Lecture Set 3 : Part 5 Flashcards

1
Q

what are the effects of pH on microbial growth?

A

-the pH of an environment will greatly affect microbial growth
-most organisms in our lab grow best between a pH of 5.5 and 8
-some organisms have evolved to grow best at a low or high pH

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2
Q

what do we call the organisms that grow best at a pH between 5.5 and 9?

A

-neutrophiles

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3
Q

what do we call organisms that grow best at a pH of 5.5 or lower?

A

-acidophiles
-relatively common

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4
Q

what do we call organisms that grow best at a pH of 8 or higher?

A

-alkaliphiles
-less common because there are few naturally basic environments

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5
Q

what do acidophiles have?

A

-cytoplasmic membranes that require high external H+ concentrations for stability

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6
Q

what problem do alkaliphiles have?

A

-have a problem with maintaining a H+ gradient when the environment is rich in OH- ions
-the H+ ions that are pumped out of the cell immediately react with OH- to form water, so the cell cannot use them to generate energy

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7
Q

how do alkaliphiles solve their problem?

A

-place a reliance on a sodium motive force (Na+ gradient)
-works in place of H+ because Na+ is another positive ion with a +1 charge

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8
Q

what are the aspects of the cytoplasmic membrane that remain the same despite the different pH preferences of organisms?

A

-cytoplasmic pH is maintained near neutrality
-has very low permeability to H+ and OH-

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9
Q

what is the importance of buffers in media?

A

-help to maintain a constant pH
-each organism has its own optimal pH for growth
-some bacteria can produce acids that decrease pH
-some bacteria release ammonia which increases pH

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10
Q

what are acids that bacteria can release causing pH to decrease? how does bacteria produce these acids?

A

-acetic acid
-lactic acid
-sulfuric acid
-produced by fermentation (sugars are converted into acid end products)

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11
Q

what bacteria release ammonia?

A

-urease producing bacteria
-break urea into NH3 and CO2

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12
Q

what are non-halophiles?

A

-bacteria that grow best at low salt concentrations
-less than 1% NaCl (best growing conditions)
-cytoplasm has a higher solute concentration than surroundings (water will move in)
-water moving in produces turgor pressure

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13
Q

what are halotolerant bacteria?

A

-bacteria that can tolerate some reduction in water activity of the environment but still grow best at lower salt concentrations

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14
Q

what is an example of a halotolerant bacteria?

A

-staphylococcus aureus
-lives on human skin
-can tolerate up to 17.5% NaCl (doesnt grow at this concentration)
-is an opportunistic pathogen

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15
Q

what are halophiles?

A

-grow best at reduced water potential
-have a very specific requirement for NaCl
-many marine microbes

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16
Q

what are extreme halophiles?

A

-requires high levels of NaCl for growth (15%-30%)
-ex: microbes from great salt lake or the dead sea

17
Q

how do cells typically combat high environmental solute concentrations?

A

-by accumulating compatible solutes in the cytoplasm
-done with solutes that dont interfere with metabolism
-results in a net inflow of water (for turgor pressure)

18
Q

what are the most common compatible solutes?

A

-amino acids (proline, glutamate) = most bacteria
-sugars (sucrose, trehalose) = cyanobacteria
-alcohols (glycerol, mannitol) = eukaryotes
-salts (KCl) = extremely halophilic archaea

19
Q

what are obligate aerobes?

A

-require oxygen for metabolism (aerobic respiration)

20
Q

what are strict anaerobes?

A

-do not require oxygen and may even be killed by it

21
Q

what are facultative anaerobes?

A

-can live with or without oxygen
-will use it for respiration when it is available as it is more efficient

22
Q

what are aerotolerant anaerobes?

A

-can tolerate oxygen and grow in its presence but dont use it for anything

23
Q

what are microaerophiles?

A

-require oxygen in small amounts
-cannot tolerate regular atmosphere levels of oxygen

24
Q

what is the thiogylcolate broth experiment used for?

A

-used to demonstrate oxygen response by different bacteria

25
how does the thioglycolate broth experiment work?
-thioglycolate reacts with oxygen in a way where oxygen can only penetrate the top of the tube -an oxygen indicator turns pink in the presence of oxygen and colourless when oxygen is low or absent (pink at top, colourless in the rest)
26
where do obligate aerobes grow in the thioglycolate tube?
-only in the oxic zone at the top of the tube
27
where do facultative anaerobes grow in the thioglycolate tube?
-grow throughout the tube but better growth occurs in the oxic zone because they prefer to use oxygen for aerobic respiration
28
where do obligate anaerobes grow in the thioglycolate tube?
-grow only in the anoxic zone at the bottom of the tube
29
where do microaerophiles grow in the thioglycolate tube?
-grow in a narrow band between the oxic and anoxic zones -need oxygen for respiration but cannot grow too close to the top (killed by atmosphere oxygen levels)
30
where do aerotolerant anaerobes grow in the thioglycolate tube?
-grow evenly throughout the tube because they dont need oxygen and are not harmed by it
31
what organisms cannot be grown in our lab?
-obligate anaerobes -microaerophiles
32
what techniques are used to grow strict anaerobes?
-reducing agents (chemicals added to culture media to reduce oxygen) -removal of air and replacement with an inert gas (nitrogen)
33
what are examples of reducing agents?
-thiglycolate -cysteine -H2S
34
what are apparatuses that remove air?
-anaerobic jar -anaerobic glove box
35
why is oxygen harmful to some microbes?
-there are many toxic forms of oxygen that can form spontaneously in the cell as byproducts of other cell processes -ex: superoxide anion (O2-), hydrogen peroxide (H2O2), hydroxyl radical (OH big dot)
36
how do cells protect themselves from the harmful forms of oxygen?
-enzymes can be used to neutralize the most toxic forms (superoxide and hydrogen peroxide) -aerobes and facultative anaerobes use superoxide dismutase (SOD) and catalase respectively -aerotolerant anaerobes typically have SOD, but use peroxidase instead to deal with H2O2 because they lack catalase -strict anaerobes generally lack SOD and catalase (why they are so senstive), but some may use superoxide reductase -microaerophiles normally have low levels of SOD and catalase, and they will use oxygen for respiration on their cytoplasmic membrane before it has a chance to enter the cell