Microbiology Immunology Flashcards
Name and describe the three lines of defense
Lines of Defense
- Skin and mucous membranes
-
Innate (natural) immunity
- Functions immediately after microbial infiltration
- Nonspecific targeting of antigens
-
No memory: Does NOT arise from previous infection or vaccination
- Natural killer (NK) cells
- Polymorphonuclear neutrophils (PMNs)
- Macrophages
- Complement system
- Nonspecific enzymes (cytokines, lysozyme, etc)
-
Acquired (adaptive) immunity
- Functions days after microbial infiltration
- Specific targeting of antigens
- Exhibits diversity: Responds to millions of unique antigens
- Memory: improves on multiple exposure to microorganism
- Two types of acquired immunity
- Cell-mediated: T cells
- Antibody-mediated (humoral): B cells, antibodies
Name and describe the two classifications of acquired immunity
Classification of Acquired Immunity
-
Active
- Mediators: Antibodies and T cells
- Occurs after exposure to foreign antigens
- Slow onset (days)
- Lasts a long time (years)
- Ex: Previous microbial infection, Vaccination with live attenuated or killed antigens
-
Passive
- Mediators: Antibodies
- Occurs after exposure to preformed antibodies from another host
- Immediate onset
- Short duration (months)
- Ex: Pregnancy (IgG), Breast feeding (IgA), Vaccination with antibodies
Name and describe what an antigen is and examples/characteristics listed below:
Immunogen
Hapten
Superantigen
Epitope
Adjuvant
Antigens
- Most are proteins, but many are also polysaccharides, lipoproteins, and nucleoproteins
- Immunogens: Molecules that react with antibodies to induce an immune response. All immunogens are antigens, but not all antigens are immunogens
-
Hapten: An antigen that cannot elicit an immune response on its own (Can’t activate Th cells); it must be bound to a carrier protein
- Many drugs are haptens. ie. Penicillin
- Superantigen: Activates a large number of Th cells at one time. (Eg. TSST)
- Epitopes: The specific antibody-binding site on an antigen
-
Adjuvant: A molecule that enhances the immune response to an antigen
- Added to a vaccine to decrease absorption and increase the effectiveness
- Elicits stronger T and B cell response
- Eliminates the need for repeated boosters
Explain the difference between cell-mediated and antibody-mediated immunity
-
Cell-Mediated Immunity
- Host defense:
- Viruses,
- Bacteria (intracellular),
- fungi
- Protozoa
- Mediators:
- T cells
- NK cells
- Macrophages
- Ex: Intracellular infections, Granulomatous infections, Tumor suppression, Organ transplant rejection, Graft vs. host reactions, Type IV (delayed) hypersensitivity
- Host defense:
-
Antibody-mediated (humoral)
- Hoste defense:
- Bacteria
- Some viruses
- Helminths
- Mediators:
- B cells
- Antibodies
- Examples: Bacterial toxin-induced infections, Autoimmune reactions, Type I, II, III hypersensitivity
- Hoste defense:
Explain Freund’s adjuvant
Freund’s adjuvant:
- Inactivated M. tuberculosis suspended in lanolin and mineral oil
- Functions as an immunopotentiator (booster)
- Used for research as it is toxic in humans
State the cellular components of the immune system
T cells
B cells
Natural killer (NK) cells
Monocytes and Macrophages
Dendritic Cells
Polymorphonuclear Neutrophils (PMNs)
Eosinophils
Basophils and Mast Cells
Explain a T-cell and its differentiation pathway
T Cells
- Differentiate in the thymus
- Long lifespan, ranging from months to years
- Have a CD3 associated T-cell receptor (TCR) , which recognizes a unique antigen only in conjunction with MHC proteins
T-cell differentiation:
- Made in bone marrow
- Thymus cortex = positive selection
- CD4+ CD8+ T cell
- Thymus Medula = Negative selection
- CD8+ T cell -> Cytotoxic T cell (lymph node)
- CD4+ T cell -> Helper T cell (lymph node)
- Lymph node
-
CD8 T cell -> Cytotoxic T cell (lymph node)
- Kills virus-infected, neoplastic, and donor graft cells
- Endogenous MHC I
- Kills virus-infected, neoplastic, and donor graft cells
-
CD4 T cell -> Helper T cell (lymph node)
-
Th1 cell (cell-mediated response)
- Makes IL-2, IFN-GAMMA, AND ACTIVATES MACROPHAGES AND CD8+ T cells
- Inhibited by IL-10
- Makes IL-2, IFN-GAMMA, AND ACTIVATES MACROPHAGES AND CD8+ T cells
-
Th2 cells (humoral response)
- Makes IL-4, IL-5, IL-10, and help B cells make antibody (IgE > IgG)
- Inhibited by INF-gamma
- Makes IL-4, IL-5, IL-10, and help B cells make antibody (IgE > IgG)
- Exogenous MHC II
-
Th1 cell (cell-mediated response)
-
CD8 T cell -> Cytotoxic T cell (lymph node)

Explain the following about the identified T Cell:
CD4 lymphocytes, helper T cells (Th Cells)
Th1 cells
Th 2 cells
- Function
- Characterization
CD4 lymphocytes, helper T cells (Th Cells)
- Function: none listed
- Characterization: Responds to antigen associated with Class II MHC proteins
Th1 cells
-
Function:
- Signal CD8 cells to differentiate into cytotoxic T cells
- Signal macrophages in Type IV (delayed) hypersensitivity reactions
-
Characterization:
- Secrete:
- IL-2 (CD8+ cells)
- INF-gamma (macrophages)
- Secrete:
Th2 cells
-
Function:
- Signal B cells to differentiate into plasma cells, producing antibodies
-
Characterization:
- Secrete:
- IL-4
- IL-5
- Secrete:
Explain the following about the identified T Cell:
CD4 lymphocytes, cytotoxic T cells (Tc cells)
- Function
- Characterization
CD4 lymphocytes, cytotoxic T cells (Tc cells)
-
Function:
- Kill virus-infected, tumor, and allograft cells
- Two ways:
- Release perforins (disrupt cell membranes)
- Induce apoptosis (programmed cell death)
-
Characterization
- Respond to antigen associated with Class I MHC proteins
Explain the following about the identified T Cell:
Memory T Cells
- Function
- Characterization
Memory T Cells
- Function:
- Activated in response to re-exposure to antigen
- Characterization
- Exist for years after initial exposure
Explain clonal selection
The process by which an antigen binds to a specific TCR (T cell) or Ig (B cell), activating that immune cell to clonally expand into cells of the same specificity is called clonal selection
Explain a B cell and state/describe its major types
Types (Plasma Cells, Mature B cells, Memory B cells)
- Function
- Characteristics
B cells
- Differentiate in the bone marrow
- Short life span, ranging from days to weeks
Major Types of B Cells:
Plasma Cells
-
Function:
- Synthesize immunoglobulins (antibodies)
-
Characteristics:
- Only monomeric IgM and IgD are expressed on their surface as antigen receptors
Mature B Cells
-
Function:
- Antigen presentation
-
Characteristics:
- Express class II MHC proteins
- APC that presents to CD4 Th cells
- Express class II MHC proteins
Memory B Cells
-
Function:
- Activated in response to re-exposure to antigen
-
Characteristics:
- Exist for years after initial exposure
Recall:
- Class I MHC surface proteins: on all nucleated cells. Recognition of self vs. non-self.
- Class II MHC surface proteins: ONLY on ANTIGEN PRESENTING CELLS (APCs) Present antigen to Th cells
Explain Natural Killer (NK) Cells
Natural Killer (NK) Cells
- Lack a CD3-associated TCR and surface IgM or IgD
- IgG antibodies enhance NK cell effectiveness via antibody-dependent cellular cytotoxicity (ADCC)
- Are NOT specific to any antigen and do not need to recognize MHC proteins
- No memory : Do not require previous exposure to antigen
- Activated by IL-12 and INF-Gamma
- Functions:
- Kill Virus-infected cells and tumor cells (induce apoptosis via perforins and granzymes)
Explain Monocytes and Macrophages
Monocytes and Macrophages
- Agranular leukocytes
- Derived from bone marrow histiocytes
- Exist in plasma (monocytes) and in tissues (macrophages)
- Activated by bacterial LPS, peptidoglycan, and DNA, as well as TH1 cell-mediated INF-Gamma
- Functions:
- Phagocytosis: Via Fc and C3b receptors
- Antigen presentation: Express Class II MHC proteins
- Cytokine Production: IL-1, IL-6, IL-8, INF and TNF
Monocytes and macrophages are major components of the reticuloendothelial system, which includes all phagocytic cells except for granulocytes (PMNs)
What are other phagocytes besides monocytes and macrophages?
Other Phagocytes:
- Histocytes: CT
- Microglia: CNS
- Dust cells: Lungs
- Kupffer cells: Liver
Explain Dendritic cells
What are Langerhans cells?
Dendritic cells
- Agranular leukocytes
- Located primarily in the skin and mucous membranes
- Functions:
- Antigen presentation express Class II MHC proteins
Langerhans cells: Are the major dendritic cells of the gingival epithelium
Explain Polymorphonuclear Neutrophils (PMNs)
What are the major contents of PMN cytoplasmic granules?
Polymorphonuclear Neutrophils (PMNs)
- Granular leukocytes.
- Cytoplasmic granules (lysosomes) contain several bacteriocidal enzymes
- Functions:
- Phagocytosis
- Cytokine production
Major contents of PMN Cytoplasmic Granules
Granule Type/ Enzymes
Primary (azurophilic)
- Hydrolase
- Myeloperoxidase
- Neuraminidase
Secondary
- Collagenase
- Lysozyme
- Lactoferrin
Explain Eosinophils
Eosinophils
- Granular leukocytes
- Blind antigen-bound IgG or IgE, subsequently releasing cytoplasmic granules
- Do not present antigen to T cells
- Functions:
- Defense against parasitic infections (especially nematodes)
- Mediate hypersensitivity diseases: Release histaminase, leukotrienes, and peroxidase
- Phagocytosis
Explain Basophils and Mast Cells
Basophils and Mast Cells
- Granular leukocytes
- Exist in plasma (basophils) and in tissues (mast cells)
- Bind antigen-bound IgE, subsequently releasing cytoplasmic granules (histamine, heparin, peroxidase, and hydrolase) and inflammatory cytokines.
- Functions:
- Mediate immediate hypersensitivity reactions such as anaphylaxis
Explain what Opsonization is
What are the two major opsonins?
Opsonization
- Enhances phagocytosis of encapsulated microorganisms
- Antibody (IgG) or complement protein (C3b) coat the outer surface of microorganisms, allowing phagocytes to bind and engulf them more efficiently
THE TWO MAJOR OPSONINS ARE IgG AND C3b
What are Antigen presenting cells and what do they express?
Antigen-presenting cells (APCs) express class II MHC proteins and present antigen to CD4 T cells. The predominant APCs of the immune system are monocytes and macrophages, dendritic cells (langerhans cells) and B cells
What are Chemokines (give examples)
Chemokines (IL-8, C5a, LT-B, FMLP) are chemotactic cytokines for PMNs and macrophages
What is phagocytosis and what are the stages
Stage
event
characteristic
Phagocytosis
- The process by which microorganisms, cell debris, dead or damaged host cells, and other insoluble particles are taken up and broken down by phagocytes
Stages of Phagocytosis
Adhesion
- Plasma phagocytes (PMNs, monocytes) bind to vascular endothelium
- Mediated by selectin and cellular adhesion molecules (CAMs)
Migration
- Phagocytes migrate toward the microorganisms
- Diapedesis is the movement of the phagocyte through the vascular endothelium
- Mediated by chemokines (IL-8, C5a, LT-B4, FMLP)
Ingestion
- The phagocyte cell membrane forms pseudopods, which surround and engulf the microorganisms
- Phagosome formation occurs when the internalized endosome fuses with lysosomes
- Mediated by opsonization (C3B, IgG)
Lysosomal degranulation
- The lysosome empties its hydrolytic enzymes into the phagosome, killing the microorganism
- Mediated by lysosomal enzymes
State the lysosomal contents and what makes them up
Lysosomal Contents
- Superoxide radicals (O2-)
-
Superoxide dismutase
- Produces hydrogen peroxide (H2O2)
-
Myeloperoxidase
- Produces hypochlorite ion, which damages cell walls
- Lactoferrin
- Chelates iron from bacteria
- Lysozyme
- Degrades bacterial cell wall peptidoglycan
- Proteases
- Nucleases
- Lipases
What are Lysosomes
Lysosomes
membrane-bound vesicles that contain hydrolytic enzymes necessary for intracellular digestion
What are catalase and other peroxidases
Catalase and other peroxidases (enzymes that break down H2O2) are located in membrane-bound organelles called peroxisomes (microbodies).
Bacteria that contain catalase (staphylococci) are able to resist* *cidal* *effects of H2O2
What are immunoglobulins and what are the types
Type
- Location of action
- Function
- Characteristics
Immunoglobulins (antibodies)
- Y-shaped glycoproteins secreted by plasma cells
- Contain two identical light polypeptide chains and two identical heavy polypeptide chains linked by disulfide bonds
IgA
- Location of action
- Blood plasma (monomer)
- Exocrine secretion (dimer)
- Function: prevents microbial attachment to mucous membranes
- 2nd most abundant antibody
IgD
- Location of action:
- B cells
- Function: Uncertain
- Least abundant antibody
IgE
- Location of action:
- Mast cells
- Basophils
- Eosinophils
- Function: Mediates type I hypersensitivity rxn. (anaphylaxis)
- Main host defense against parasites (especially helminths)
IgM
- Location of Action
- B cells (monomer)
- Plasma (pentamer
- Function: Main antimicrobial defense of primary response , Activates complement, opsonizes B cell
- Largest antibody, Most potent activator of complement, Has highest avidity of all antibodies
IgG
- Location of Action: Plasma
- Function: Maintain antimicrobial defense of secondary response , Opsonized bacteria, Activates complement, Neutralizes bacterial toxins and viruses
- Most abundant antibody, Crosses the placenta, Has four subclasses
Explain the Immunoglubulin structure
- The constant regions of the two heavy chains form the Fc site, which binds to APCs or C3b. They define the immunoglobulin class (isotype)
- The two variable regions of the heavy and light chains form the Fab sites, which are specific for binding antigen and determine the idiotype
- Can be bound to plasma membrane of B cells, or free in extracellular fluid
- Functions:
- Neutralize bacterial toxins and viruses
- Opsonization (enhances phagocytosis)
- Activates complement via the classical pathway
- Inhibit microbial attachment to mucosal surfaces
Explain the specialness of IgA and IgM
IgA and IgM are the only antibodies that can exist as polymers, as a dimer, and a pentamer, respectively. Only the polymeric forms contain a J chain, which initiates the polymerization process
Explain the difference between secretory IgA (sIgA) and serum IgA
Secretory IgA (sIgA) differs from serum IgA in that it is more resistant to proteolytic degradation. It always exists as a dimer
What are the only two antibodies that can activate complement?
IgM and IgG are the only two antibodies that can activate complement
What is complement and what are the pathways of complement activation
Complement:
- Consists of about 20 plasma proteins
- Mostly synthesized in the liver
- Augment the humoral immune system (B cell) and inflammation
- All modes of activation lead to the production of C3
Pathways of Complement Activation
Pathway/Characteristics
Classic:
- Primarily activated by antigen-antibody complexes with IgG (1,2,3) or IgM
Alternate:
- Primarily activated by bacterial LPS (endotoxin)
Lectin
- Primarily activated by microorganisms containing cell-surface mannan (a polymer of mannose)

State the Major functions of complement and its mediators
Complement
Viral neutralization
- Mediator: C1, C2, C3, C4
Opsonization
- C3b
Chemotaxis
- C5a
Anaphylaxis
- C3a, C5a (most potent)
Cell lysis (cytolysis)
- Membrane attack complex (MAC) disrupts cell membrane permeability (composed of C5b and C6-9)

Explain the types of Grafts
Types of Grafts
- Autograft: Transplantation of tissue from one site to another within the same individual
- Isograft: Transplant of tissue between two genetically identical individuals in the same species
- Allograft: Transplant of tissue between two genetically different individuals in the same species
- Xenograft: Transplant of tissue between two different species
Explain Graft Rejection Process
Graft Rejection
- T-cell-mediated (mostly CD8 Tc cells) immune response against donor alloantigens
- The severity and rapidity of graft rejection is determined by the degree of differences between donor and recipient class I and II MHC proteins
- If a second graft from the same donor is given to a sensitized recipient, an accelerated rejection response occurs due to the presence of presensitized Tc cells
- Allografts are the most common grafts used for organ transplantation, blood transfusions, and other tissue grafts
- Graft rejection can occur at different time intervals
State and explain the three types of Graft Rejections
- time after transplant
- common reason for rejection
Types of Graft Rejection
-
Hyperacute
- Minutes after transplant
- Preformed antibody-mediated immune response to graft antigens
- Minutes after transplant
-
Acute
- Weeks after transplant
- T=cell=mediated immune response to foreign class I and II MHC proteins
- Weeks after transplant
-
Chronic
- Months to years
- Antibody-mediated necrosis of graft vasculature
- Months to years
NOTE: The most common type of hyperacute rejection are ABO blood mismatches
What are Graft-Versus-Host (GVH) Reaction
- Immunocompetent T cells from the graft recognize the recipient’s cells as foreign, eliciting their destruction
- Host cells are targeted because the recipient generally undergoes radiation therapy, inducing severe immunocompromise
- Occurs most commonly after bone marrow transplants and can be fatal
What is a Hypersensitivity?
Name and describe each type
Hypersensitivity
- Hypersensitivity reactions elicit exaggerated immune responses, which are damaging and destructive to the host
Remember ACID
Type I : immediate (anaphylactic)
- Mediator: IgE
- RxN: Antigen-bound IgE activates the release histamine and other mediators from mast cells and basophils
- Ex: Atopic allergy, Angioedema, Anaphylaxis
Type II: Cytotoxic (Binds with Ab)
- Mediators: IgM and IgG
- RxN: IgM or IgG bind to host cell surface antigens, activating complement and producing MAC-mediated cell destruction
- (antigen on cell membrane -> antibody + complement = cell death)
- Ex: Hemolytic anemia
Type III: Immune-complex (Binds soluble Ag)
- Mediator: Antigen-antibody complexes
- RxN: Antigen-antibody complexes (IgG, IgM, and IgA) are deposited in various tissues, activating complement and eliciting PMN/macrophage-mediated tissue destruction
- (antigen+antibody complex in blood -> deposited on vessel walls, complement activated -> cell death)
- Ex: Arthritis reaction, Glomerulonephritis, Serum sickness
Type IV: Delayed (cell-mediated)
- Mediator: T cell
- RxN: Macrophage present antigen (MHC Class II), activating T cells and producing lymphokine-mediated tissue destruction
- (macrophage produces IL-1, IL-12 -> Th and Helper T cell produces INF-Gamma -> macrophage)
- Starts hours - days after contact with antigen
- Ex: Contact dermatitis, Tuberculin (PPD) tests, Tuberculosis, Sarcoidosis, Leprosy
What are Atopic allergies
Common type I hypersensitivity reactions that have a strong genetic predisposition for excessive IgE production. Clinical manifestations include asthma, edema, and erythema (“wheal and fire”) and urticaria (hives).
Common allergens include pollen, animal danders, food (shellfish and peanuts) drugs (penicillin), bee venom, and latex
What is Angioedema
Angioedema = a more generalized version of type I hypersensitivity.
It involves larger areas and deeper tissues beneath the skin and underlying tissues, causing a more diffuse swelling. May involve the hands, feet, lips, eyelids, genital, oral mucosa, and airway
Rapid(immediate) onset
What is anaphylaxis?
Anaphylaxis
The most severe form of type I hypersensitivity, leading to bronchoconstriction and hypotension (shock); can be life-threatening without treatment.
Its treatment is epinephrine IV. Once vital signs are stabilized, antihistamines or corticosteroids can be administered
Name the 5 common antigen-antibody laboratory tests
- Function
- Common use
Common Antigen-Antibody Laboratory Tests
Agglutination
- Antibody cross-links with a particulate antigen, creating visible clumping is positive
- Common use: ABO blood typing
Precipitation
- Antibody cross-links with a soluble antigen, creating visible precipitates if positive
- Common use: Detection of serum antigen or antibody
Radioimmunoassay (RIA)
- Radio-labeled antibodies cross-link with unlabeled (unknown)antigen, creating measurable radioactive complexes is positive
- Common use: Detection of serum antigen or hapten
Enzyme-linked immunosorbent assay (ELISA)
- Enzyme-labeled antibody binding to serum antibody-antigen complexes. A substrate is then added, activating the enzyme and eliciting a color reaction (determined by spectrophotometry) is positive
- Common use: Detection of antigen or antibody in patient specimens
Immunofluorescence:
- Fluorescent-labeled antibodies bind to unlabeled (unknown) antigen, creating visible fluorescence in UV light if positive
- Common use: Detection of antigen in histologic sections or tissue specimens
What is the universal donor for blood?
What is the universal recipient of blood?
Universal donor: Type O blood
(no A or B antigens)
Universal Recipient: Type AB blood
(Neither anti-A or anti-B antibody)
What is an autoimmune disease and what are examples
Autoimmune Diseases
- Caused by immune reactions versus self (host tissue)
- Usually involves auto-antibodies
- HLA antigen association
- Mechanism:
- Hypersensitivity reactions
- Disordered immunoregulation
- Increased Th cell function
- Decreased Ts cell function
- Nonspecific B-cell activation
- Examples:
- Graves’ disease
- Hashimoto’s thyroiditis
- Pernicious anemia
- Sjogren’s syndrome
- Systemic lupus erythematosus
- Scleroderma
- Polyarteritis nodosa
- Rheumatoid arthritis
- Reiter’s syndrome
- Ankylosing spondylitis
- Myastheria gravis
- Multiple sclerosis
What is the Thymus gland important for?
Thymus gland
- Important for development of the immune system, beginning prenatally
- Involved in T cell development and differentiation
- Located behind the sternum
- Functions in childhood then gradually atrophies with age
Name the 4 autoimmune diseases affecting oral mucosa
- Lichen planus
- Mucous membrane pemphigoid
- Pemphigus vulgaris
- Erythema multiforme
Explain Lichen planus
- Autoantibody
- Histopathology
- IF
- Clinical signs
Lichen planus
- Autoantibody: Unknown
-
Histopathology:
- Epithelial acanthosis with “sawtooth” rete pegs
- Dense accumulation of T cells in underlying CT and into epithelium
- IF: Fibrinogen in a “shaggy” linear pattern along BM
-
Clinical signs:
- Oral lesion on buccal mucosa, tongue, and gingiva
- Types: Reticular (with Wickham’s striae), erosive, plaque
- Certain medications can cause lichenoid reaction
- Skin lesions appear as clusters of pruritic purplish papules with a white keratotic “cap”
Explain Mucous membrane pemphigoid
- Autoantibody
- Histopathology
- IF
- Clinical signs
Mucous membrane pemphigoid
- Autoantibody: Anti-BP-1 (of hemidesmosomes)
-
Histopathology:
- Separation of epithelial basal cells from BM
-
IF:
- IgG and C3 in linear pattern along BM
-
Clinical signs:
- Erythematous and erosive lesions on gingiva precede other oral areas: buccal mucosa, palate, FOM
- Can extend to other mucosa: nasopharynx, esophagus, vaginal, eye conjunctiva (symblepharon formation) and skin
Explain Pemphigus vulgaris
- Autoantibody
- Histopathology
- IF
- Clinical signs
Pemphigus vulgaris
- Autoantibody: Anti-desmoglein (of desmosomes)
-
Histopathology:
- Suprabasilar acantholysis with Tzanck cells
-
IF:
- IgG antibody in “fishnet” pattern within spinous layer
-
Clinical signs:
- Oral lesions often precede skin lesions
- Erosive lesions on soft palate, buccal mucosa, gingiva, lateral tongue
- High mortality rate
Explain Erythema Multiforme
- Autoantibody
- Histopathology
- IF
- Clinical signs
Erythema Multiforme
- Autoantibody: Immune complexes
-
Histopathology:
- Intraepithelial pooling of eosinophilic amorphous coagulum
- Perivascular infiltration of mononuclear cells with lamina propria
-
IF:
- IgM and C3 in perivascular pattern with lamina propria
-
Clinical signs:
- Causative agents include infections (HSV), medications, GI diseases (Crohn’s, UC)
- Bullous “Target” lesions on skin and oral mucosa (25% prevalence), which may collapse and crust over (stevens-johnson syndrome)
- Severe form is toxic epidermal necrolysis (TEN)