Mod 6 Genetic Change Flashcards

(67 cards)

1
Q

What are the three types of mutagens?

A
  • Biological - living organisms (includes viruses)
  • Physical - highly-ionising radiatation
  • Chemical - chemical agents
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2
Q

What are examples of mutagens?

A
  • Biological - virus, HPV, bacteria, fungi
  • Physical - Gamma rays, X-rays
  • Chemical - tar (tobacco), asbestos, benzene
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3
Q

What is a mutation?

A
  • The changing of the structure of a gene, resulting in a permanent variant form
  • Most are harmful
  • Some are ‘silent’
  • Occassionally beneficial
  • If a mutation is beneficial and able to be inherited, it will increase in frequency in the population
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4
Q

What are two types of mutations?

A
  • Germ-line: Gametes, affects whole organism (if inherited), can be passed on to offspring
  • Somatic: Body cells, affect one part of the organism, cannot be passed on to offspring
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5
Q

How are germ-line mutations passed on to offspring?

A
  • Gamete contains mutated gene
  • Forms a diploid zygote
  • As the zygote’s cells replicate, every cell in the body will contain the mutation
  • If the zygote is heterozygous, 50% of it’s gametes will contain the mutation
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6
Q

What are the 4 types of point mutations?

A
  • Frameshift - every amino acid that follows will be altered, caused by insertion/deletion
  • Silent - codes for same amino acid, caused by substitution
  • Missense - codes for different amino acid, caused by substitution
  • Nonsense - codes for stop codon, caused by substitution
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7
Q

What are the impacts of each type of point mutation?

A
  • Frameshift - most harmful, every amino acid after insertion/deletion changes
  • Silent - least harmful, doesn’t impact polypeptide chain
  • Missense - likely causes less functional/incorrectly folded protein
  • Nonsense - results in short polypeptide, likely a non-functional protein
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8
Q

What are the types of chromosomal mutations?

A
  • Deletion - part of a chromosome is lost
  • Inversion - piece of chromosome detaches, rotates and rejoins
  • Duplication - an extra piece of chromosome is added
  • Translocation - a piece of chromosome 1 breaks off and joins chromosome 2 and vice versa
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9
Q

What is aneuploidy?

A
  • one or more extra copies of an entire chromosome or an entire missing chromosome
  • abnormal number of chromosomes
  • caused by non-disjunction, doesn’t pull apart homologous pairs
  • failure of spindle fibres
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10
Q

What is polyploidy?

A
  • organism contains more than 2 complete sets of homologous chromosomes
  • e.g. 3n fetus - 69 chromosomes
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11
Q

What is the significance of introns in chromosomal mutations?

A

if a section of genes switches with another, the introns may ‘switch on/off’ the wrong gene

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12
Q

Are mutations in exons or introns worse?

A

Exons - they code for an amino acid

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13
Q

How do mutations effect the gene pool of populations?

A
  • only source of new alleles
  • most are not beneficial and are removed
  • neutral/beneficial mutations are usually kept and increase genetic variation
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14
Q

How does gene flow effect the gene pool of populations?

A
  • emigration/immigration causes increase genetic variation
  • more noticeable in small populations
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15
Q

How does genetic drift effect the gene pool of populations?

A
  • decreases genetic diversity
  • more noticeable in small populations
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16
Q

What is gene flow?

A

exchange of genetic information between populations via immigration (incoming) and emigration (exiting)

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17
Q

What is genetic drift?

A
  • population frequencies change slowly over time due to random chance
  • it is not natural selection as there is no continuous selection pressure
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18
Q

How does sexual selection effect the gene pool of populations?

A
  • non-random mating decreases genetic variation
  • certain individuals are more attractive & breed more - their alleles are more frequent
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19
Q

How does selection pressure effect the gene pool of populations?

A
  • decreases genetic variation
  • certain phenotypes/alleles have a higher chance of survival & breeding - increased frequency
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20
Q

What are some ancient biotechnologies and their pros and cons?

A

Aboriginal eel traps
* made of reeds and sticks
* allowed trade system with other groups
* sustains population when food is scarce
* disrupts natural waterways
* reduces eel G.D. and population numbers

Domestication & Farming
* beginning of selective breedings
* feeds growing populations
* higher quantity & quality
* faster growing/breedings
* Decreased G.D. leads to susceptability to disease and pests
* New hybrids temporarily increase G.D.
* May lead to monoculture & loss of biodiversity

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21
Q

What are some modern biotechnologies and their pros and cons?

A

GMO Cavendish Bananas
* Cavendish bananas are at risk of fungal disease - use gene-editing to create fungus-resistant bananas
* protects food availability
* reduce crop loss due to fungus
* maintains employment & income of current growers
* Ethical issue of choice & labelling of GM foodstuffs - people have a right to know
* different countires have different GMO rules/laws
* increased G.D. as bananas are already clones
* Cavendish are sterile - no risk of horziontal gene-transfer into wild

Medicine & Antibiotics
* many antibiotics are produced by fungus
* increased health, lower mortality rates
* safe & predicatable treatment
* issue of patents & equity - earning back costs to make medicines
* potential for biological warfare & bio terrorism e.g. anthrax
* decreases bacterium biodiversity
* natural selection produces abx resistant bacteria - decreases effectiveness of abx
* decreases human biodiversity - those who respond to abx survive while those who don’t die from sickness

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22
Q

What are some possible future biotechnologies in agriculture?

A
  • genetic engineered plants with gene for nitrogen-fixing = less reilance on fertilisers
  • engineered plants for drought tolerance
  • controlling sex of animals e.g. only male fish, female only chickens
  • currently, male chicks are unethically culled and unprofitable (waste of money to grow them)
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23
Q

What are some possible future industrial/environmental biotechnologies?

A
  • potential to solve waste disposal
  • develop new materials to replace plastics e.g. spider silk or shrilk (biodegradable bioplastic from shrimp shells and silk protein)
  • eliminating pests/invasive species by incorporating ‘daughterless gene’ - can only produce male offspring
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24
Q

What are some possible future biotechnologies in medical applications?

A
  • elimination of infectious diseases e.g. GM mosquitos using CRISPR-Cas9 to eliminate malaria - daughterless gene, male mosquitos do not bite
  • delivering effective and personalised medicines
  • CRISPR-Cas9 for hereditary blindness
  • Genetic modification in humans for resistance to infectious diseases, e.g. HIV
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25
What are some current genetic technologies that induce genetic change?
* Reproductive technologies - Artificial Pollination & Insemination, IVF * Cloning techniques - Whole-organism cloning (SCNT, propagation, micropropagation, apomixis), Therapeutic cloning, Gene cloning * Recombinant DNA techniques - Transgenesis, gene sequencing, gene therapy (using CRISPR-Cas9), CRISPR
26
What are some uses of AI and AP?
* AI is used to create Belgian Blue cows - bigger muscles, more meat, leaner & healthier meat, less cows = less expensive * AP is used to grow vanilla as natural pollination is very slow - there is only one bee known to pollinate naturally * both are commonly used in agriculture, especially industrial agriculture
27
What are some advantages of AI and AP?
* faster growing/shorter breeding time * higher nutrient value, yields, and growth rates * higher incomes * supports economy & trade of desirable crops * increased uniformity in desired traits * Global benefits from storage & transport of semen rather than transporting sire/animals * reduces spread of STDs in animals
28
What are some negatives of AI and AP?
* selected traits may make organisms more susceptible to pests/disease * while one trait is selected for over generations, others may be inadvertently lost, e.g. pest/disease resistance * often leads to monoculture/loss of GD and loss of species * AP can be inefficient/time consuming * fetilisation is not guaranteed * AP has lower quality of fruit compared to naturally pollinated * AI requires well-trained operators & equipment * improper cleaning/unhygienic conditions may lead to infection & lower fertility in AI * Larger labour costs & increased infrastructure facilites
29
What are some uses of IVF?
* Used for fertility treatment in humans * Pre-implantation genetic diagnosis of embryos scans for genetic diseases * able to freeze embryos
30
What are some advantages of IVF?
* ensures continuity of species * same-sex couples and single females can become parents * fatal/dangerous genetic diseases can be identified before birth - prevents stillbirths, miscarriages, and neonatal death * able to freeze embryos
31
What are some negatives of IVF?
* can be very expensive * can be very time-consuming * low success rate * requires specialist training & equipment * not accessible to everyone * may decrease GD as certain genes (e.g. for disease) are 'edited' out
32
What are some uses of whole-organism cloning in plants?
* many ancient grapevines are propagated to maintain flavour of ancient wines * propagation & micropropagation are often used in agriculture - monoculture farming
33
What are some negatives of whole-organism cloning in plants?
* perpetuates monocultures - lack of GD * can be time consuming - requires training & industrial production * micropropagation requires sterile growth medium & aseptic techniques
34
What are some advantages of whole-organism cloning in plants?
* conserves specific qualities of organisms * plant propagation and micropropagation is faster than growing from a seed * inexpensive * widespread use = effective * maintains quality & uniformity of plants
35
What are some uses of whole-organism cloning in animals?
* can be used in conservation * Some animals have been cloned to have gene mutations to help scientists study diseases that develop in animals * Can be used in drug research * can be used to produce human medication * can be used to create animals with desirable traits for agriculture * None of these are widespread due to very low success rates
36
What are some advantages of whole-organism cloning in animals?
* conserves desirable traits * can help advance medicine and research by cloning specific organs * Can help scientists study diseases that develop in animals * Can produce medicine needed to treat humans
37
What are some negatives of whole-organism cloning in animals?
* very low success rate * very expensive * often has unforeseen health risks to animal * decreases GD * surrogate mothers suffer health risks
38
What are some uses of gene cloning?
* Can be in vivo (using bacteria to copy DNA via binary fission) or ex vivo (PCR machine/thermal cycling) * transgenic bacteria are used to produce human insulin for medical use
39
What are some advantages of gene cloning?
* products can improve health & wellbeing in medical applications * produces large amounts of gene copies in a short amount of time * cheap
40
What are some negatives of gene cloning?
* potential for accidental mutations - may alter function of gene/protein * GMOs have risk of horizontal gene transfer * Cloned genes related to pathogens or toxins can potentially be misused in bioterrorism * can be legal and commercial restrictions around cloned genes, creating issues over who owns genetic material
41
What are some uses of recombinant DNA technology?
* Can be used to extract gene product * Transgenesic bacteria are used to produce human insulin for medical use * can transfer genes between species * CRISPR can be used to edit genes * Gene therapy can be used in medicine to reprogram dysfunctional cells/tissue * transgenesis can be used to create pest-resistant plants * Gene sequencing can be used to personalise medical treatment
42
What are some negatives of recombinant DNA technology?
* Plasmids contain antibiotic resistance genes – when used to create transgenic organism, resistance has potential to be transferred also = exacerbating problems with abx resistance * gene therapy has very low success rate & is very expensive * GM crops may outcompete wild crops * possible cross contamination and migration of recombinant DNA between organisms
43
What are some advantages of recombinant DNA technology?
* Fast & cheap * products can improve health & wellbeing in medical applications * can transfer genes between species * CRISPR - fast and cheap * Gene therapy using CRISPR-Cas9 can treat diseases such as CF and sickle-cell anaemia * pest-resistant plants reduce cost and use of pesticides * Gene sequencing can be used to personalise medical treatment
44
What is propagation?
using 'cuttings' of plants to grow clones
45
What is micropropagation?
Small portions of plant tissue are grown in a solid growth medium or nutrient agar broth until ready to be transplanted
46
What is apomixis?
The use of transgenesis to get plants to produce clonal seeds without being fertilised
47
What are the similarities in the process of AI and AP?
* involve transfer of male gametes to female gametes * requires a female and a male able to mate
48
What are the similarities in the outcome of AI and AP?
* produce offspring with selected desired traits * produces offspring that has genes from male and female gametes used
49
What are the differences in the outcome of AI and AP?
AI: * produces live animals * offspring produce semen or eggs AP: * produces fruits * offspring produce seeds only
50
What are the differences in the process of AI and AP?
AI: * transfers semen to vagina/uterus * collects semen using artificial vagina AP: * transfers pollen to stigma * collects pollen grains using a brush
51
How effective is whole-organism cloning in plants?
* Widespread use * very effective * cheap - widespread availability * very high success rate
52
How effective is whole-organism cloning in animals?
* Not widely used * very low success rate - 0.1-4% * expensive procedure limits access * high pregnancy loss and mortality * Surrogate mothers suffer increased health risks * Using cloned animals as food remains controversial & is generally not accepted * could be used in conservation efforts? * very low effectiveness
53
How effective is gene cloning?
* Gene cloning is a fast and efficient way to produce many copies of a gene * gene cloning techniques used in gene therapy to treat disease such as CF have not been very successful - expensive and attacked by immune system * GM plants that use gene cloning have proved to produce higher nutrient value, pest resistance, etc. * overall, very effective
54
What is the process of creating a transgenic organism?
1. RE "cuts" gene of interest from the cell of species A 2. The same RE is used to "cut" the plasmid from the cell of species B 3. Ligase joins the "cut" genes together 4. The resultant transgenic plasmid is reinsterted into the cell of species B using an electric pulse
55
What is transgenesis?
A procedure where genetic material is transferrred from one species to another species
56
How are transgenic organisms used in medicine?
* Human insulin production - uses transgenic bacteria with human insulin gene * Transgenic sheep - produce human blood-clotting factors in milk to treat haemophilia * Knock-out mice replace existing genes with artifical DNA & are cross-bred to produce pure-breeding offspring without a specific gene - allows scientists to infer function of lost gene by obersving differences in behaviour or phenotypes * Knock out mice are used in cancer research to study potential cancer drugs/symptoms
57
How are transgenic organisms used in agriculture?
* Transgenic Atlantic salmon - contain transgene that includes Chinook salmon growth hormone and Ocean Pout antifreeze protein → grow faster & larger, more income * Bt cotton - contains transgene from bacteria (Bt) that produces toxin that kills caterpillar pests → don't need pesticide or insecticide * Golden Rice - contain transgene from dandelions/corn and a bacterium that produces high amounts of vitamin A
58
What are the benefits of using genetic technologies in agriculture?
* less cost on pesticides/insecticides - pest resistant plants * higher income for farmers - higher yields, quality, and faster growing * higher nutritional value can be used to treat vitamin deficiencies - Golden Rice
59
What are the benefits of using genetic technologies in medicine?
* can be used to create human proteins & hormones to treat diseases - e.g. insulin for diabetes, blood-clotting factors for haemophilia * gene therapy can possibly treat chronic diseases such as cystic fibrosis (not very successful) * transgenic organisms can produce large amounts of desired protein at a lower cost & faster * transgenic bacteria are less likely to cause adverse reactions & decrease reliance on animals * can be used to prevent contraction of dangerous diseases via vaccines - created by cloning inactive antigens
60
What are the benefits of using genetic technologies in industrial applications?
* Reduce environmental pollution using GM organisms to clean up crude oil or eat plastic * Genetically modifying plants to produce more starch to produce more biofuel ethanol - better for environment & reduces climate change
61
What are the downsides of using genetic technologies in industrial applications?
* potential for escape into the wild, disrupting ecosystems or leading to gene flow into natural populations * Scaling up genetically engineered organisms to industrial level is costly and time-consuming * Genetically modified traits can become unstable over generations or under changing industrial conditions
62
How can using biotechnology in agriculure affect biodiversity?
Domestication/selective breeding of animals & plants (incl. AP and AI) * temporarily increases biodiversity * long term decrease in BD * may lead to monoculture * selectively bred ogranisms may outcompete wild types * lowers global GD in animals as one sire (male) is used to impregnate females over large geographical area * often leads to land clearing & loss of species & BD GMO Cavendish Bananas * banana GD is already so low it would increase GD * Cavendish are sterile so no risk of gene transfer into wild and unintentionally growing GMOs * perpetuates monoculture of predominant species (low BD) Overuse of Abx on farm animals * decreases bacterium BD * increases abx resistant bacteria
63
What are some social and cultural influences on biotechnologies?
AI & IVF * ethical issues over potential for 'designer babies' with increased use of gene-editing * some companies take advantage of people desperate to have children despite very low chance of success Using Gene Cloning to produce Insulin * some religious groups can use bacterial insulin due to beliefs that prevent use of pig/cow products * some companies patent genes of interest - ethical issues over "owning" a human gene * reluctance of some cultures/groups to accept GMOs Golden Rice * some communities resist GMOs due to traditional agriculture practices or skepticism about biotech corporations * debate over "forcing" poor people in developing countries to eat Golden Rice
64
What are some economic influences on biotechnology?
Golden Rice: * Can be cultivated using existing farming methods - cost-effective solution * intellectual property rights & regulations may limit access for small farmers, potentially leading to dependence on biotech firms Transgenesis: * relatively cheap to produce when using bacteria * Some companies have moved to patent genes of interest - limits access * Transgenic Cavendish bananas resistant to fungal diseases maintain employment & income of current growers and reduces crop loss * Different countries have different laws/rules regarding GMO - prevent global use/distribution Whole-Organism Cloning: * very cheap for plants, very expensive for animals Gene Cloning: * Relatively fast & cheap * Needed to produce vaccines & medicines Gene Therapy: * very expensive & requires ongoing treatment - limits access IVF: * can be very expensive * requires specialist equipment & training - expensive * not accessible to everyone Artifical Insemination: * economic benefits for breeders * higher yield - more income * Requires well-trained operators & equipment * larger labour costs & increased infrasturcture facilities * market for bulls is reduced - unneeded males are often killed Artificial Pollination: * greater yield = increased income * supports economy & trade of desirable crops e.g. vanilla * can be inefficient/time consuming & costly * specialist training for staff required * lower quality fruit compared to naturally pollinated
65
What are the four main ways of inserting the desired gene in trangenesis?
* Micro-injection - injecting DNA directly into nucleus of egg cell * Biolistics - mechanically delivering DNA on microscopic particles into target tissues and cells by 'firing' them from a gene 'gun' * Electroporation - increasing the membrane permeability by applying an electrical current * Transduction - DNA is carried into cells by a viral vector which may be injected directly into bloodstream or delivered by aerosol
66
What is CRISPR?
* Clustered Regularly InterSpaced Palindromic Repeats * natural defence mechanism in bacteria against viral infections * when bacteria eliminate a virus, enzymes break down the virus' genetic material into small pieces which form CRISPR RNA * This CRISPR RNA guides molecular machinery to destroy the viral genome from the bacterium genome & allows bacterium to recognise and defend itself against future similar infections * Scientists have used this to edit DNA using guide RNAs and Cas9 enzyme
67
How does CRISPR work?
1. Identifying target gene: Scientists choose a specific gene in the DNA they want to edit 2. Creating guide RNA (gRNA): A small piece of RNA is designed to match and bind to the target gene, acting as a guide for Cas9 enzyme 3. Cutting the DNA: Cas9 enzyme acts as molecular scissors, attaching to the guide RNA and cutting the DNA at the specified location (PAM) 4. Repairing or Editing the DNA: The cell recognises the break in DNA and attempts to repair it - this step is used to disable a faulty gene or insert a correct version 5. Finalising the Edit: Once repair is complete, the edited gene function as intended