nature of gene and genome lecture 8 Flashcards
who are watson and Crick?
why are they relevant?
watson and crick were 1st to propose structure of DNA and determine a mechanism of how DNA is copied
shape of DNA
DNA has a spiral double helix structure
components of DNA
Nitrogenous base
and repeating units of sugar and phosphate
2 types of nitrogenous bases which ones are H bonded together
purines and pyrimidines
where is DNA found in animal cells
nucleus
Draw nucleus organelle
surrounded by nuclear envelope
has double membrane
what does nucleus contain and state its role
produces ribosome
contains chromosomal DNA
site of DNA replication and transcription
communicates with cytosol via nuclear pore
what is a genome,
where is it located
how many in a cell
each cell nucleus contains identical chromosomes in 2 copies.
each copy is a genome
what is a gene
genes are functional regions of DNA
section of DNA that codes for functional RNA and proteins
how many chromosomes are in human genome
22 pairs of autosome
1 pair of sex chromosome
23 homologous pairs= haploid
46 Homologous chromosomes= diploid
what counts as human genome?
nucleus genes+ Mitochondria genes
what counts as plant genome
chloroplast genome+ nucleus genes
Mitochondrial gene -
how many genes does it contain?
mitochondria contains circular chromosome
mitochondria DNA contains 37 genes- non coding and coding regions(rRNA, tRNA)
Draw+ label homologous chromosomes
-telomere
- centromere
- paternal homolog
- maternal homolog
How is DNA packed into chromosome- stages
Double helix DNA
Nucleosome
chromatin
coiled-coil
chromosome
what is nucleosome?
DNA histone complex
there are 4 core histones which bind to DNA in any combination-
-H2A
-H2B
-H3
-H4
What does central dogma mean
theory that states genetic information flows in one direction only
DNA-RNA-Protein
what is Transcription
synthesis of mRNA from DNA
same language: nucleic acid
translation
protein synthesis from mRNA
different language- nucleic acid to protein
types of nucleic acid
deoxyribonucleic acid and ribonucleic acid
differences B/W DNA and RNA
in DNA sugar is deoxyribose in RNA is ribose
deoxyribose lacks 1 oxygen
2 types of nitrogenous bases
-pyrimidine 1 ring cytosine thymine uracil
-purines 2cyclic rings (adenine and guanine)
what makes a nucleoside
sugar+ base bonded with beta glycosidic linkage
what makes a nucleotide and draw
sugar, base and phosphate
ribonucleotide monomers make RNA polymer
deoxyribonucleotide monomers make DNA polymer
differences B/W deoxyribose and ribose sugar
deoxyribose sugar doesnt have oxygen on carbon 2
how is DNA formed
DNA is a double stranded helix as determined by watson and crick
when 2 mononucleotides join together a molecule of water is eliminated(condensation)
2 polynucleotide strands run antiparalel to each other
5’ - 3’ 3’>5’
bases form h bonds with each other twisting the DNA to form a helical structure
what if importance of nucleotides rather than being just building blocks?
ATP is energy source of cells
ATP is made of nucleotide derivative
complementary base pairing in DNA
occurs B/W complementary bases by H bonding
amount of purine= amount of pyrimidine
ratio of A:T and C:G is one to one
how are grooves made?
2 types of grooves
in the double helix model bases are stacked on top of each other base stacking angles produces 2 grooves
major groove larger angle
minor groove smaller angle
different forms of DNA
- A form- mostly when DNA is dehydrated or in crystaline formor in combination with RNA shorter, more compact, right handed helix
- B-form: most common- right handed
- z form- left handed helix forms as part of stress coiling or interaction with proteins
triplet code, codon
each 3 bases form triplet code on DNA
1 codon= 1 AA Codon is on mRNA
Anticodon is on tRNA
DNA vs RNA
- ribose/ deoxyribose
- RNA is single stranded helix
- ATCG / AUCG
Types of RNA
- messanger RNA- transcript read from DNA
- transfer RNA- translation carries AA to ribosome
anticodon on tRNA pairs with codon on mRNA - ribosomal RNA - eukaryote RNA participate in protein synthesis
tRNA structure and draw it
2D clover leaf structure
H bonds
single stranded folded into a clover shape
aa attachment site
anticodon
what does non coding regions of RNA do
not all RNA codes for protein
remainin are non coding RNA
* rRNA and tRNA
* small nuclear RNA(snRNA) found in nucleus is part of splicing
* small nucleolar RNA(SnoRNA) involved IN methylation of rRNA
* small cytoplasmic RNA(scRNA) plays role in expression of some genes