Molecular Aspects of Neoplasia Flashcards

1
Q

What is a driver vs passenger mutation?

A

Driver mutation - genetic mutation providing a growth advantage to a precursor cell

Passenger mutation - genetic mutation providing no appreciable effect on cellular growth

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2
Q

What are the three types of driver mutations which can lead to tumor progression (increased virulence)?

A

Mutations or epigenetic changes in:

  1. Proto-oncogenes -> dominant growth promoters
  2. Tumor suppressor genes -> recessive (two changes required) growth inhibitors
  3. Apoptosis-regulating genes -> inhibition of apoptosis leads to increased cell number over time
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3
Q

What class of mutations predisposes to these driver mutations?

A

Defects in DNA repair genes -> genomic instability

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4
Q

Is a given tumor one homogenous group of cells? Why?

A

No, as they continually acquire driver mutations progressing to higher virulence, different sections of the tumor will multiply and make up a large portion. Each section has one “mother cell” which spawns a large group of cells with a growth advantage before the next major mutation

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5
Q

How does a tumor induce self-sufficiency in growth signals? What type of mutation is this?

A

Typically, by activation of protooncogenes to oncogenes which produce oncoproteins, increasing cellular proliferation

This is a “dominant” mutation since it is gain-of-function

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6
Q

Give a few proto-oncogenes which can be mutated for a self-sufficiency in growth signals.

A
  1. Overexpression of growth factor genes -> autocrine growth factors
  2. Growth factor receptors -> I.e. EGFR2/HER2
  3. Signal-tranducing proteins -> i.e. Ras
  4. Nuclear transcription factors -> i.e. MYC translocation or overproduction
  5. Overexpression of cyclin / CDK’s
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7
Q

How can cell over-proliferation predispose to further mutations?

A

Rapidly diving cells accumulate mutations faster

-> often, hyperproliferation conditions will lead to dysplasia and eventual carcinoma

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8
Q

Why does overexpression of HER2 result in increased cell proliferation?

A

Not only an increased responsiveness to growth factors, but activation of receptors without growth factors
-> if they are high enough density, they will dimerize without a growth signal

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9
Q

What is the most common type of Ras mutation?

A

Point mutations leading to resistance to GAPs (GTPase-activating proteins, like NF-1)
-> mutant RAS proteins remain in GTP-bound, active state with continuous mitogenic signalling

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10
Q

What gene is translocated from chromosome 9 to chromosome 22 in CML? What is the result?

A

ABL gene -> encodes some tyrosine kinase involved in mitogenesis

BCR-ABL fusion gene product is made with increased tyrosine kinase activity

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11
Q

Why can translocation of a protein like MYC lead to increased expression?

A

If it is under control of a frequently active promoter, transcription will be greatly increased

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12
Q

Are tumor suppressor genes oncogenes? Why or why not?

A

No -> when they are active, their are not pro-growth.

You need “two hits” to knock out their function and lead to uncontrolled cell growth -> recessive

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13
Q

What is normally the second alteration which allows for “Insensitivity to Growth-Inhibitory Signals”?

A

Loss of heterozygosity, most frequently due to DNA methylation

-> one copy of the tumor suppressor gene has already been knocked out by a deletion / point mutation

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14
Q

What are the two main pathways by which tumor suppressor genes are knocked out?

A
  1. Inherited mutation in one of the gene (this predisposition is considered dominant, but overall it’s recessive since you need a ‘second hit’ to knock out protein functioning) -> i.e. Li-Fraumeni syndrome, with germline mutations in TP53
  2. Sporadic malignancies -> both alleles are knocked out sporadically
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15
Q

What are the two most commonly altered tumor suppressor genes? Which is most common?

A
  1. TP53 gene - most common - loss of normal p53 function - “guardian of the genome” -> genetically damaged cells are able to propogate
  2. Rb gene - loss of RB function in inhibiting the G1->S transition, normally preventing E2F from dissociating in its hypophosphorylated state - “gatekeeper of G1/S”
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16
Q

What type of gene is the APC gene and how does it predispose to cancer?

A

Tumor suppressor gene
APC normally binds onto Beta-catenin, a protein associated with E-cadherin, inhibiting B-catenin from pushing colon epithelial cells thru the cell cycle.

APC dissociates whenever WNT growth signal comes in. If APC is mutated, it will dissociate even in the absence of WNT -> APC mutations are the drivers for most colon carcinomas

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17
Q

What type of genes are NF-1 and p21?

A

Tumor suppressors

NF-1 = GTPase-activating protein
p21 = CDKI
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18
Q

How do cancer cells promote growth through cellular metabolic alterations?

A

Via the Warburg effect -> metabolic switch to glycolysis in aerobic conditions -> rapid, inefficient energy production with carbon skeletons from glucose going towards synthesizing macromolecules / organelles rather than full oxidation.

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19
Q

What pathway of apoptosis is most frequently mutated in cancer, and how is this done?

A

Intrinsic (mitochondrial) pathway
Increased expression of anti-apoptotic genes -> Bcl-2
Decreased expression of pro-apoptotic genes -> BAX/BAK

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20
Q

How do cells acquire limitless replicative potential?

A
  1. Telomere maintenance by reactivation of telomerase activity
  2. Evasion of senescence by inhibiting p53 / Rb
  3. Capacity for self-renewal, there are “cancer stem cells”
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21
Q

What is the largest a tumor can get without additional blood vessel growth, and what needs to be done for this to occur?

A

1-2 mm

Need angiogenic switch -> increased production of VEGF / FGF which promote angiogenesis, allowing more new vessels and increased metastatic potential

22
Q

What are the steps by which cancer cells invade the ECM? Does it depend solely on them?

A

No - it also depends on inducible characteristics of the surrounding stroma

  1. Detachment of malignant cells -> loss of adhesion via E-cadherin
  2. Enzymatic degradation of ECM
  3. Tumor cell attachment to ECM
  4. Migration and invasion into ECM
23
Q

How does enzymatic degradation of the ECM occur? What will this cause?

A

Malignant cells secrete proteases, and surrounding stroma / inflammatory cells will also release proteases.

This causes release of angiogenic, chemotactic, and growth factors which are normally sequestered in the ECM

24
Q

How do tumors attach to the ECM?

A

They express receptors for various components of the ECM, like laminin and collagen

25
Q

How do tumors migrate and invade into the ECM?

A

Cytokines and growth factors of ECM lead to an epithelial -> mesenchymal transition, with upregulation of actin, which gives them more motility

26
Q

How do tumor cells form circulating tumor emboli?

A

They adhere to eachother, than adhere to platelets via heterotypic adhesions, and can even activate the coagulation cascade to get fibrin to coat them as they embolize to distant tissues

27
Q

How do malignant cells adhere to distant sites via tumor emboli? How does this relate to where they spread?

A

They adhere via complementary ligand-receptor interaction to endothelium at certain sites -> explains why some tumors have tropism to certain sites of metastasis.

28
Q

Once at the site of metastasis, how do they invade and spread?

A

Invade via secretion of proteases to get through basement membrane and endothelium, they use cytokines and growth factors to set up shop at new site

29
Q

What type of mutation is a defect in DNA repair genes, and does this directly or indirectly cause cancer?

A

Loss-of-function mutation

Indirectly causes cancer by being unable to stop mutations to proto-oncogenes, tumor suppressor genes, or apoptosis genes. This mutations accumulate due to external factors (UV radiation, chemicals) or internal (ROS, DNA replication failures).

Direct would be something like mutations to tumor suppressor genes.

30
Q

How is defective mismatch repair identified? Give an example.

A

Via the presence of DNA microsatellite instability -> change in number of short, repeated sequences of DNA
-> Can cause frameshift mutations if not in multiples of three and lead to cancer

Example: hereditary nonpolyposis colon carcinoma (HNPCC -> familial cancers of colon, especially cecum and right colon

31
Q

What type of DNA repair abnormality causes xeroderma pigmentosum, and what characterizes this condition?

A

Defective nucleotide excision repair
-> inability to correct pyrimidine cross-linked (i.e. thymidine dimers) caused by UV radiation

Condition characterized by extreme sensitivity to sunlight with increased in sunburns, freckling, and skin cancers

32
Q

What does defective homologous recombination repair cause, and give an example gene.

A

Impaired detection of DNA damage (especially double-stranded breaks), impaired cell cycle arrest, and impaired error free recombination DNA repair.

BRCA1 / BRCA2 which cause breast cancer / ovarian carcinoma syndromes when mutated are involved in repairing DNA after double-stranded breaks via using homologous recombination.

33
Q

What is the most common type of structural DNA alteration which causes cancer? Give two things this can do.

A

Translocation
-> 1. Overexpression of carcinogenic genes (i.e. MYC, Cyclin D1, Bcl-2)

-> 2. Fusion gene productions (i.e. ABL-BCR in CML)

34
Q

How can gene amplification be quantitatively detected?

A
  1. Presence of chromosomal double minutes - very small accessory chromosomes with oncogenic gene product
  2. Homogenous staining regions - Presence of duplicated oncogene leads to homogenous staining
35
Q

What is chromothripsis?

A

Chromosome shattering -> a DNA alteration with multiple chromosomal breaks with loss of some chromosome segments, causing cancer

-> one massive event

36
Q

Give two examples of carcinogenic gene dysregulation which can occur without structural changes in DNA.

A
  1. Epigenetic changes -> defects in methylation and histone modification, as in silencing of a second gene involved in tumor suppression
  2. Altered expression of noncoding RNAs -> regulatory effects can be carcinogenic, changing expression of certain mRNAs.
37
Q

What is a “caretaker” vs “gatekeeper” gene?

A

Caretaker - protect the genome - alterations will INDIRECTLY predispose to cancer - i.e. DNA repair genes

Gatekeeper - DIRECTLY control cell proliferation, alterations will cause cancer. I.e. Oncogenes, tumor suppressor genes (p53, RB)

38
Q

What are the two events involved in chemical carcinogenesis? What order must they occur in?

A
  1. Initation - irreversible damage to DNA which cannot be repaired
  2. Promotion - temporary induction of cellular proliferation

Exposure to initiator must occur before exposure to promoter, and neither exposure alone can induce carcinogenesis.

Repeated replications under these conditions increase chance of further mutagenesis

39
Q

What are the two types of initiators and which is more common?

A
  1. Direct-acting carcinogens -> i.e. alkylating agents like nitrogen mustard, require no metabolic conversion to become carcinogenic
  2. Indirect-acting initiators (procarcinogens) -> require metabolic transformation to ultimate carcinogens. i.e. benzo[a]pyrene in cigarette smoke, beta-Naphthylamine for bladder cancer in aniline dye
40
Q

What is Aflatoxin B1?

A

Fungal metabolite produced by Aspergillus flavus, an indirect-acting initiator.

41
Q

How can genetics change the likelihood of getting cancer from a procarcinogen?

A

Balance between metabolic activation and detoxification is largely determined by enzyme polymorphisms of the liver

42
Q

What is the mechanism of DNA interaction for most indirect-acting initiators?

A

They are electrophilic reactants which form covalent adducts with DNA bases -> will cause problems especially if in key DNA regions when promoters come in.

43
Q

Give two general examples of promoters.

A
  1. Exogenous - i.e. viral infections

2. Endogenous - i.e. hormone-induced

44
Q

What are the most common types of cancer caused by UV radiation?

A

Basal cell carcinoma, squamous cell carcinoma, melanoma

45
Q

What are the most common types of cancer caused by ionizing radiation? In children?

A

Leukemia overall, then breast and lung

In children: Thyroid carcinoma

46
Q

What HPV strains mediate its high risk of squamous cell carcinoma of uterine cervix? By what proteins / what is their function?

A

16, 18, 31, 33 (think of the two 16 and 18 year old love birds, getting married +15 years down the line)

Proteins:
E6: Inhibits p53 - think of the E fork into the 6 shrimp, which is next to the nutcracker which is p53 guarding the transition from G1-S phase.

E7: Inhibits Rb - think of the ‘7’ straw coming out of the root beer (RB)

-> causes uncontrolled cell growth and eventual malignant transformation

47
Q

If co-occurring with hyperplasia, what state can lead to increased risk of cancers?

A

Coexistent chronic inflammation -> DNA damage by reactive oxygen species

48
Q

What does endometrial hyperplasia predispose to? What can cause this?

A

Unopposed estrogen stimulation

-> endometrial adenocarcinoma

49
Q

What does ulcerative colitis predispose too?

A

Adenocarcinoma of colon -> recurrent mucosal regeneration

50
Q

What does chronic gastritis predipose to? Hepatic cirrhosis?

A

Gastric adenocarcinoma -> long-standing glandular epithelial proliferation

Hepatic cirrhosis -> hepatocellular carcinoma, due to regenerative hepatic nodules