Modern Biology Flashcards
biotechnology
use of biological agents for technological advancement.
genome
an entire set of DNA molecules in the nucleus is called
lysis buffer
a solution which is mostly a detergent and splits/breaks down cells
proteases
break down proteins
ribonucleases
break down RNA
Gel electrophoresis
technique used to separate molecules on the basis of size
nucleic acid in a gel matrix can be
observed using various fluorescent or colored dye
polymerase chain reaction (PCR)
technique used to amplify specific regions of DNA for further analysis
PCR can be used for many purposes in laboratories such as
cloning of gene fragments to analyze genetic diseases, identification of contaminant foreign DNA in a sample, and the amplification of DNA for sequencing.
PCR can help with
determination of paternity and detection of genetic diseases
reverse transcriptase PCR
RT-PCR
It amplifies DNA fragments through an RNA template
reverse transcription
first step is to recreate the original DNA template strand by applying DNA nucleotides to the mRNA.
short DNA fragments called
probes are designed and labeled with radioactive or fluorescent dyes to aid detection
the fragments in the gel are then transferred onto a nylon membrane in a procedure called
blotting
when DNA is transferred to a nylon membrane, it is called
Southern blotting.
When RNA is transferred to a nylon membrane it is called
northern blotting
Only Southern blotting is capitalized because
it is named after the scientist who pioneered the technique, Edwin Southern.
fred Sanger developed the
sequencing method used for the human genome sequencing project, which is widely used today.
Fred sangers method is known as
the dideoxy chain termination method
the sequencing method is based on the use of
chain terminators, the dideoxynucleotides (ddNTPs)
ddNTPSs differ from deoxynucelotides by the
lack of free 3’ OH group on the five-carbon sugar.
if a ddNTP is added to a growing a DNA strand, the chain is
not extended any further because the free 3’ OH group needed to add another nucleotide is not available.
By using a predetermined ratio of deoxyribonucelotides to dideoxynucelotides, it is possible to
generate DNA fragments of different sizes.
The first step is, The DNA sample to be sequenced is
denatured of separated into two strands by heating it to high temperatures.
The DNA is divided into four tubes in which a
primer, DNA polymerase, and all four nucleotides (A,T,G, and C) are added.
in addition to each of the four tubes,
limited quantities of one of the four dideoxynucleotides are added to each tube respectively.
the gel for gel electrophoresis is made of a chemical called
agarose
agarose power is added
to a buffer and heated. after cooling, the gel solution is poured, and once it solidifies, an electric Current is applied
the electric current is applied for sufficient time to
let the DNA seperate according to size;
the smallest fragments will be
farthest from the well (where the DNA was loaded)
the heavier molecular weight fragments will be
closest to the well.
the re-creation of a whole organism is referred to as
reproductive cloning
researchers learned how to reproduce desired regions or fragments of the genome, a process that is referred to as
molecular cloning
cloning small fragments of the genome allows for
the manipulation and study of specific genes, or noncoding regions in isolation.
a plasmid (also called a vector) is a
small circular DNA molecule that replicates independently of the chromosomal DNA of microorganisms such as E. coli
in cloning, the plasmid molecules can be used to
provide a “folder” in which to insert a desired DNA fragment
plasmids are usually
introduced into a bacterial host for proliferation.