Microbiology Flashcards
What is the classical lesion seen in TB?
Caseating granulomas
Risk factors of TB?
Travel (South Asia and Eastern Europe)
HIV+
Homelessness
IVDU
Contact
Presentation of TB
General: fever, night sweats, weight loss
Respiratory: cough, haemoptysis
Less commonly..(seen in immunosuppression)
Subacute meningitis: headaches, personality change, meningism, confusion. Diagnose with LP
Spinal (Pott’s disease): back pain, discitis, vertebral destruction, iliopsoas abscess
Milliary TB: disseminated haematogenous spread (seen on CXR)
Also lymphadenitis, pericarditis, peritonitis, renal, testicular, liver TB
Investigations for TB?
CXR - showing upper lobe aviation (post-primary activation)
Sputum samples (x3): Ziehl-Neelson microscopy and 6 week Lowenstein-Jensen culture for acid-fast bacilli
IGRA - shows exposure (active or latent)
PCR (showing rifampicin resistance)
TB treatment (inc side effects)
Rifampicin (6 months) - orange secretions; cytochrome p450 inducer
Isoniazid (6 months) - peripheral neuropathy
Pyrazinamide (2 months) - hepatotoxicity, gout “painful joint”
Ethambutol (2 months) - optic neuritis
RIPE
Typical pneumonia organisms
Streptococcus pneumonia (most common); rust-coloured sputum, lobar on CXR; +ve diplococci
Haemophilus influenza; smokers and COPD; -ve cocco-bacilli
Morazella catarrhalis; smokers; COPD; -ve cocci
Staphylococcus aureus; recent viral infection ± CXR cavitation; +ve cocci “grape-bunch clusters”
Klebsiella pneumonia; alcoholics, elderly, haemoptysis; -ve bacillus, enterobacter
Atypical pneumonia cases
Legionella pneumophilia: Travel, air conditioning, water towers, hepatitis, hyponatraemia
Mycoplasma pneumoniae:
Uni students / boarding schools, dry cough, arthralgia, cold agglutinin test / AIHA, erythema multiforme
Chlamydia psittaci: Birds
Chlamydia pneumoniae
Respiratory tract infections in HIV patients?
Pneumocystis jirovecii pneumonia (PCP)
TB
Cryptococcus neoformans
Respiratory tract infections in patients with splenectomy?
Encapsulated organisms:
Haemophilus influenza
Streptococcus pneumoniae
Neisseria Meningitidis
Respiratory tract infections in cystic fibrosis patients?
Pseudomonas aeruginosa
Burkholderia cepacia
Respiratory tract infections in neutropoenic patients?
Aspergillus
What is the CURB-65 score?
Helps determine treatment for community-acquired pneumonia
Confusion
Urea >7
Respiratory rate >30
BP <90/60
≥65yo
Pathogens in acute infective endocarditis?
These are high-virulence bacteria:
Streptococcus pyogenes (Group A Strep)
Staphylococcus aureus (common in IVDU)
Coagulase-negative staphylococci (common in prosthetic valve)
Pathogens in subacute infective endocarditis?
These are usually low-virulence bacteria:
Staphylococcus epidermis
Streptococcus viridans
HACEK (uncommon and culture -ve)
Haemophilus
Acinetobacter
Cardiobacterium
Eikinella
Kingella
What is the criteria for diagnosis infective endocarditis?
Duke’s Criteria (2 major OR 1 major + 3 minor OR 5 minor)
Major:
* Positive blood culture growing typical organisms (>2x cultures >12hrs apart)
* New regurgitant murmur or evidence of vegetation on echo
Minor:
* Presence of risk factors
* Fever >38ºC
* Presence of embolic phenomena
* Presence of immune phenomena
* Positive blood cultures not meeting major criteria
Common UTI organisms
E. coli (most common) - adhesion with fimbriae
Staphylococcus saphrophyticus - common in young females
Proteus, Klebsiella - in abnormal urinary tracts
Staphylococcus aureus - via haematogenous spread
What is antigenic drift?
Accumulation of point mutations due to error prone RNA polymerases which changes the nature of the antigen overtime
What is antigenic shift?
Recombination of genomic segments of two co-infecting flu strains –> leads to potential rapid whole antigenic change for a viral strain.
Potentially allows exchange of RNA segments between human and animal strains
Antivirals used for influenza
Amantadine (M2 ion channel targeted)
Baloxavir (polymerase inhibitor)
Oral oseltamivir, inhaled zanamivir, IV peramivir (neuroaminidase inhibitor)
Congenital infections in neonates
TORCH
Toxoplasmosis
Other (HIV, HBV)
Rubella
CMV
HSV
Causes of early onset sepsis (<48hrs) in neonates
Primary: Group B streptococci
Others: E. coli, Listeria
Causes of late onset sepsis (>48hrs) in neonates
Coagulase negative staphylococcus
GBS
E. coli
Listeria
Organisms that cause bacterial meningitis
Neisseria meningitidis (non-blanching petechial rash) - most common >3 months of age
Streptococcus pneumoniae - <2yr old
Haemophilus influenzae - <3 months old and unvaccinated children
GBS, E.coli, Listeria - common in 1-3 months so give amoxicillin (empirical Abx)
Organisms that cause UTIs
Primary: E. coli
Proteus
Klebsiella
Enterococcus
*Need to culture >10^5/ml
Will see pyuria (pus cells) on microscopy