Molecular Genetics: Chapters 17-20 Flashcards
Phoebus Levene contributions to DNA
- Isolated two types of nucleic acid, DNA (deoxyribose nucleic acid) and RNA (ribose nucleic acid)
- Proved that chromosomes are made up of DNA and proteins
- Genes are located on the chromosome
Frederick Griffith contributions to DNA
• Studied the pathogenic (disease-causing) bacteria that was responsible for pneumonia
- Used dead Streptococcus pneumoniae bacteria as control. This dead bacteria still passed their pathogenic properties to live, non-pathogenic bacteria. This created the transforming principle.
Transforming principle
• Ability of dead pathogenic bacteria to pass on their disease-causing properties to live, non-pathogenic bacteria.
Oswald Avery, Colin MacLeod, and Maclyn McCarty contributions to DNA
→ Expanded on Griffith’s transforming principle to determine what was the agent of
transformation.
• When they treated heat-killed pathogenic bacteria with a protein-destroying enzyme, transformation still occurred.
• When they treated heat-killed pathogenic bacteria with a DNA-destroying enzyme, transformation did not occur.
Alfred Hershey and Martha Chase contributions to DNA
→ Wanted to determine whether viral protein or viral DNA was responsible for taking over the genetic machinery of the host cell.
• Used radioactive labelling to show that genes are made up of DNA. Scientists knew that virtually all of the phosphorus present in the T2 virus is in its DNA, while sulphur is found only in its protein coat. Prepared two different samples of the T2 virus, one tagged with radioactive phosphorus and other with radioactive sulfur. Bacterial cells that were infected by viruses with radioactive DNA were radioactive, indicating that the viral DNA entered the host cell. In contrast, bacterial cells that were infected by viruses with radioactive protein coats were not radioactive, indicating that no viral protein entered the host cell. Therefore, DNA must direct the cell to produce new viruses.
• The T2 bacteriophage consists of a protein coat surrounding a length of DNA. The virus attaches to a bacterial cell and injects genetic information into the cell. The infected cell manufactures new viruses and bursts, infecting other cells
→ Concluded that viral DNA, not viral protein, enters the bacterial cell.
Rosalind Franklin contributions to DNA
Used x-ray photography to analyze the structure of DNA.
- Concluded that DNA is a helical structure with two regularly repeating patterns, one recurring at intervals of 0.34nm, and the other with intervals of 3.4nm.
- Also observed how DNA reacted with water and concluded that the nitrogenous bases were located on the inside of the helical structure, and the sugar-phosphate backbone was located on the outside, facing toward the watery nucleus of the cell.
DNA (deoxyribonucleic acid)
Nucleic acid molecule that governs the processes of heredity in all plant and animal cells.
- Made up of long chains of individual units that Levene called nucleotides.
- Both DNA and RNA contain a combination of four different nucleotides.
- Each DNA nucleotide is composed of a five-carbon sugar, a phosphate group, and one of five nitrogen-containing bases.
- The four bases that are found in nucleotides are adenine (A), guanine (G), cytosine (C), and thymine (T). (RNA has the base uracil (U) instead of thymine). Scientists identify the nucleotides by referring to their bases: A, G, C, T for DNA, and A, G, C, and U for RNA.
Nucleotides
Units making up nucleic acids (ex. DNA, RNA), composed of a five-carbon sugar, a phosphate group, and one of five nitrogen-containing bases (adenine, cytosine, guanine, and either thymine or uracil).
- Levene determined that nucleic acids are made up of long chains of nucleotides. (He also incorrectly thought that nucleotides were present in equal amounts and that they appeared in these chains in a constant and repeated sequence.
Chargaff’s rule
Created by Erwin Chargaff. In any sample of DNA, a constant relationship in which the amount of adenine is always approximately equal to the amount of thymine, and the amount of cytosine is always approximately equal to the about of guanine.
• A ~ T
• C ~ G
James Watson and Francis Crick contribution to DNA
First to produce a structural model of DNA that could account for experimental evidence. They created the double-helix model.
• DNA is a thread-like molecule, made up of two long strands of nucleotides that are bound together in a spiral shape; the double-helix. If the helix was unwound, the DNA molecule would look like a ladder.
- The “handrails” of the ladder are the sugar-phosphate backbones of the two nucleotide strands. The “rungs” are the bases that protrude inward at regular intervals along each strand.
• Knew that sugar-phosphate handrails remained constant over the length of the molecule. However, the nitrogenous bases are different sizes.
- Adenine and guanine are derived from purine compounds, which have a double-ring structure.
- Thymine and cytosine are derived from pyrimidines, which have a single-ring structure.
- Using Chargaff’s rule, Watson and Crick hit up on the idea that an A nucleotide on one chain always sits across from a T nucleotide on the other chain, while a C nucleotide on one chain always sits across from a G nucleotide on the other chain. The A-T and C-G pairs are complementary pairs that are hydrogen-bonded.
- The handrails maintain a constant total distance of three rings.
- The two strands of DNA that make the double helix are not identical. They are complementary to each other, and are antiparallel. You can always deduce the base sequence on one strand from the base sequence on the other strand. Phosphate bridges run in opposite directions in two strands. Each end of a double-stranded DNA molecule contains the 5’ end of one strand and the 3’ end of the complementary strand. **This is important for DNA replication and protein synthesis.
Antiparallel
Describes the property by which the 5’ to 3’ phosphate bridges run in opposite directions on each strand of nucleotides in a double-stranded DNA molecule.
Similarities between DNA and RNA
- Are both nucleic acids
- Found in most bacteria
- Found in the nuclei of most eukaryotic cells
- Similar structures
Differences between DNA and RNA
- The sugar component of RNA is ribose rather than deoxyribose.
- RNA doesn’t have the nucleotide (T). Instead it is the nucleotide uracil (U).
- RNA remains single-stranded, although the single strand can sometimes fold back on itself to produce regions of complementary base pairs.
- RNA molecule can assume different structures which results in several types of RNA, each serving a different function.
Gene
Functional subunit of DNA that directs the production of one or more polypeptides (protein molecules).
* Genes are not spaced regularly among chromosomes.
Genome
Sum of all the DNA that is carried in each cell of the organism. This DNA includes genes as well as regions of noncoding DNA which can play a part in gene expression.
- There is no relationship between the number of genes in an organism and the total size of its genome.
- The total human genome is about three billion base pairs, ~20 000 to 25 000 genes.
Replication
In genetics, refers to the reproduction of an exact copy of genetic material, a cell, or an organism.
- Cell replicates its entire genome in the S phase, and only once in the whole cell cycle. Only has an error rate of about one per one billion nucleotide pairs.
Semi-conservative
Term used to describe replication: each new molecule of DNA contains one strand of the original complementary DNA and one new strand, thus conserving half of the molecule.
- The process of replication is called a sequence, but actually takes place simultaneously.
Process of DNA replication
- Starts at a specific nucleotide sequence, aka the replication origin
- Enzymes called helicases bind to the DNA at the replication origin.
- Helicases cleave and unravel a short segment of the double helix
- Two Y-shaped areas are created (replication fork) at the each end of the unwound area which creates a replication bubble.
- Molecule is ready for replication
Elongation and Termination of DNA replication
- The enzyme DNA polymerase attaches to new nucleotides to the free 3’ hydroxyl end of a pre-existing chain of nucleotides.
- DNA polymerase starts at a RNA primer, which initiates the process of replication
- Elongation only occurs at the 5’ - 3’ direction, which is the leading strand, which is replicated continuously
- The lagging 3’ - 5’ strand is replicated in short segments, backwards. The DNA synthesized on the lagging strand in short segments are Okazaki fragments.
- Okazaki fragments are spliced together by DNA ligase.
- Termination occurs, and the result is two new DNA strands and dismantling of the replication machine.
Leading strand
In DNA replication, the 5’ - 3’ strand that is replicated continuously
Lagging strand
In DNA replication, the 3’ - 5’ strand that is replicated in short segments (Okazaki fragments)
Okazaki fragments
Short nucleotide fragments synthesized during DNA replication of the lagging strand
DNA ligase
Enzyme that splices together Okazaki fragments during DNA replication on the lagging strand. Also proofreads each nucleotide, determining whether or not hydrogen bonding has taken place between the base and new strand. (No hydrogen bond indicates mismatch between bases)
Replication machine (RM)
Complex involving dozens of different enzymes and other proteins that work closely together in the process of DNA replication and interact at the replication fork.
Termination
In DNA replication, the completion of the new DNA strands and the dismantling of the replication machine.
Primase
Synthesizes an RNA primer to begin the elongation process.
Gene expression
The transfer of genetic information from DNA to RNA to protein. The flow of genetic information from DNA to RNA to protein is aka the “central dogma” of gene expression.
Transcription
The first stage of gene expression, in which a strand of messenger RNA (mRNA) is produced that is complementary to a segment of DNA. DNA is copied into the mRNA. Takes place in the nucleus of a eukaryotic cell.
Translation
The second stage of gene expression, in which the mRNA nucleotide sequence directs the synthesis (coming together) of a polypeptide (a chain of amino acids) with the aid of another molecule, transfer RNA (tRNA).
Messenger RNA (mRNA)
Strand of RNA that carries genetic information from DNA to the protein synthesis machinery of the cell during transcription.
Transfer RNA (tRNA)
Type of RNA that works with mRNA to direct the synthesis of a polypeptide in translation.
Genetic code
The order of base pairs in a DNA molecule.
- Base pairs are made up of amino acids.
- Determines how the amino acids are strung together and how the proteins are made. *The order of nucleotides in a gene provides the information, written in genetic code, that is necessary to build a protein.
Amino acids
An organic compound consisting of a carboxylic acid group (COOH) an amino group (NH2), and any various side groups, linked together by peptide bonds to form proteins.
- Specific sequence of amino acids determine the chemical properties of each protein.
- Are what make up proteins, which determine the structure, function and development of the cell and are responsible for inherited traits.
Codon
In a gene, each set of three bases (e.g. ACC or GAA) that code for an amino acid or a termination signal.
- Genetic code is always interpreted in terms of the mRNA codon rather than the nucleotide sequence of the original DNA strand.
- The three codon letters identifies the amino acid that responds to the codon.
Start codon and amino acid
AUG - Methionine
Stop codons
UAA, UAG, and UGA