Micro 1 Flashcards
What organisms naturally colonize the large intestine?
Anaerobes - bacteroides (10^11 /g fecal mater)
What organisms naturally colonize the skin?
Yeast and gram + organisms
What organisms naturally colonize the mouth?
anaerobes - density sim to lg. intestine
What organisms colonize the nose and pharynx?
Gram + and - cocci (Neisseriae and Moraxella)
Gram + rods (Corynebacterium)
The rest of the respiratory tract is sterile
What organisms normally colonize the urogenital tract?
Urethra - transiently colonized
Vagina - changes w/ age: gram + cocci (staph, strep) before puberty; Lactobacillus Acidophilus after puberty (reduces pH and maintains uniform flora)
What is the procedure for gram staining?
Heat fix Crystal Violet - then rinse Iodine - then rinse Acetone or Isopropyl alcohol - then rinse Safranin - rinse then dry
What is the mechanism of Gram staining?
Iodine - crystal violet complex is too large to wash out of gram +
Describe acid fast bacteria
Mycobacterium (TB)
Cell walls contain long chain fatty (mycolic) acids, do not gram stain well.
Stain w/ carbol fuchsin, decolorize w/ 3% HCl and ETOH - acid fast will remain red
What is lipoteichoic acid and where is it found?
Part of gram + cell wall - strengthens
Endotoxin - can evoke immune response from humans
Where are gram - toxins housed?
Periplasmic space - between inner cell membrane and peptidoglycan cell wall
ex: cholera toxin
Cell wall components
Disaccharide-pentapeptide subunits
N-acetylglucosamine (NAG) and N-acetylmuramic acid (NAM)
Peptide bridges between NAM cross link subunits (determine thickness of wall)
Gram +: pentaglycine links D-ala and lysine
Gram -: direct link between D-ala and diaminopimelic acid
What is mycolic acid?
Component of Acid Fast Bacteria cell wall
resistant to phagocyte killing and drying
What are components of gram - outer membrane?
Lipopolysaccharides (LPS) and phospholipids
LPS: virulence factor (endotoxin), mediates inflammation, septic shock
LPS composed of
-O antigen: repeating sugars - used for typing bacteria
-core sugars
-fatty acid moieties - bioactive portion of LPS
What is a bacterial capsule?
Both Gram + and - bacteria
High MW polysaccharides or amino acids
production depends on enviro and growth conditions
Virulence factor
Protection from complement mediated killing
What are pili and what are they made of?
proteinaceous structures extending from cell membrane
made of pilin, tipped w/ adhesins which bind host tissue (receptors) - virulence factor- antigenic
1. common type: mediate adhesion to host eukaryotic cells
2. sex type: join conjugating bacteria
What are flagella made of? Are they antigenic?
Flagellin
highly antigenic - H antigen
3 spore forming bacteria and assoc. diseases
clostridium tetani - tetanus
bacillus anthracis - anthrax
clostridium botulinum - botulism
How do Beta-Lactams work?
Inhibit final step of cell wall synthesis - transpeptidation by Penicillin Binding Proteins (PBPs)
What is the mechanism of penicillinase resistance in resistant penicillins?
Bulky side chains - sterically hinder B-lactamase binding
What coverage do beta-lactam / beta-lactamase inhibitor combo drugs offer?
Improved gram (-) and anaerobe MSSA
What classes of bacteria are highly resistant to pecinillins?
aerobic gram - bacilli
anaerobes
What are beta-lactamase inhibitors?
Suicide inhibitors
Bind beta-lactamase -> inactive compound
What are common side-effects of Penicillin drugs?
Allergic reaction - from a rash to anaphylaxis
-may be due to B-lactam ring or to side chains
Acute Interstitial Nephritis - allergic rxn in kidney
- fever, rash, eosinophilia
- non-oliguric renal failure, may progress to anuria and kidney failure
- eosinophilic cells and tubular damage seen on biopsy
Probenecid
Gout medication given to prolong effect of Penecillin - blocks renal elimination
Used for persistent infections - syphillis
What do cephalosporins NOT have activity against?
Enterococcus
What drugs would most likely be used to treat community acquired intra-abdominal infections or for surgical prophylaxis?
2nd gen cephalosporins - cephamycins
Cefotetan or Cefoxitin
What is the drug of choice for community acquired pneumonia (s.pneumo)?
Cephtriaxone - 3rd gen cephalosporin
What are the SPICE organisms?
Serratia, Providencia, Indole (+) Proteus, Citrobacter, Enterobacter
- all have B-lactamase
- lab may say susceptible to 3rd gen Cephalosporin, but use may select resistant strain
- usually use cefepime or carbapenems
What cephalosporins have activity against anaerobic bacteria?
Cefotetan, Cefoxitin - 2nd gen (2B or GI) cephamycins
Ceftaroline
Advanced generation cephalosporin
Binds PBP2A and 2X
MRSA - first B-lactam w/ activity against.
Gram (-) activity between 2nd and 3rd gen
Cephalosporin / Penicillin cross-reactivity
Chance of those w/ penicillin allergy having allergy to cephalosporin
5-15% according to book, actually much lower (0-2%)
-may be due to lactam ring (unlikely) or side chains
–Ceftazadime and Aztreonam: identical side chains. Az billed as having no x-reactivity w/ Penicillins. If Cef allergic, probably Az allergic
What organisms are most commonly associated with ESBL?
ESBL - extended spectrum beta-lactamase
E.coli K.pneumoniae
Carbapenem is drug of choice
B-lactams and renal dosing
Almost all renally eliminated and need renal dosing adjustments
exceptions:
-Ceftriaxone
-Penicillinase resistant Penicillins
1st generation cephalosporins and what used for
Cephalexin, Cefazolin, Cefadroxil
Skin, lower UTI
Good gram +, Staph, MSSA, Strep (variable S.pneumoniae)
Bad gram -, no anaerobic activity
Not for use in neonates - bind Ca++ -> gallstones, biliary sludging
2nd Generation cephalosporins and what for
2A: Cephlacor, Cefuroxime - Respiratory infections
good gram(+), better S.pneumoniae,
2B: Cefotetan, Cefoxitin - cephamycins - GI infections excellent for anaerobes
community acquired intra-abdominal infections and surgical prophylaxis.
3rd generation cephalosporins and what used for
Ceftriaxone(IV), Cefotaxime, Cefixime, cefpodoxime(PO)
Ceftriaxone - DOC for CAP, DOC for CAM unless B-lactone resistant
Ceftazadime - Pseudomonas aeruginosa (PSA)
Excellent nosocomial gram(-)
Not great staph - quesionable MSSA
No PSA, no anaerobes
SPICE organisms - tendency to induce resistance
4th generation cephalosporins and what used for
Cefepime Good gram (+): Strep, staph, MSSA Good gram (-): excellent against nosocomial infections SPICE organsism (Serratia, Providencia, indole (+) proteus, citrobacter, enterobacter)
Advanced generation cephalosporin and what used for
Ceftaroline
Binds PBP2A and PBP2X
MRSA coverage
better S.pneumoniae, ampicillin-sensitive E.faecalis
Gram(-) is between 2nd and 3rd gen. ability
What is ESBL and what are most common organisms encountered?
Extended Spectrum Beta-Lactamase
E.coli and K.pneumoniae - can be transferred to other enterobacteria
Renders resistance to all penicillins, cephalosporins and aztreonam
Carbapenems are DOC**
What are the carbapenems and what do they cover?
group 1: Ertapenem - DOC for ESBL organisms good gram (+) great gram (-) except APE: acinetobacter, PSA, enterobacter
group 2: Imipenem, Meropenem, Doripenem
good gram (+)
great gram (-): ESBL, PSA, A.Baumanii (decreasing effectiveness)
anaerobes: excellent, but no c.diff
in general - used for multi-drug resistant organisms*
What do carbapenems not cover?
MRSA ampicillin resistant enterobacteria stenotrophomonasmaltophilia KPC (carbapenemase) C.diff (can cause c.diff)
What is the biggest side effect of carbapenems?
Seizures Not likely, though. Prob related to cilastatin (added to increase half-life) More likely w/ high dose. Cross-reactivity w/ penicillins 1-50%
Aztreonam
Used for empiric treatment of gram (-) organisms in patients w/ Penicillin allergy
PSA activity, but not great
No ESBL, no x-reactivity w/ penicillins
What drugs are useful against Acinetobacter baumannii?
DOC: ampicillin/sulbactam - given for sulbactam alone
Imipenem, Meropenem, Doripenem - decreasing effectiveness
How do aminoglycosides work?
Bind 30s ribosomal subunit - inhibit protein synthesis
BacterioCIDAL, concentration dependent killing (high dose preferred)
Oxygen dependent transport - so no activity vs. anaerobes
Note: no oral absorption, high conc. in urine - good for UTI
What are the individual aminoglycosides and what are they used for?
Gentamycin: staph and enterococcus in comb. w/ B-lactam
-also eye ointment
Tobramycin / Amikacin: Empiric nosocomial (double coverage)
-sometimes definitive as well. Ami: mycobacterial
Neomycin: Oral - GI decontam pre-op. Topical - neosporin
Streptomycin: enterococcal infection when gentamycin resistant.
-mycobacterial infection
Mechanisms of aminoglycoside resistance
- Addition of side chains by Transferase enzymes - prevent drug binding
- 30s modification
- Efflux pumps / decreased porin production -> decreased intracellular concentration
Aminoglycoside adverse events
Nephrotoxicity - most common. Minimize trough concentrations
Vestibular/ Ototoxicity - assoc. w/ total drug exposure (irreversible)
Neuromuscular Blockade - additive w/ other drugs (myasthenia gravis)
What are the floroquinalone drugs and what are they used for?
Moxifloxacin, Levofloxacin, Ciprofloxacin, Gemifloxacin and Norfloxacin
Respiratory: Levo and Moxi: Excellent against all CAP
PSA: Cipro and Levo: also enteric gram (-)
Anaerobes: Moxi (some B.fragilis activity)
Floroquinolone side effects
CNS toxicity: headache, dizziness, insomnia, seizures
Damage to growing cartilage: no use w/ peds
Dysglycemia
Cardiac arrhythmia / torsades (min risk unless prone to arr. or on QT prolonging drugs - Moxi highest risk
What drug interactions are floroquinalones prone to
Chelation effect: Reduced absorption when taken w/ divalent cations (Ca++, Mg++, Fe++)
What is Red Man Syndrome?
Histamine response to rapid infusion of vancomycin - not a true allergic reaction
non-specific mast cell degranulation
infusion should not exceed 1g/hr. pretreatment w/ diphenhydramine
What are the treatment options for VRE?
Linezolid
Daptomycin
Quinupristin / dalfopristin (E. faecium only)
Tigecyclin (other tetracyclines maybe)
What is the mechanism of Vancomycin resistance in Enterococci and Staph A?
D-ala D-ala becomes D-ala D-lac or D-ser
Vancomycin can’t bind
What is the “erm” gene?
Confers MLS resistance to S.aureus (Macroside, Lincosamide, Streptogramin)
- all 3 work at same ribosome site
If isolate says erythromycin resistant and clindamycin susceptible
D test to check for MLS before using clindamycin
How do you deal with yeast in the blood?
Confirm not at risk for Cryptococcus (immunosuppressed, HIV) Is almost always Candida -Albicans > Glabrata Risk for fluconazole resistance? -recent exposure or known colonizer of C.glabrata Critically ill? Yes -> Echinocandin No -> Fluconazole
What mechanisms do microorganisms employ to avoid ciliary action of the respiratory system?
Development of strong adhesins
-Rhinovirus: capsid protein attaches to ICAM-1
-Mycoplasma pneumonia attaches to neuraminic acid on host respiratory epithelium
Paralysis of ciliary action
-Bordatella pertussis - tracheal cytotoxin
-Influenza virus -> ciliated cell disfunction
What organisms are most associated with skin infections?
S. aureus
S. pyogenes