Molecular genetics - DNA Flashcards

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1
Q

What are the three components of nucleotides

A

Deoxyribose sugar, Phosphate group, nitrogenous base

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2
Q

What are purines?

A

Double ringed structures. Guanine and Adenine

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3
Q

What are purines?

A

Single ringed structures. Thymine, Uracil and Cytosine

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4
Q

What are the three bonds on DNA’s backbone?

A

Glycosyl, phosphodiester, hydrogen bonds

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5
Q

The 2 DNA strands are ______ but are ______

A

not identical, complementary

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6
Q

How do complementary bases bond?

A

Purine to pyrimidine

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7
Q

What are the complementary bases?

A

Adenine to Thymine (or Uracil in RNA), Cytosine to Guanine

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8
Q

What is Chargaff’s rule?

A

% composition of Adenine is the same as that of Thymine and % composition of Cytosine is the same as that of Guanine

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9
Q

What does it mean that DNA strands are antiparallel?

A

The two strands run in opposite directions, one runs 3’ to 5’ and the other 5’ to 3’

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10
Q

How big is one turn of the helix?

A

3.4nm

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11
Q

What is the distance between nucleotides?

A

0.34

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12
Q

How many nucleotides in one turn of the helix?

A

10

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13
Q

What is the diameter of the helix?

A

2nm

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14
Q

Genome

A

Complete genetic make-up of an organism

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15
Q

Gene

A

Basic unit of heredity. Functional units of DNA. The coding sequences for proteins.

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16
Q

Nucleoid

A

Structure in prokaryotes that contains the chromosomal DNA

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17
Q

Regulatory sequence

A

A sequence of DNA that regulates the activity of a gene

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18
Q

Where is DNA found in prokaryotes?

A

In one circular chromosome, the nucleoid

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19
Q

The nucleoid is made of supercoiled DNA. What controls that supercoiling?

A

Topoisomerase I and Topoisomerase II

20
Q

What is the point of antibiotics

A

To inhibit topoisomerase

21
Q

Where is eukaryotic DNA found

A

Nucleus

22
Q

Histone

A

A protein that helps to compact DNA

23
Q

Nucleosome

A

The condensed structure formed when double stranded DNA wraps around an octamer of histone

24
Q

Chromatin

A

Non-condensed form of genetic material made of DNA and proteins. This is how DNA fits in a cell

25
Q

What must DNA be able to do efficiently

A

Replicate with a high degree of accuracy and code for production of proteins by the cell

26
Q

What happens during Mitosis?

A

Cells divide into 2 daughter cells with identical DNA

27
Q

What method of replication does DNA use? Explain it

A

Semi-conservative replication. One strand of the DNA is used to create the second one

28
Q

Explain the initiation phase of DNA replication

A

A portion of the double helix is unwound and the bases are exposed for base pairing

29
Q

Explain the elongation phase

A

2 new strands of DNA are assembled using the parent DNA as a template. New strand and old strand for helices

30
Q

Termination phase

A

Replication process completed & the two strands separate from each other. Replication machine disassembled.

31
Q

Helicase

A

Unwinds parent DNA

32
Q

DNA primase

A

Synthesizes DNA primer to generate Okazaki fragments

33
Q

Single Stranded Binding Proteins (SSBPs)

A

Helps to stabilize single-stranded regions of DNA when it unwinds. Prevents annealing

34
Q

Topoisomerase II

A

Relieves strain on parent chain generated by the unwinding of the two strands

35
Q

DNA polymerases

A

Synthesizes new Daughter strands, removes RNA primers and fills the gaps from Okazaki fragments. Proofread new DNA

36
Q

Ligase

A

Joins the ends of Okazaki fragments in lagging strand fragments

37
Q

Primer

A

Short segment of RNA that is complementary to a part of the 3’ to 5’ DNA template strand and serves as a starting point for additional nucleotides.

38
Q

Replication bubbles

A

There are many origins to DNA replication, which forms many replication forks. They end up looking like bubbles

39
Q

In what direction is DNA synthesized? Why?

A

5’ to 3’ because the enzyme binds to the parent strand at the 3’ end

40
Q

What is the role of DNA polymerase in the elongation phase?

A

To proofread

41
Q

What is the role of ligase in the elongation phase?

A

To stitch together okazaki fragments

42
Q

Okazaki fragments

A

Short DNA fragments generated during synthesis of the lagging strand in DNA replication

43
Q

Mismatch repair

A

mechanism for repairing errors made during DNA replication. A group of proteins recognize an error and therefore replace the the nucleotide

44
Q

Do prokaryotes or eukaryotes have a faster replication rate?

A

Prokaryotes, 1000 nucleotides per second added as opposed to eukaryotes’ 40 nucleotides per second

45
Q

How many polymerase enzymes in prokaryotes?

A

5

46
Q

How many polymerase enzymes in eukaryotes?

A

13

47
Q

Telomere

A

Repetitive section of DNA near the end of each chromosome. This helps to prevent the loss of important genetic information during the replication of linear eukaryotic DNA