCGCG-5’

d.
5’-GGGGGGGGGGGGGGGGGGG-3’
3’-CCCCCCCCCCCCCCCCCCCCCC-5’

A

c

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28
Q

Histones contain large amounts of which of the following amino acids?
a. histidine
b. glutamic acid
c. lysine
d. leucine
e. tryptophan

A

c

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29
Q

In DNA structure, hydrophobic bonding via pi-clouds is referred to as
a. base stacking.
b. propeller twist.
c. hyperchromicity.
d. supercoiling.
e. denaturation

A

a

30
Q

Which conclusion can be drawn from the experimental observation that a single strand of DNA contains 2100 dA
residues and 1800 dT residues?
a. There must have been some loss of material in the extraction because the number of dA and dT residues must
be the same.
b. This is a palindromic sequence.
c. There must be 2100 dT and 1800 dA residues on the complementary strand.
d. This must be prokaryotic DNA
e. None of these

A

c

31
Q

The A and B forms of DNA
a. both have 10 base pairs per turn of the helix
b. both have 11 base pairs per turn of the helix
c. are both left-handed helices
d. are both right-handed helices

A

d

32
Q

The human genome has 3 × 109
base pairs (bp) of DNA If this were one continuous molecule and extended such that
each nucleotide was separated from the adjacent nucleotide by 4 Å, as proposed in the Watson and Crick model, what
would the end-to-end distance be?
a. 1 meter
b. 1 centimeter
c. 1000 centimeters
d. 1014 Å

A

a

33
Q

The strands in the double helix
a. both run in the same 3’ → 5’ direction, i.e., they are parallel.
b. have their 3’ → 5’ directions opposed, i.e., they are anti-parallel.
c. can be either parallel or anti-parallel.
d. are perpendicular to one another.
e. None of these

A

b

34
Q

Comparison of DNA sequences between widely diverse organisms indicates that all organisms have genetic similarity.
a. True
b. False

A

a

35
Q

Base pairs with a propeller-twist
a. are found only in Z-DNA
b. have optimum base stacking
c. bind water in the minor groove
d. have stronger hydrogen bonds than base pairs without a propeller twist

A

b

36
Q

Calculate the length/diameter ratio for the extended E. coli DNA
(4Å between adjacent nucleotides).
E. coli DNA has 2 × 10^6 bp.
a. 4 × 10^5
b. 1 × 10^5
c. 3 × 10^8
d. 3 × 10^6

A

a

37
Q

Supercoiling of DNA
a. is not observed in prokaryotes
b. requires the action of topoisomerase enzymes
c. does not require ATP
d. is not observed in eukaryotes

A

b

38
Q

Topoisomerases are associated with
a. production of RNA from DNA.
b. joining of nucleotide monomers to make polynucleotides.
c. supercoiling of DNA.
d. ribosomes.
e. All of these

A

c

39
Q

Which of the following statements concerning the B-form of DNA is false?
a. It twists in a left-handed direction.
b. The distance between base pairs is 3.4Å.
c. The width of a base pair is about 1.1 nm.
d. The diameter, including the phosphate, is about 20 Å.

A

a

40
Q

The three dimensional structure of nucleic acids can include all except:
a. Supercoiling
b. Base stacking
c. Hairpin loops
d. Circular molecules
e. All of these can be included in the three dimensional structure

A

e

41
Q

The helix can be untwisted by the action of which type of topoisomerase?
a. Type I only
b. Type II only
c. Both types I and II
d. Topoisomerases cannot untwist the helix.

A

c

42
Q

The human genome is though to have about how many genes?
a. 10,000
b. 25,000
c. 50,000
d. 100,000
e. None of these is close to the estimate

A

b

43
Q

In the DNA in chromatin, substitution mutations:
a. are at a maximum in the linker regions
b. are at a maximum in the nucleosomes
c. occur maximally in the same places as deletion mutations
d. are rarely seen, but deletion mutations are common

A

b

44
Q

Which piece of DNA will have the higher Tm, one with a cytosine plus guanine content of 30% or one with a cytosine
plus guanine content of 50% if both are heated under the same experimental conditions?

a. 30% cytosine plus guanine will have the higher Tm.
b. 50% cytosine plus guanine will have the higher Tm.
c. Their Tm’s will be the same.
d. There’s no way to predict for this information.

A

b

45
Q

The Tm for melting the double helix is:
a. The temperature at which the helix starts to open.
b. The midpoint of the range over which the helix denatures.
c. The temperature at which the helix is completely open.
d. The energy needed to melt the DNA.
e. None of these is correct.

A

b

46
Q

In a melting profile for DNA, the absorbance at 260 nm increases as result of the disruption of the DNA structure.
What is the fundamental physical basis for the absorbance increase?
a. the effective concentration of DNA changes
b. denatured DNA absorbs light more strongly than native DNA because the bases have become unstacked
c. native DNA absorbs light more strongly than denatured DNA because the bases are stacked
d. the absorbance of DNA is highly sensitive to temperature

A

b

47
Q

The melting profile for a DNA is found to differ in two different salt solutions.
In 0.001 M NaCl, Tm = 55° C, and in 0.01 M NaCl, Tm = 65° C. The fundamental reason for this change is
a. higher salt concentration increases the electrostatic repulsions between phosphates
b. the base stacking is more effective in high salt
c. hydrogen bonding between complementary bases in enhanced at high salt
d. higher salt concentration decreases the electrostatic repulsions between phosphates

A

d

48
Q

Which of the following is not true?
a. The amount of UV absorbance increases, but the wavelength does not change as DNA nears its melting point
b. Once DNA is denatured, it cannot renature
c. The melting temperature partially depends on the GC content
d. The nature of the solvent the DNA is in can affect the melting temperature

A

b

49
Q

The hydrogen bonding interactions in a Watson-Crick AT base-pair involve what units in the adenine base?
a. N-1 and the amino group on C-6
b. N-1 and N-3
c. N-7 and the amino group on C-6
d. N-7 and C-8

A

a

50
Q

Which of the following modifications is likely to happen to the mRNA in a eukaryotic cell?
a. capping of the 5’ end
b. addition of a poly-A tail to the 3’ end
c. removal of intervening sequences (introns)
d. All of the above occur in eukaryotic cells.

A

d

51
Q

Which of the following RNAs is the least abundant in a typical cell?
a. mRNA
b. rRNA
c. snRNA
d. tRNA

A

a

52
Q

Which of the following statements concerning ribosomes is true?
a. They consist of two RNA subunits, one of which is larger than the other.
b. They contain both RNA and protein.
c. They can be dissociated and reassembled by controlling the Mg2+ concentration of the medium.
d. All of these are true.

A

d

53
Q

RNA is hydrolyzed in basic solution, but DNA is not. This occurs because
a. thymine is found in DNA, and uracil is not
b. DNA is double stranded, and RNA is single stranded
c. DNA contains 2’-deoxyribose, but RNA does not
d. RNA has modified bases, but DNA does not

A

c

54
Q

Which of the following statements concerning transfer RNA is true?
a. It has the highest molecular weight of the commonly occurring forms of RNA.
b. It has no internal hydrogen bonding.
c. It bonds to amino acids in the course of protein synthesis.
d. It is the smallest of the RNA types
e. All of these are true.

A

c

55
Q

The most recent discoveries in RNA research are:
a. mRNA and tRNA
b. MiRNA and SiRNA
c. snRNA and snurps
d. tRNA and MiRNA

A

b

56
Q

The three-dimensional structure of transfer RNA has been determined by
a. analytical ultracentrifugation
b. gel electrophoresis
c. ultraviolet spectroscopy
d. x-ray crystallography

A

d

57
Q

In analytical ultracentrifugation the sedimentation coefficient, which is expressed in Svedberg units (S), characterizes
a sedimenting particle on the basis of
a. size only
b. shape only
c. both size and shape
d. neither size nor shape

A

c

58
Q

Eukaryotic mRNA requires
a. less processing after synthesis than prokaryotic mRNA.
b. more processing after synthesis than prokaryotic mRNA.
c. about the same amount of processing after synthesis as prokaryotic mRNA.

A

b

59
Q

The following types of RNA are common to all organisms, except:
a. mRNA
b. rRNA
c. snRNA
d. tRNA
e. All types are found in all organisms.

A

c

60
Q

Which of the following statements concerning small nuclear RNA is true?
a. This RNA is usually found in snurps.
b. This RNA is involved in removing exons from the RNA.
c. This RNA was the first RNA shown to have catalytic activity.
d. This RNA is small in size.
e. All of these describe small nuclear RNA.

A

e

61
Q

Transfer RNA molecules are characterized by all the following, except:
a. They are one of the largest of the RNAs.
b. Cloverleaf shape.
c. Many modified bases.
d. Extensive secondary and tertiary structure.
e. All of these characterize transfer RNA molecules.

A

a

62
Q

The study of DNA changes that are not reflected in the base sequence is called:
a. Molecular biology
b. Histology
c. Epigenetics
d. Physical genetics

A

c

63
Q

Protein synthesis can occur while the mRNA molecule is being synthesized in:
a. Prokaryotes only.
b. Eukaryotes only.
c. Unicellular organisms only.
d. Multicellular organisms only.
e. Plants but not animals

A

a

64
Q

Eukaryotic and prokaryotic ribosomes can be compared in all these ways, except:
a. Both have large and small subunits.
b. Eukaryotic ribosomes are larger.
c. Both contain the same number of RNA molecules.
d. Eukaryotic ribosomes contain more proteins.
e. All of these statements are accurate comparisons.

A

c

65
Q

How does the enzyme ATP(CTP):tRNA nucleotidyletransferase aid in quality control of formation of tRNA?
a. It puts a CCA on the 5’ end
b. It puts a CCA on the 3’ end
c. It puts a CCACCA on the 3’ end of defective tRNA molecules or tRNA-like molelcules that are not true tRNA
d. None of these

A

c

66
Q

Which of the following can be an epigenetic change to chromatin?
a. methylation
b. acetylation
c. phosphorylation
d. All of these
e. None of these

A

d

67
Q

The _____ structure in DNA refers to the supercoiling of the DNA molecule.
a. primary
b. secondary
c. tertiary
d. quaternary

A

c

68
Q

Cytosine is a(n) _____ nitrogenous aromatic compound.
a. one-ring
b. two-ring
c. four-ring
d. six-ring

A

a

69
Q

The glyosidic linkage in a nucleoside forms from the C-1’
carbon of the sugar to the _____.
a. N-9 nitrogen of pyrimidines
b. N-6 nitrogen of purines
c. N-2 nitrogen of purines
d. N-1 nitrogen of pyrimidines

A

d

70
Q

Micro RNA technology is used in the treatment of _____.
a. osteoporosis
b. migraine
c. hepatitis C
d. anaemia

A

c

71
Q

Explain the mechanism of the action of Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) in
treating diseases.

A

Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are repetitive stretches of
DNA found in archaea and bacteria. The sequences interact with CRISPR-associated proteins or
Cas proteins. This combination is used by the bacteria as a protective mechanism against foreign
DNA. The proteins are guided by a short strand of RNA to a specific DNA sequence to cut the
DNA in two pieces. The bacteria take the RNA strand from the invading organism and use it to
target the invader’s DNA

Biochemistry (13 decks)

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