Metabolism Flashcards
What can entropy measure?
Wasted energy, degree of disorder, how widely energy is distributed
How can you cheat second law?
Couple reactions
What does ATP energy of hydrolysis depend on?
Concentrations of reaction and products, Mg2+, Ca2+ and H2O
Entropy change = ?
Standard entropy change + RTln ([products]/[reactants])
Why is ATP hydrolysis so exothermic?
Phosphate and ADP have more resonance stabilisation than ATP so can spread out -ve charge, electrostatic repulsion weakens POP bridge, stabilisation due to hydration because more water can bind to ADP and Pi than ATP
What is the phosphorylation potential?
Free energy of ATP hydrolysis is its phosphorylation potential
Which reactions is ATP coupled to?
Phosphorylates glucose to prime its breakdown to pyruvate, peptides more unstable than amino acids so use ATP to build them, joining two nucleic acids
What carries CO2?
Biotin
What carries glucose?
Uridine diphosphate glucose (ADP)
What is the redox system for energy reducing pathways?
NAD/NADH
What is the redox system for biosynthesis? Why?
NADP/NADPH - phosphate group allows enzymes to recognise this redox system
Why does acetyl CoA have lower delta G than ATP and why is it more exothermic?
Less stabilised by resonance
How is the acetyl group bonded in acetyl CoA?
As thioester (activated acetyl group)
What can the heart metabolise?
Fat, glucose, ketone bodies, lactate
How many ATP does glycolysis make?
2
How many ATP does Krebs make?
30
What controls entry of glucose into fat and muscle?
GluT4
What controls entry of glucose into liver cell?
GluT2
What are the three phases of glycolysis?
Chemical priming, cleavage, energy yielding
What is delta G like in glycolysis?
Only just favourable
What are interconvertible isomers during glycolysis?
G3P and DHAP
Why is glucose > G6P irreversible?
Large free energy change
What happens to the aldehyde in glyceraldehyde? Where does the oxygen come from and what is the reducing agent?
Converted to a carboxylic acid - oxygen from water, reducing agent is NAD
Where does the energy for the reaction catalysed by pyruvate kinase come from? What does the reaction need?
Replacing C=O and C=O to 2 x C=O, needs pyruvate kinase, Mg2+ and K+
What is a summary of glycolysis?
glucose + 2Pi + 2ADP + 2NAD > 2 pyruvate + 2ATP + 2NADH + 2H+ + 2H2O
What is the usual conc of lactate? Above what conc do you get hyperlactaemia?
1mM, 5mM
Why do you get hyperlactaemia?
Buffering capacity overpowered
How much ATP is produced in the liver? What does it produce instead?
Little, net producer of glucose
What is hexokinase inhibited by? Does this affect glucokinase?
G6P, no
What is a substrate and allosteric inhibitor of PFK-1? What assists with this?
ATP, citrate
What is inhibited in the inactive state of PFK-1? What overcomes this?
Glycolysis, AMP
Where is PFK-2 found? WHich hormone controls it?
Muscle, insulin and glucagon
What does the futile cycle between F6P and F-1,6-BisP control?
Balance between glycolysis and gluconeogenesis
WHat maintains the futile cycle between F6P and F-1,6-BisP in muscle?
AMP
WHat maintains the futile cycle between F6P and F-1,6-BisP in the liver?
F-2,6-BisP
Why does glucagon cause gluconeogenesis in the liver?
Decrease in F-2,6-BisP
What does fructose-1,6-bisP stimulate?
Pyruvate kinase
Why is glucose stored as glycogen?
Glucose would cause high osmotic potential which would damage cells and also avoids glycosylation of proteins
What is one end of glycogen joined to?
Glycogenin
WHy is UDP good?
Good leaving group
Why is UTP needed?
G1P not a powerful enough glucose donor for G-G bond so needs energy from UTP
Why glycogen enzymes are active during exercise?
Phosphorylase active, synthase inactive
What activates protein kinase A?
cAMP
How does PKA activate glycogen phosphorylase?
Activates phosphorylase kinase which activates glycogen phosphorylase
Which enzyme inactivates glycogen phosphorylase?
Protein phosphatase
What activates phosphorylase kinase for normal muscle action?
Ca2+ and also 5’AMP
What happens to glycogen phosphorylase once fed?
cAMP goes to 5’AMP and protein phosphatase deactivates it
How does insulin affect glycogen synthase?
Inhibits GSK3 so glycogen synthase no longer inhibited
What are the three irreversible reactions in glycolysis?
Glucose to G6P, F6P to F-1,6-BisP, and PEP to pyruvate
How many ATP does pyrivate kinase forwards produce?
1
How many ATP does pyruvate to PEP produce?
Two
What does increased AMP cause in muscle?
Increased glycolysis
What increases glycolysis and decreases gluconeogenesis in the liver?
F-2,6-BisP
What controls PFK-2 in cardiac muscle and liver?
Adrenaline in cardiac muscle, glucagon and insulin in liver
What regulates PFK-2 in skeletal muscle?
No hormonal control, regulated by F6P availability
How much glucose is produced from fat?
None
How does pyruvate get into the matrix?
Symported with a proton
How many NADH, FADH2, GTP and CO2 per Krebs turn?
3NADH, 1FADH2, GTP, 2CO2
Which TCA intermediates are symmetrical?
Fumarate and succinate
What is link reaction coupled to?
Losing CO2 means acetyl CoA is generated
What does lipoamide do?
Flexible arm, tethers acetyl group between two sites and moves reducing potential to a third site
Where is succinate dehydrogenase?
Inner mitochondrial membrane
What takes place in the cytosol?
Glycolysis, pentose phosphate, FA synthesis
What takes place in the mitochondria?
Krebs, beta oxidation, ETC
How much oxaloacetate is usually in the cell?
Small amounts
Why is an anapleurotic pathway needed?
If you keep removing compounds you lose carbon so need a pathway with intermediates
How many ATP from NADH?
2.5
How many ATP from FADH2?
1.5
In cytosol what is ratio of [NAD]:[NADH]?
1000
In mitochondrion what is ratio of [NAD]:[NADH]?
8
What does PDH phosphatase deficiency cause?
Lactic acidosis
What does the PDH complex contain?
PDH kinase and PDH phosphatase
What do PDH kinase and PDH phosphatase do?
PDH kinase deactivates PDH and PDH phosphatase activates it
What inhibits PDH kinase?
Inhibited by pyruvate
What activates PDH phosphatase?
Ca2+ for exercise and insulin in adipocytes for lipid synthesis
What else regulates PDH?
What inhibits isocitrate dehydrogenase?
The NADH/NAD ratio found in the fed state and ATP
What stimulates isocitrate DH?
ADP
What stimulates and inhibits alphaKG DH?
Inhibited by its own products, stimulated by Ca2+
What is limiting when there’s lots of acetyl CoA?
Oxaloacetate
What does the purine nucleotide cycle do?
ATP breakdown can produce fumarate to produce more oxaloacetate
What do purine nucelotide cycle deficiencies cause?
Muscle cramps
How can you measure the Krebs cycle?
Oxygen or carbon “chase the label”
How can you use fMRI in the Krebs cycle?
Deoxyhaem is paramagentic and haem is diamagnetic so alters signal
What converts triacylglycerols/triglycerides into glycerol and fatty acids?
Lipases
What activates lipases?
Phosphorylation by PKA
What activates protein kinase?
cAMP from glucagon, adrenaline, noradrenaline
What breaks down the cAMP which activates protein kinase? How?
Insulin, activates phosphodiesterase
What does beta oxidation do?
COnverts aliphatic fat to acetyl CoA units
What happens to the fatty acids to make acyl-CoA?
Activated by CoA