Multi-Systemic and microdeletion syndromes Flashcards
Williams syndrome genetics
- del 7q11.23
- submicroscopic and requires FISH detection
- deletion includes elastin (ELN) gene, LMPK1
Williams syndrome features
-outgoing, “cocktail party” personality in younger age
-cardiac defects (75% cases)-SVAS near pathognomonic, also PVS, ASD, VSD, aortic hypoplasia and arterial anomalies
-joint hypermobility and lordosis, scoliosis, short stature
-dysmorphic features
+elfin-like facies-smooth philtrum, thin upper lip, puffiness around eyes/periorbital fullness and cheek fullness, medial eyebrow hair
+stellate irides
+micrognathia and teeth abnormalities
-DD, ID, SD
-hypercalcemia
-FTT and feeding difficulties with GI problems
-voice hoarseness, premature graying
VCFS/DiGeorge genetics
-deletion of 22q11.2
+includes TBX1
-relatively common-incidence of 1 in ~2000
-10% inherited
-mutation effects migration of neural crest cells to 3rd and 4th pharyngeal pouches, causes structural defects of cardiac outflow tract, and hypoplasia of the thymus and parathyroid glands
22q11.2 deletion syndrome features
-dysmorphic features
+Hooded eyelids
+prominent nose with squared nasal root, bulbous tip
+ear anomalies
+sometimes asymmetric crying face
+malar hypoplasia/underdeveloped cheek bones
-clefting, hypernasal speech and nasal regurgitation related to velopharyngeal incompetence, SD
-LD, ID, DD, psychiatric issues
-cardiac anomalies and CHDs
-hypocalcemia due to hypoparathyroidsim and T-cell/immuno deficiency due to thymic hypo/aplasia
-GU and GI anomalies
Miller-Dieker genetics
- 17p13.3 deletion
- requires FISH or molecular dx, but 50% patients have visible deletions on karyotype; varying size
- loss of LIS1 associated with Lissencephaly and failed neuronal migration
Miller-Dieker features
-dysmorphic features
+micrognathia and thin vermillion border with protuberant upper lip
+tall, prominent forehead with bitemoporal hollowing, vertical ridging or furrowing of forehead
+upslanting palpebral fissures
+short, upturned nose with anteverted nares
-type 1 lissencephaly (smooth brain) leading to microcephaly, ID, seizures, spasticity
-hypotonia, feeding difficulties
-breathing difficulties
-leads to early death without ability to meet milestones
Smith-Magenis genetics
17p11.2 deletion
Smith-Magenis features
-dysmorphic features
+brachycephaly, midface hypoplasia with prognathism
-ID, behavioral problems (self-destructive, sleep disturbance)
-GR
-peripheral neuropathy
-voice hoarseness
1p36 deletion genetics
-contiguous gene deletion of 1p36 region
+can have variable breakpoints unlike most other CGD syndromes-terminal or interstitial
-0.5-1.2% of all idiopathic ID, prevalence of 1 in ~5000
-detection
+can be seen on karyo, but sometimes missed with G-bands
+FISH-telomere studies and 1p36 probe
+easily identified by MCA
1p36 features
-microbrachycephaly and structural brain anomalies \+moderate to severe ID \+seizures (>50%) \+behavioral probs-self-injurous behaviors, biting, tantrums -hypotonia -hearing problems -skeletal anomalies -CNS, GI and GU anomalies -facies \+straight eyebrows with deep-set eyes \+midface hypoplasia \+long philtrum \+pointed chin
McDermid-Phelan Syndrome genetics
- 22q13 deletion sydrome
- deletion of SHANK3 gene
- detected by FISH
McDermid-Phelan features
- widely variable
- ID and severe speech delay
- hypotonia
- mild facial dysmorphism
- sometimes ASD, behavioral probs, seizures
- GI, renal, heart problems
1q21.1 abnormalities
-can have dups and dels
+del with variable phenotype (mild-moderate ID, microcephaly, cataracts, neuropsychiatric disorders, cardiac anomalies
+dup with variable phenotype (ID, ASD, neuropsychiatric conditions, macrocephaly, dysmorphic features)
-parents with aberrations may also have phenotype
15q13.3 deletion syndrome
-normally 1.5 Mb del
+often inherited
+low CNR-non-allelic homologous recombination
+can involve CHRNA7, which lesser defines phenotype if this is the only gene deleted
-variable phenotype
+mild ID (50%)
+neuropsychiatric conditions, behavioral problems
+seizures
16p11.2 anomalies
- both dels and dups (low CNRs)
- may be inherited from a parent without phenotype
- affected child could have ASD, minor facial anomalies, speech delay
16p13.11 aberrations
-both dels and dups (low CNRs)
+deletion phenotype better established
-inherited from parents with zero or mild features
-variable phenotype with neuropsychiatric disorders, dysmorphic features and CHDs
17q12 deletion syndrome
-~1.5Mb deletion \+mostly related to low CNRs and NAHR \+TCF2 and LHX genes involved -presents like MODY-"MODY5" -renal cystic dysplasia, renal hypoplasia, abnormal renal function, cryptorchidism, elevated renal enzymes
17q12 microduplication syndrome
-~1.5Mb duplication
+mostly related to low CNRs and NAHR
-can be de novo or inherited from non/mildly affected parents
-can cause cognitive impairment, epilepsy, dysmorphic features, renal anomalies
15q24 deletion syndrome
-min of 1.7Mb deletion
+low CNRs & NAHR
+P450sec involved
-all reported de novo in literature
-delayed bone age with elevated serum triglycerides
-hypospadius, cryptorchidism, joint laxity, bowel atresia, scoliosis, growth hormone deficiency
P450sec
mitochondrial cholesterol cleavage enzyme
1q41-1q42 deletion syndrome
-~1.17Mb deletion
+DISP1 involvement
-mechanism unknown, all cases de novo
-presents like Fryn’s syndrome
+gyral malformations, small cerebellum, enlarged ventricles
+cleft palate, talipes, diaphragmatic hernia
2p15-2p16.1 deletion syndrome
-min of 200kb deletion
+VRK2 involvment
-unknown mechanism, all cases de novo
-pachygyria, fourth ventricle enlargement, brain stem and cerebellar hypoplasia
-optic nerve hypoplasia, renal anomalies, leg spasticity, high-arched palate, calcaneovalgus
prenatal microarray limitations
cannot find balanced rearrangements and triploidy by SNP
prenatal microarray detection
- 6.0% cases with ultrasound finding had a clinically relevant del/dup not detectable by karyo
- 1.7% of cases referred for AMA or positive serum screen had a finding
Rubinstein-Taybi Genetics
-incidence of 1 in 100000-1 in 125000
-most commonly see de novo mutations in CREBBP, though microdeletion of 16p13.3 (includes gene) can be seen in 10% cases
+3% due to EP300
Rubinstein-Taybi phenotype
-broad thumbs and great toes, possible with deviation
-postnatal growth deficiency
-facies
+downslanting palpebral fissures
+prominent or beaked nose longer septum than nostril wings with maxillary hypoplasia
+hirsuitism-heavy arched eyebrows, long eyelashes
+cardiac defects in 1/3-PDA, VSD, ASD
-moderate ID
Treacher Collins genetics
-incidence of 1 in 50000
-most commonly due to AD mutation of TCOF1
+failure of treacle protein to allow neural crest migration in 1st and 2nd pharyngeal pouches
+POLR1C, POLR1D can also be implicated
Treacher Collins phenotype
craniofacial disorder with malar hypoplasia and zygomatic bone cleft
-lower eyelid coloboma with absent eyelashes in the area of defect and down slanting palpebral fissures
-projection of scalp hair onto lateral cheek
-microtia and external ear malformation with CHL
-micrognathia
+obstructive apnea is main concern in newborns
Cornelia de Lange genetics
- incidence of 1 in 50000
- mostly due to AD mutation of NIPBL; rarer gene mutations inherited in AD and XL (SMC1A) manner
- usually sporadic
Cornelia de Lange phenotype
- IUGR, LBW, FTT
- microcephaly with mild to severe ID
- voice hoarseness
- hirsuitism with bushy eyebrows, synophrys (unibrow), long curly eyelashes
- depressed nasal bridge, anteverted nares
- thin upper lip
- cutis marmorata-mottled red-purple rash
- micromelia, oligodactly or 5th finger clinodactly, flexion contracture of elbow, syndactly of 2nd-3rd toes
- GI and GU anomalies
Stickler syndrome genetics
-1 in 10000
-caused by AD mutation of COL2A1, COL11A1 or COL11A2
+note mutations in COL2A1 can also cause achondrogenesis II, Kneist dysplasia, SED congenita and hypochondrogenesis
+rare AR mutations in COL9A1 can also occur
Stickler syndrome phenotype
-flattened face/profile with depressed nasal bridge and prominent eyes
-eye anomalies including high myopia/nearsightedness, cataracts and retinal detachment or vitreoretinal degeneration
-Pierre Robin sequence or isolated palatal hard or soft palate cleating, with or without bifid uvula
-hearing loss
-joint hyper mobility, widening of joints (epiphyseal dysplasia) with early arthritis onset
+marfanoid body habitus
Kabuki syndrome genetics
-incidence of ~1 in 30000-1 in 70000
-caused by AD mutation of MLL2
+first found by WES
Kabuki phenotype
- significant postnatal growth deficiency
- eversion (out-turning) of lateral portion of lower eyelid, long palpebral fissures
- arched eyebrows with a sparse lateral third
- prominent abnormal ears
- short nose that gives appearance of long philtrum
- 50% with CHD (coarctation, MVP, BAV)
- moderate ID
- persistance of fetal fingertip pads, shortened 5th finger, joint hyper mobility
NF1 genetics
- incidence 1 in 3000
- AD mutation of NF1 gene
NF1 features
- CaLMs and other abnormal skin findings
- eye findings
- predisposition to CNS tumors (optic glioma, neurofibroadenomas, rarely peripheral nerve sheath tumors)
- relative macrocephaly with ID, DD, LD, ASD, ADHD
NF1 diagnostic criteria
-6 or greater CaLMs (often seen before 1y)
+at least 5mm before puberty, 15mm after
+typically rounded with smooth borders
-inguinal or axillary freckling
-2 or more neurofibromas or 1 plexiform (usually by 10-20y)
-2 or more Lisch nodules/iris hamartoma (usually seen by 10y)
-optic glioma
-tibial pseudoarthritis or sphenoid wing dysplasia (osseous lesion)
-1st degree relative with NF1
Noonan syndrome genetics
-incidence of 1 in 1000-1 in 2500
-due to AD mutations of PTPN11, SOS1, KRAS, RAF1, etc
+effecting the MAPK pathways
-some genotype phenotype correlations
-known and overlap with other conditions
+cardiofaciocutaneous syndrome, Costello
Noonan phenotype
-short stature
-CHDs: pulmonic valve stenosis most commonly, ToF, ASD
+HCM also common (especially with RAF1, RIT1)
-variability of DD
-eye abnormalities: hypertelorism of light colored eyes, down slanting PFs, thick eyelids, ptosis, strabismus, nystagmus, refractive errors
-triangular face shape
-posteriorly rotated ears with fleshy helices
-pectus or shield chest, broadened and webbed neck
-low posterior hairline, curly hair (sparse, wispy hair in LAH subtype, curly hair especially in Costello)
-cryptorchidism in males
-bleeding diathesis due to premature apoptosis and lymphatic dysplasia
-skin anomalies such as freckling, lentigines, CaLMs
CHARGE syndrome genetics
- incidence of 1 in 10000
- AD mutation of CDH7
CHARGE defects
-coloboma-of iris, retina, optic disc
-CHDs-ToF, VSD, DORV, tricuspid atresia
-choanal atresia
+u/l or b/l and can be just stenosis
+CN dysfunction can cause hypo or anosmia
-restricted growth and development
-GU anomalies-hypotrophic hypogonadism, cryptorchidism
+GI and TE fistula may also occur
-ear anomalies and hearing loss
+Mondini defect of cochlea is characteristic
+can see outer ear deformity, ossicular defects and hypoplastic semi-circular canal
CHARGE facies
-square face shape with mid face hypoplasia, broad prominent forehead, prominent nasal bridge
+CNS problems can cause facial palsy
+sometimes clefting
-ear anomalies-low set cup shape visible to outside
-nose anomalies