Microbiology Flashcards
what are the 5 types of infectious agents?
1, parasites
- fungi
- bacteria
- viruses
- prion proteins
in relation to Staphylococcus aureus, what is the genus name?
Staphylococcus
in relation to Staphylococcus aureus, what is the species name?
aureus
what are prion proteins?
infectious proteins that have no DNA or RNA
what incurable brain infection do prion proteins cause?
Creutzfeld-Jacobs Disease
‘Mad cow diease’
why do surgical instruments used on patients with prion disease have do be destroyed?
prion proteins cannot be reliably removed by sterilisation or disinfection
what is the another name for prion diseases?
transmissible spongiform encephalopathies (TSEs)
What are viruses?
very small, obligate intracellular parasite
contain RNA or DNA, a protein coat +/- a lipid coat
what are the diagnostic methods for viruses?
Serology
PCR
Cell culture
what is serology?
antibody detection in blood
what does PCR detect and replicate millions of times?
DNA or RNA
how is DNA contained within a bacterial cell? (prokaryote)
within one tightly coile, double-stranded chromosome: nucleoid
plus extra circular rings of DNA in cytosol: plasmids
what are the flagellae of a bacterial cell for?
tail-like structure, for movement
what are the pili (fimbriae) of a bacterial cell for?
adhesion
what shape is a coccus bacteria?
round
what shape is a bacillus bacteria?
rod-shaped
what shape is a spirochaetes?
spirals
what does Gram stain actually stain?
bacterial cell wall
what colour does the Gram stain go if the bacteria is Gram positive?
purple
what colour does the Gram stain go if the bacteria is Gram negative?
pink
explain the cell wall of a gram positive bacterium
gram positives have a thick layer of peptidoglycan (cell wall) and then just deep to that have a cytoplasmic membrane made of phosholipids.
explain the cell wall of a gram negative bacterium
gram negatives have a outer cytoplasmic membrane, a middle thin layer peptidoglycan (cell wall) and an inner cytoplasmic membrane
what 2 types of bactteria dont stain well with gram stain?
Mycobacterium Tuberculosis (atypical bacterium which causes TB) Treponema pallidum (a spirochaete that causes sphyilis)
why does Mycobacterium tuberculosis not stain well with Gram stain?
has a waxy coat that doesn’t take up the stain
where are the 4 main places of normal bacterial flora?
upper respiratory tract
lower small intestine and large bowel
vagina
skin
what is a pathogen?
a harmful organism
what is a commensal?
an organism part of the normal flora
what is an opportunistic pathogen?
an organism that will usually only cause infection in an immunocompromised individual
what is a contaminant?
an organism that has got into a culture by accident
what is pathogenicity?
the ability of a microorganism to produce disease
what is virulence?
the degree of pathogenicity of an organism ie how easily can the organism cause disease
how do bacteria replicate?
binary fission
what 4 main factors do bacteria require for growth?
- food (any organic material)
- moisture
- correct temperature
- correct pH
for human pathogen what is generally the temperature and pH required for growth?
temperature- 37 degrees
pH- 7.4
what are the 4 phase to a bacterial growth curve?
- lag phase (BR slightly> DR)
- log phase (BR greatly> DR)
- stationary phase (BR = DR)
4, death phase (BR < DR)
what are the 3 types of atmosphere a bacterium might require for growth?
aerobic (growth in presence of oxygen, most aerobes will grow in anaerobic conditions too, just less well)
microaerophilic (growth in an atmosphere with a reduced conc of oxygen and enriched CO2 conc)
anaerobic (growth in absence of oxygen, anaerobes is a term reserves for strict anaerobes)
what is an exotoxin?
toxin produced inside a bacteria cell and then exported from it
what type of bacteria make exotoxins?
gram positive bacteria
what is an endotoxin?
a toxin which is part of bacterial cell wall
what type of bacteria make endotoxins?
gram negative bacteria
what are the 2 main affects of bacterial toxins?
1, cause release of cytokines from immune cells
2. cause damage to red and white blood cells and make blood vessels ‘leaky’
what results from damage to RBC and WBC as well as ‘leaky blood’ vessel?
reduced clottting ability, reduced blood pressure resulting in sepis and septic shock
what type of bacteria can form spores?
Gram positive bacilli
eg Clostridium difficile and Bacillus anthracis
what are spores?
inactive, tough forms of bacteria which cannot replicate but can survive adverse conditions for many years and become active when conditions become more suitable
what 3 steps occur in spore formation?
- chromosome condensation
- septum formation
- calcium dipicolinate accumulation in the core
what does the core of a spore consist of?
cytoplasm plus contents
cytoplasmic membrane
what surrounds the core of a spore?
exosporium
what type of animals is anthrax usually a disease of?
cows and sheep
what are the 5 main diagnostic methods for bacteria?
- microscopy (gram film)
- culture
- antigen detection (eg in urine)
- serology (antibody detection in blood
- PCR
how long does microscopy take?
same day
how long does PCR take?
same day
how long does culture with sensitivity testing take?
2 days, 24 hours for organism growth, 24 hours for sensitivity
how long does serology take?
same day
how long does TB culture take?
4-12 weeks
what are the 2 types of fungi?
moulds
yeast
how do mould spores spread?
air currents
how do mould hyphae spread?
invade organic tissue
how do yeast reproduce?
budding
what type of treatment is used for fugnal infections?
anti-fungals
what is the most common cause of mould infection in humans?
Aspergillus spp
what type of people does Aspergillus sp usually target?
immunocomprimised
opportunistic
what is the most common cause of fungal infection in humans?
Candida spp (a type of yeast)
how do yeasts gram stain?
large Gram positive oval structures
how do moulds gram stain?
they dont
what are single celled parasites called?
protozoa
what are the 4 steilisation methods used?
- steam under pressure (autoclaves)
- dry heat in oven at 160 degrees for 1 hour+
- exposure to ethylene oxoid gas
- gamma-irradiation
compare sterilisation to disinfectants.
sterilisation removes 99.9% of micro-organisms
disinfection removes pathogenic microorganisms
what are the 2 ways of disinfection?
hot water
chemicals eg bleach, handwash, skin antiseptic
what does sp mean?
1 species of the genus
what does spp mean?
more than 1 species of the genus
what are the genus’s of the gram positive cocci?
Streptoccci spp (and Enterococci sp) Staphylococcus spp
what type of bacteria are Streptococcus spp and Enterococcus sp (with respects to the environment the prefer to live in)?
aerobic organisms
faculative anaerobic
(grow best aeobically but can grow anaerobically too if they need to)
what type of colonies do Streptococcus spp and Enterococcus sp like to grow in?
chains (strips)
how do you differentiate between Streptococcus spp and Enterococcus sp?
by the type of haemolysis
this is the only bacteria where it is important for classification
what types of haemolysis are there?
alpha- partial haemolysis
beta- complete haemolysis
gamma- no haemolysis
what does alpha haemolysis mean?
partial haemolysis that is caused by enzymes that denature the haemoglobin inside red blood cells causing greenish discolourisation round the colony
what does beta haemolysis mean?
complete haemolysis caused by enzymes (exotosins) that lyse the red blood cells completely clearing round the colony
what haemolytic class of Streptococci are the most pathogenic?
beta-haemolytic
what haemolytic class are Enterococcus sp?
non-haemolytic
what type of agar needs to be used for culturing bacteria when haemolysis is important?
blood agar
what 2 bacterial species are the alpha-haemolytic streptococci divided into?
Streptococcus pneumoniae
Strptococcus “viridans” (a group of different species)
what is the other name for Strptococcus pneumoniae?
pneumococcus
Describe what you would see on gram film for Streptococcus pneumoniae?
Gram positive cocci in short chains or pairs (diplococci)
what is the bacterium responsible for the most commonest cause of pneumonia?
Streptococcus pneumoniae
Describe what you would see on gram film for Streptococcus “viridans”?
Gram positive coci in chains
What sites are Strep. “viridans” common comensals of?
resp tract
bowel
vagina
What type of sites does Strep “viridans” cause infection in?
sterile site
What is a heart infection that can be caused by Strep “viridans”?
infective endocarditis (infection of the heart valves)
what 2 groups can the beta-haemolytic Streptococcus spp be divided into?
Group A strep (Strep. pyogenes)
Group B strep
What is the most pathogenic of all the Streptococci?
Strep. pyrogenes
what infections can Strep pyrogenes cause?
- Streptococcal sore throat
- Skin and soft tissue infections
- Puerperal sepsis
what is the infection caused by Streptococcal sore throat?
tonsilitis
or scarlet fever if rash also present
What is the most severe skin and soft tissue infection caused by Strep. pyogenes?
necrotising fasciitis
what is puerperal sepsis?
a severs life-threatening infection in pregnant and recently post-natal women
Give 2 examples of Enterococci? (non-haemolytic streptococci)
Enterococcus faecalis
Enterococcus faecium
if Enterococcus faecalis and Enterococcus faecium are both part of normal bowel flora why can they sometimes cause problems? (eg UTI)
problematic if they get into sterile site