Metabolism: Overview Flashcards

1
Q

What fuel sources can the brain use/store?

A

Brain primarily uses glucose, and uses a lot of it! It can also use ketone bodies in times of starvation

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2
Q

What fuel sources can muscles use/store?

A

Muscles are the main store of glycogen in the body. They use glucose, fatty acids, and ketone bodies as fuel. They’re able to send lactate back to the liver to form more glucose (cori cycle) and can send alanine to the liver to form more glucose (glucose-alanine cycle) in the case of muscle protein breakdown

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3
Q

What fuel sources does the liver use/store?

A

The liver pulls the majority of glucose from the blood supply for manufacture of fatty acids, glycogen, ketone bodies. The liver processes a lot of the body’s glucose. The liver produces glucose from glycogen stores for the rest of the body, and generates NADPH from the pentose phosphate pathway

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4
Q

What fuel sources do fat tissues use/store?

A

Fat tissues mostly store triacylglycerides (fatty acids + glycerol). Glycerol can be used to form glycogen or broken down into glucose for glycolysis depending on needs. Fatty acids are degraded to acetyl CoA to produce energy.

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5
Q

What fuel sources do RBCs use/store?

A

Red blood cells don’t have mitochondria, so they can only produce energy from the steps of glycolysis. They use glucose

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6
Q

Are GLUT transporters passive or active?

A

Passive. Glucose has to be passed along the concentration gradient.

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7
Q

What are the differences between GLUT 1, 2, 3, & 4?

A

Glut 1 has a low Km (high binding affinity) and is seen in all cells. It accommodates the basic glucose needs of a cell.
Glut 2 has a higher Km (low binding affinity) and is only found in the liver. Glut 2 is bidirectional, it can pass glucose into and out of the liver.
Glut 3 is like Glut 1 but found only in neurons (extra glut 3 in neurons for extra glucose needs). It has a slightly lower Km.
Glut 4 is used in muscle cells, and can be increased in number from aerobic exercise over time. Subject to insulin regulation.

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8
Q

What is insulin’s mechanism of action?

A

Insulin binds to a receptor tyrosine kinase dimer and activates protein kinases. these kinases deactivate glycogen synthase kinase (which is trying to deactivate glycogen synthase by phosphorylating it) and allows glycogen synthase to remain active. In other pathways insulin activates a phosphatase to pull phosphates off of enzymes.

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9
Q

What is glucagon’s mechanism of action?

A

Glucagon binds to a GPCR, which goes to activate adenylate cyclase, which produces cAMP from ATP. cAMP activates PKA (protein kinase A), which phosphorylates phosphorylase kinase, which phosphorylates phosphorylase (which causes glycogen breakdown)

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10
Q

What is epinephrine’s mechanism of action?

A

Epinephrine binds to a GPCR, which goes on to activate adenylate cyclase, which causes cAMP to activate PKA.

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11
Q

What are acini?

A

Small clusters of cells around a duct used for secretion or absorption.

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12
Q

What are islets of langerhans?

A

Pancreatic clusters of alpha and beta cells, where secretion of insulin (beta) and glucagon (alpha) actually occurs.

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13
Q

Where is epinephrine made? What stimulates secretion of epinephrine? What does it do?

A

Epinephrine is made in the adrenal medula. Its secretion is boosted during stressful moments, or during exercise. Epinephrine is key in the “fight or flight” response of the body to stress. It pushes homeostasis towards the breakdown/use of energy bearing molecules (glucose, fatty acids)

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14
Q

Does insulin cause an increase or decrease in blood glucose levels?

A

Decrease! Insulin leads to the stimulation of glycolysis, which consumes glucose for energy. Insulin activates phosphoprotein phosphatase-I which takes a phosphate off of pyruvate kinase and pushes it into the active state, which encourages glycolysis.
Insulin activates phosphoprotein phosphatase-I which takes a phosphate off of glycogen synthase (activating it in this case) and encourages glycogen production

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15
Q

Does glucagon cause an increase or decrease in blood glucose levels?

A

Increase! Glucagon leads to stimulation of the gluconeogenesis pathway, which leads to the production of glucose. Glucagon activates protein kinase A, which phosphorylates (deactivates in this case) PFK2. PFK2 normally turns F6P into F26bP, which stimulates PFK1 and glycolysis, but is inhibited. So blood glucose is not being used up in glycolysis. In the glycogen pathway, glucagon causes PKA to phosphporylate (activate in this case) phosphorylase kinase, which phosphorylates (activates) glycogen phosphorylase. Glycogen phosphorylase cuts G-1Ps off of glycogen. Gluconeogenesis is not necessarily boosted by glucagon, but since glycolysis has been inhibited gluconeogenesis is able to predominate.

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16
Q

What happens in the fed state (general)?

A

Glycolysis begins, glycogen synthesis begins, fatty acid synthesis begins. Proteins are broken down, digested in the urea cycle.

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17
Q

What happens in the fasting state (general)?

A

Energy reserves are released. Glycolysis is inhibited. Gluconeogenesis begins.

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18
Q

What happens in the stressed state (general)?

A

Epinephrine is released. The body releases any stored energy so the muscles can be maximally active. Glycolysis continues

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19
Q

What are VLDLs?

A

Denser (than chylomicrons) fatty acid storage molecules used to transport triacylglycerides from the liver to fat cells.

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20
Q

What are chylomicrons?

A

Fatty acid storage molecules used to transport triacylglycerides from the intestine to fat cells and muscle cells.

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21
Q

Draw the framework of human metabolism

A

glycolysis & gluconeogenesis, glycogen synthesis & breakdown, amino acid breakdown & synthesis, fatty acid breakdown & synthesis, Krebs & electron transport chain, urea cycle. Pentose phosphate pathway, lactate production,

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22
Q

What is the Cori cycle?

A

Transport of lactate back into the liver, transformation of lactate into glucose, and then the return of glucose to the muscle. This is used in times of fasting or intense exercise, when you lack access to ingested glucose but need energy rapidly. The cycle costs energy, but is used in desperation.

23
Q

What is the alanine-glucose cycle?

A

Transport of protein degradation byproduct alanine to the liver where it can be turned into glucose. Glucose is sent back to the muscles to meet energy needs. This protein degradation is pretty serious, and the cycle is even less efficient than the Cori cycle because it requires the excretion of NH4+ as urea

24
Q

What is volume of distribution?

A

Vd (how efficiently drugs distribute in the body) = dose/concentration of drug in plasma

25
Q

What is the henderson hasslebach equation for acids & for bases?

A

A-/HA = 10^(pH-pka)

B/HB+ =10^(pH-pka)

26
Q

Why doesn’t pkA tell you whether something is an acid or not?

A

It doesn’t matter what a pKA is. What determines an acid is if it can donate a hydrogen, and what determines a base is if it can accept a hydrogen

27
Q

Why does is creation of glucose 6 phosphate a committed step in glycolysis?

A

G6P can’t leave through GLUT transporters. High concentrations of G6P will lead to glycolysis (phosphoglucose isomerase to F6P, pfk1 to F16bP, so forth)

28
Q

What is pfk2?

A

Phosphofructokinase2. When f6p is present in the body, pfk2 turns some of it into f26bp, which is an allosteric promoter of pfk1, which turns f6p to f16bp, which is a key step in glycolysis. PFK2 is activated by insulin, which removes a phosphate from pfk2’s binding domain (pfk2 is inactive when phosphorylated)

29
Q

What is pyruvate kinase? what regulates pyruvate kinase?

A

Pyruvate kinase takes you from phosphoenolpyruvate to pyruvate. It releases an ATP. Pyruvate kinase is positively regulated by fructose 1,6 biphosphate. It is negatively regulated by ATP and alanine (alanine glucose cycle is used when you’re starving, so presence of alanine should stop glucose from being used up). It is activated by insulin (inactive when phosphorylated, insulin activates phosphoprotein phosphatase, which removes phosphate group and activates pyruvate kinase) and is inactivated by glucagon (opposite)

30
Q

What is pyruvate dehydrogenase complex? What regulates pyruvate dehydrogenase complex?

A

Pyruvate dehydrogenase complex is used to transition from pyruvate to Acetyl CoA. NAD+ goes to NADH and a CO2 is released. Pyruvate dehydrogenase complex is positively regulated by the presence of ADP and pyruvate. The enzyme is negatively regulated by the presence of NADH and ATP. PDC is active when “naked” and inactive when phosphorylated. In the muscle PDC is activated by Ca2+ levels.

31
Q

What regulates hexokinase?

A

Hexokinase is regulated by presence of G6P (its end product, so this is negative feedback)

32
Q

What’s the difference between hexokinase and glucokinase?

A

hexokinase is in all cells, glucokinase is in liver cells. Glucokinase has worse binding affinity for glucose than hexokinase does. This is so the liver does’t steal glucose before the body has met its needs.

33
Q

What steps in the TCA cycle produce energy or high energy products? Co2?

A

acetyl coa preparation (CO2 and NADH) isocitrate dehydrogenase (CO2 and NADH) alpha ketoglutarate dehydrogenase (CO2 and NADH) succinyl thiokinase (GTP), succinate dehydrogenase (FADH2), malate dehydrogenase (NADH)

34
Q

What is oxaloacetate used for in the body?

A

TCA cycle intermediate. Aminated to form aspartate (amino acid, used in urea cycle), gluconeogenesis intermediate, fatty acid synthesis (transport)

35
Q

What does the pentose phosphate pathway output?

A

Produces NADPH and ribulose 5 phosphate (can be converted into nucleotides)

36
Q

What is NADPH used for?

A

NADPH is used for fatty acid synthesis, and protein synthesis, and elimination of toxins from the body (alcohol metabolism)

37
Q

What molecule is used to make glycogen? What molecule is broken off of glycogen during glycogen use?

A

UDP-G + glycogenin, glycogen synthase, branching enzyme

G1P. enzyme used is glycogen dehydrogenase

38
Q

What is beta oxidation? What are the steps?

A

Beta oxidation is the degradation of fatty acids at the beta carbon (third carbon, starting at carboxyl carbon in the head). Beta oxidation breaks acetyl CoA molecules off of fatty acids. acyl coa dehydrogenase oxidizes beta carbon. enoyl coa hydratase hydrates oxidized carbon. b hydroxy acyl coa dehydrogenase + NAD+ dehydrate fatty acid. b keto thiolase cuts acetyl CoA off.

39
Q

What is citrulline?

A

Citrulline is an intermediate in the urea cycle. it is formed from the combination of carbamoyl phosphate with ornithine, and is the first step in the urea cycle. Citrulline is turned into argino succinate through the addition of aspartate.

40
Q

What are the steps of glycogen synthesis?

A

Glycogenin molecule starts things off. Glycogen synthase adds UDP Glucose to glycogenin strand. After strand reaches at least 11 long, branching enzymes create new branches with alpha 1-6 linkages. UDP glucose is formed by g6p to g1p phosphoglucomutase, g1p to udp g by udp glucose phosphorylase (glycogen synthesis takes energy)

41
Q

What are the steps of glycogen breakdown?

A

Glycogen phosphorylase cleaves alpha 1-4 bonds up until 4 left on a branch. transferase takes glucose residues and adds it onto the next branch. alpha 1-6 glucosidase breaks the branched bond. Glycogen residues are broken off as g-1p

42
Q

What is the TCA cycle?

A

creates high energy substrates for electron transport chain. input is acetyl CoA. Acetyl CoA + OAA –> (citrate synthase) –> citrate + CoA
citrate –> (aconitase) –> isocitrate
isocitrate + NAD –> (isocitrate dehydrogenase) –> alpha keto glutarate + NADH + CO2
alpha keto glutarate + NAD + CoA –> (alpha keto glutarate dehydrogenase) –> NADH + succinyl CoA
succinyl CoA + GDP –> (succinyl thiokinase) –> GTP + succinate
succinate + FAD –> (succinyate dehydrogenase) –> FADH2 + fumarate
fumarate + H2O –> (fumarase) –> malate
malate + NAD –> (malate dehydrogenase) –> Oxaloacetate + NADH

43
Q

What is the electron transport chain?

A

converts NADH and FADH2 to energy through proton pump. Complex 1 picks up NADH’s electrons, pushes 4 H+ off. electrons jump from redox center to redox center with better binding affinity. End up on coenzyme Q, which transports electrons to complex 3. Complex 2 picks up electrons and transfers them to complex 3 without producing any energy upfront (this is why FADH2 isn’t as efficient). Complex 2 also passes through coenzyme Q. Complex 3 pushes 2 H+ out. Complex 4 turns O2 + H+ into water, pushes 4 h+ apart.

44
Q

What is the overall reaction of glycolysis?

A

2 ADP + glucose + 2NAD –> 2 ATP + 2 pyruvate + 2NADH + 2H20

45
Q

What are the products of TCA from 1 glucose breakdown?

A

2NADH (pyruvate to acetyl CoA) + 6 NADH + 2FADH2 + 2GTP

46
Q

What are the products of gluconeogenesis?

A

2 pyruvate + 2GTP + 2ATP + 2NADH + 6H2O –> glucose + 2 GDP + 2 ADP + 2 NAD + 6 H+

47
Q

Where does the TCA cycle occur?

A

Mitochondria!

48
Q

What is pyruvate carboxylase?

A

used in gluconeogenesis to go from pyruvate to oxaloacetate. Takes GTP

49
Q

What is phosphoenolpyruvate carboxykinase?

A

used in gluconeogenesis to go from oxaloacetate to phosphoenolpyruvate. Takes ATP

50
Q

How are fatty acids synthesized?

A

Fatty acid synthase, ACP binding regions, SH heads. Acetyl CoA binds to SH head. Malonyl CoA replaces it, attacks Acetyl Coa, extends the chain. Ketoreductase reduces keto groups to alcohols on the newly formed chain. Dehydratase removes water by making double bond. Enoyl reductase gets rid of the double bond.

51
Q

What is the committed step in fatty acid synthesis?

A

Formation of malonyl CoA from acetyl CoA by acetyl CoA carboxylase 1

52
Q

What actually happens to oxaloacetate in gluconeogenesis?

A

It’s initially in the mitochondria but needs to get outside the mitochondria. To do this, oxaloacetate is converted to malate, transported across the membrane, and then converted back into oxaloacetate.

53
Q

How are excess amino acids dealt with?

A

They’re broken down and used in glycolysis or gluconeogenesis. The ammonia group has to gotten rid of, which is what the urea cycle is for. the urea cyle turns excess NH4 into urea which can be peed out.

54
Q

What enzyme catalyzes the reaction of pyruvate to lactate? When is it used?

A

Lactate dehydrogenase + NADH gets you to pyruvate + NAD. So pyruvate to lactate dehydrogenase is a great way to get some NADH to continue glycolysis with.