Microbiology Flashcards

1
Q

What are the range of conditions associated with an upper respiratory tract infection?

A

Common cold - coryza
Sore throat - pharyngitis
Sinusitus
Epiglottis

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2
Q

What are the range of conditions associated with an lower respiratory tract infection?

A
Acute bronchitis 
Acute exacerbation of chronic bronchitis 
Penumonia 
Influenza
Fungal infection
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3
Q

What viral diseases acn a throat swab test for?

A
Influenza A
Influenza B 
RSV
Metpneumovirus
Rhinovirus
Coronavirus
Parainfleuza
Adenovirus 
Enterovirus
Parechovirus
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4
Q

What are some symptoms of coryza?

A

It is an acute viral infection of the nasal passages that is often accompanied bu a sore throat
It is sometimes accompanied by a mild fever and is spread by droplets and fomites. Complications can include sinusitus and acute bronchitis

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5
Q

What are symptoms of acute sinusitis?

A

Frontal headache
Retro-orbital pain
Maxillary sinus pain - build up of pus in the maxillary sinus before it can be drained
Tooth ache
Discharge
The lymphatic drainage in this area of the face is drained directly back to the brain
It is usually viral but can sometimes need antibiotics

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6
Q

What are the symptoms of strep throat?

A

Exudate
Pus
Dysphagia
Dysphonia

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7
Q

What are the symptoms of acute tonsilitis?

A

Erythematos - bright red palatine tonsils
Dysphagia
Dysphonia
Recurrent

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8
Q

What can be done to cure recurrent tonsilitis?

A

Tonsillectomy

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9
Q

What is a complication of tonsilitis?

A

Quinsy - tonsillar abscess which can be drained

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10
Q

What is diptheria?

A

A life threatening throat condition where the bacteria produce a toxic chemical that causes massive swelling in the back of the throat, asphyxiating the child/adult

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11
Q

What is acute epiglottis?

A

Life threatening condition that occurs due to obstruction

GOLDEN RULE - call for an anesthetist and give antibiotics - usually penicillin

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12
Q

What are some symptoms of acute bronchitis?

A
Productive cough 
Fever - minority of cases
Normal chest examination 
Normal CXR
May have a transient wheeze 
Not life threatening as the infection does not migrate but will cause thickening of the bronchi due to inflammation
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13
Q

What is the treatment on acute bronchitis?

A

Usually self-limiting and antibiotics are NOT indicated in normal people
Paracetamol and fluids

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14
Q

What are the incubation times of common upper respiratory tract infections?

A
Rhinovirus: 1-5 days 
Group A streptococci: 1-5 days
Influenza and parainfluenza: 1-4 days 
RSV: 7 days
Pertussis: 7-21 days 
Diptheria: 1-10 days 
Epstein-Barr virus: 4-6 week
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15
Q

What are the symptoms of an acute exacerbation of COPD?

A
Chronic sputum production, bronchoconstriction, inflammation of the airways 
Usually preceded by an URTI
Increased sputum production 
Increased sputum purulence 
More wheezy
Breathless
Chest pains
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16
Q

What will be seen on examination of an acute exacerbation of COPD?

A
Respiratory distress
Wheeze
Coarse crackles 
Cyanosed
In advanced disease- ankle oedema
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17
Q

How is an acute exacerbation of COPD managed in primary care?

A

Antibiotics - doxycyline or amoxicillin
Bronchodilator inhalors
Short course of steroids in some cases

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18
Q

When should you refer to secondary care?

A

If there is respiratory failure

They cannot cope at home with their disease

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19
Q

How is an acute exacerbation of COPD managed in secondary care?

A

Same as primary care with the addition of:
Arterial blood gases - to determine whether in type 2 resp failure
CXR to look for other diseases
Oxygen if in resp failure - but controlled if in type 2

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20
Q

What can the appearance of the lung tissue look like during pneumonia?

A

Can be cosolidated and look more red. This is called red hepatisation due to the resemblance to liver tissue rather than lung tissue

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21
Q

Histologically, what will the lung tissue look like?

A

The alveolar spaces are filled with inflammatory cells

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22
Q

What are the symptoms of pneumonia?

A
Malaise
Anorexia 
Sweats
Rigors 
Myalgia - muscle pain
Arthralgia - joint pain 
Headache
Confusion
Cough
Pleurisy
Haemoptysis
Dyspnoea
Preceding URTI
Abdo pain- this is due to the pneumonia sitting on top of the diaphragm irritating it 
Diarrhoea
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23
Q

What are the signs of pneumonia?

A
Fever
Rigors
Herpes labilais - cold sores 
Tachypnoea - high resp rate 
Crackles 
Rub
Cyanosis 
Hypotension
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24
Q

How can penumonia be investiaged/diagnosed?

A
Blood culture 
Serology
Arterial gases 
Full blood count 
Urea
Liver function 
CXR
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25
What is the CURB 65 severity score for community acquired pneumonia
``` C = new onset of confusion U = Urea >7 R = Respiratory rate >30/min B = Blood pressure systolic <90 or diastolic <61 65 = Aged 65 years or older Score 1 point for each above ```
26
What are other severity markers for pneumonia?
Temp <35 or >40 Cyanosis PaO2 <8 kPa WBC <4 or >30 Multi-lobar involvement
27
What is the management of community acquired penumonia?
``` Antibiotics - amoxicillin or doxycycline Oxygen - maintain SaO2 94-98% or 88-92% Fluids Bed rest No smoking ```
28
What are special cases of pneumonia?
Hospital acquired - need extended gram negative cover Aspiration pneumomnia - anaerboic cover Legionella - chest symptoms minimal, GI disturbance common, confusion common
29
Why should you be cautious with the young?
They can compensate well for being unwell - the CURB can be fine but they are septic C: Good cerebral vasculature - all the brain works U: Good kidneys R: Can increase Vt - increase tidal volume rather than resp rate B: Inotropic, chronotropic, vascular responses - BP won't fall They will decompansate VERY quickly
30
How could you overtreat the old?
They could be at a CURB1 before they start: C: Poor cerebral perfusion U: Poor renal pefusion R: Rely on resp rate rather than increasing tidal volume B: Poor inotropic, chronotropic and vascular responses
31
When should you give IV a/b?
When the oral route is not available - NPO Sensitivities - drug resistant organisms Deep seated infections - abscesses, bone, endocarditis, meningitis First dose - rapid increase in plasma conc
32
How can lifestyle affect the chance of contracting an URTI?
``` HIV PWID (people who inject drugs) - staph aureus Alcohol/homelessness - TB, klebsiella Frequently hospitalised - pseudomonas Returning traveller - leginoells, TB Indian sub-continent - TB Easten europre- MDR TB, XDRTB ```
33
What are complications of pneumonia?
Respiratory failure Pleural effusion Empyema Death
34
How can pneumonia be prevented?
Influenza and penumococcal vacines in people: Over 65, with chronic chest or cardiac disease, diabetes, immunocompromised - splenectomy Infleunza virus - health care workers
35
What is empyema?
The collection of pus in a cavity in the body, especially in the pleural cavity
36
What are the upper respiratratory tract defecnces?
Nasopharynx: nasal hairs, ciliated epithelia, IgA Oropharynx: Saliva, Sloughing, Cough
37
What are some common URT colonisers that are gram positive?
Alpha-haemolytic streptococci - strep pneumoniae Beta-haemolytic streptococci - strep pyogenes Staphylococcus aureus
38
What are some common URT colonisers that are gram negative?
Haemophilus influenzae | Moraxela cararrhalis
39
What are some conducting airway defences?
``` Mucociliary escalator Cough AMP's Cellular and humoral immunity Infections occur when there are changes: Trauma/intubation of airway Abnormalities of defence - ciliary escalator and others as occurs in CPD and CF Virulent pathogen/large inocolum ```
40
What are the clinical signs of acute bronchitis?
``` Infection and inflammation of the bronchi Productive cough +/- wheeze +/- fever Normal chest examination and CXR ```
41
What is the microbiology for acute bronchitis?
90% viral Preceded by URT infection Normal chest examination and CXR Antibiotics not usually indicated
42
What are the clinical signs of a acute exacerbation of COPD?
``` Adults Productive cough or acute chest illness Breathlessness Wheezing Increased sputum purulence Often follow viral infection or fall in temp and increase in humidity ```
43
What is the microbiology of an acute exacerbation of COPD?
``` 30% viral alone 50% bacterial Haemophilus influenzae Moraxella catarrhalis Streptococcus pneumoniae Gram-negative ```
44
What are the symptoms of whooping cough?
Acute trachea bronchitis Cold like symptoms for 2 weeks Repeated violent exhalations with severe inspiratory whoop, vomiting common Residual cough for a month or more
45
What is the microbiology of petussis?
Bordetella pertussis Gram negative coccobacillus Exculsively human pathogen Vaccine preventable
46
How is bordetella pertussis diagnosed?
Bacterial culture Pernasal swab (<21 days) Serology Clinical signs and symptoms (low numbers of organisms by onset of paroxysmal cough) Treatment with antibiotics <21 days cough
47
What are the 3 main routes of transmission?
Contact (touch) Airbourne Droplet
48
What are the characteristics of airbourne particles?
Small particles that are less than 5 microns in size Airbourne Limited indications - multi-drug resistant TB, some viruses, TRI undergoing aeresol Require standard infection control precautions and a filtering face piece 3 (FFP3)
49
What are the characteristics of a droplet?
Larger particles, more than 5 microns in size and fall to the floor within 2m Spread via direct contact of droplets with the mucous membranes Droplet, then surface, then contact spread Ideally in a single room, not in a ward
50
How is CF contracted?
It is an inherited disease that leads to abdonrmally viscous mucus, blocking many tubular structures including conducting airways and lungs
51
What are the clinical signs of CF?
Repeated chest infections and chronic colonisation
52
What is the microbiology of CF?
Inefficient clearance and build-up of mucus | Staph aureus, haemophilus influenzae, strep pneumoniae, pseudomonas aeruginosa, burkholderia cepacia and many others
53
What are the lung defences?
Normally sterile No ciliary escalator, alveolar lining fluid which contains surfactant, Ig, complement, FFA, AMP Alveolar macrophages and neutrophils Phagocytosis leads to an inflammatory response
54
What are the signs of community acquired pneumonia?
``` Cough Increased sputum Chest pain Dyspnoea Fever CXR with infiltrates Acquired in the community ```
55
What is the pathology of community acquired pneumonia?
Organism reaches the lungs leads to immune activation and infiltration (systemic response) leads to fluid and cellular build up in alveoli which leads to impaired gas exchange
56
What is the microbiology of community acquired pneumonia?
``` Causative organisms: Streptococcus penumoniae 70% Atypicals/viruses 20% Hemophilus influenzae 5% Staphylococcus aureus 4% Other bacteria 1% ```
57
What are the risk factors to getting community acquired penumonia?
Increasing age Immunocompromised Smoking
58
How is community acquired pneumonia diagnosed?
Sputum culture - purulence | Viral PCR
59
What antibiotics is streptocococcus pneumoniae?
Amoxicillin, doxycycline and co-trimoxazole
60
What is a typical type of community acquired pneumonia?
Streptocococcus pneumoniae
61
What is a atypical type of community acquired pneumonia?
Mycoplasm pneumoniae, legionella pneumonia, chlamydophila pneumonia
62
What are the 4 types of pneumonia?
Typical vs atypical (community acquired) Hospital associated pneumonia Aspiration pneumonia Pneumonia in the immunosupressed (Pneumocystis, TB)
63
What can be seen in the microbiology for legionella pneumonia?
``` Urinary antigen - pos Legioniella PCR - pos Culture - pos Routine culture - neg Viral PCR - neg ```
64
How is legionella pneumonia diagnosed?
Legionalle urinary antigen Detects serogroup 1 only Culture is slow on selective media Paired serology rises in titres
65
What antibiotics are given to treat legionella pneumonia?
Clarythromycin, erythromycin, quinolones (levofloxacin)
66
What are the clinical signs on leginoella pneumonia?
Flu like illness which may progress to a severe pneumonia, with mental confusion, acute renal failure and GI symptoms
67
What is the epidemiology of legionella pneumonia?
No person-to -person spread Transmitted by inhalation of contaminated water droplets Exposure to contaminated aerosolised water and impaired immunity put you at risk for catching legionela pneumonia
68
What is staphylococcus pneumonia?
``` Post infleunza (strep pneumo still more common that staph post influenza Haematogenous spread of staphylococcus aureus (CV infections) ```