Lecture--Chapter 18 Flashcards

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1
Q

Gene mutations have both good and bad aspects. What are they?

A
  1. They allow variation in gene alleles and are essential for evolutionary change.
  2. Most mutations are harmful.
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2
Q

a group of processes by which a cell identifies and corrects damage to its DNA

A

DNA repair

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3
Q

Human cells have approximately how many molecular lesions per cell every day?

A

~1 million

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4
Q

relatively small changes in DNA sequence

A

gene mutations

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5
Q

What are the different types of gene mutations?

A
  1. Base substitutions
  2. Deletions or additions of one or more basepair
  3. Spontaneous or induced biochemical changes
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6
Q

What are the different types of base substitutions?

A
  1. point mutations
  2. transition mutations
  3. transversion mutations
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7
Q

a change in a single basepair

A

point mutation

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8
Q

a change of one purine (pyrimidine) to another purine (pyrimidine)

A

transition mutation

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9
Q

exchange of a purine and a pyrimidine

A

transversion mutation

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10
Q

A silent base substitution has how many amino acids altered and what is the likely effect on protein function?

A

none; none

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11
Q

A missense base substitution has how many amino acids altered and what is the likely effect on protein function?

A

one; neutral or inhibitory

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12
Q

A nonsense base substitution has how many amino acids altered and what is the likely effect on protein function?

A

many; inhibitory

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13
Q

A frameshift addition or deletion has how many amino acids altered and what is the likely effect on protein function?

A

many; inhibitory

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14
Q

a hereditary blood disorder for homozygotes, characterised by RBCs that have an abnormal, rigid, sickle shape

A

sickle cell disease

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15
Q

Heterozygotes for sickle cell disease have some protection against which disease?

A

malaria

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16
Q

Gene mutation of the promoter sequence may have what effect?

A

May increase or decrease the rate of transcription.

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17
Q

Gene mutation of the regulatory element/operator site sequence may have what effect?

A

May disrupt the ability of the gene to be properly regulated.

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18
Q

Gene mutation of the 5’-UTR/3’-UTR sequence may have what effect?

A

May alter the ability of mRNA to be translated; may alter mRNA stability.

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19
Q

Gene mutation of the splice recognition sequence may have what effect?

A

May alter the ability of pre-mRNA to be properly spliced.

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20
Q

Mutation effects at the genotype level:

A
  1. Wildtype (WT) allele
  2. Mutant allele
  3. Revertant allele
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21
Q

Mutation effects at the phenotype level:

A
  1. Deleterious mutation
  2. Lethal allele
  3. Beneficial allele
  4. Conditional mutants
  5. Suppressor mutations
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22
Q

a relatively prevalent allele in a population

A

wildtype (WT) allele

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23
Q

derived from a WT allele, relatively rare occurrence

A

mutant allele

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24
Q

a mutant allele changed back to a WT allele

A

revertant allele

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25
Q

decreases chance of survival and reproduction

A

deleterious mutation

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26
Q

results in death of the organism

A

lethal allele

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27
Q

improves individual survival and reproduction

A

beneficial allele

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28
Q

the phenotype is apparent under limited situations

A

conditional mutants

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29
Q

second site mutations that convert the mutant phenotype to a WT phenotype

A

suppressor mutations

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30
Q

Examples of suppressor mutations:

A
  1. intragenic
  2. intergenic (redundant function)
  3. intergenic (common pathway)
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31
Q

A 1st mutation disrupts normal protein function. A suppressor mutation in the same protein restores function. This is known as:

A

intragenic

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32
Q

A 2nd mutation alters a different protein to carry out that function. (gain of new enzyme function) This is known as:

A

intergenic (redundant function)

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33
Q

A 2nd mutation in a downstream pathway protein may compensate for a defect in an upstream pathway protein. This is known as:

A

intergenic (common pathway)

34
Q

changes in gene expression due to chromosomal rearrangements

A

position effects

35
Q

What are the two different movements of position effects?

A
  1. Movement to a location influenced by new regulatory sequences.
  2. Movement between euchromatic regions and heterochromatic regions.
36
Q

all progeny cells carry the change in DNA

A

germ-line mutation

37
Q

a non-heritable change in DNA

A

somatic mutation

38
Q

often occurs early in embryonic development or later from environmental mutagens

A

somatic mutation (genetic mosaic)

39
Q

an organism can pass on characteristics that it acquired during its lifetime to its offspring (Lamarck)

A

physiological adaptation hypothesis

40
Q

mutations occur in a non-purposeful fashion

A

random event hypothesis

41
Q

What are the different common spontaneous causes of mutations?

A
  1. aberrant recombination
  2. aberrant segregation
  3. errors in DNA replication
  4. transposable elements
  5. depurination
  6. deamination
  7. tautomeric shifts
  8. toxic metabolic products
42
Q

What are the different common induced causes of mutations?

A
  1. chemical agents

2. physical agents

43
Q

abnormal crossing over may cause deletions, duplications, translocations, and inversions

A

aberrant recombination

44
Q

abnormal chromosomal segregation may cause aneuploidy or polyploidy

A

aberrant segregation

45
Q

a mistake by DNA polymerase may cause a point mutation

A

errors in DNA replication

46
Q

can insert themselves into the sequence of a gene

A

transposable elements

47
Q

on rare occasions, the linkage between complementary purines and deoxyribose can spontaneously break. If not repairs, it can lead to a mutation

A

depurination

48
Q

cytosine and 5-methylcytosine can spontaneously create uracil or thymine

A

deamination

49
Q

spontaneous changes in base structure can cause mutations if they occur immediately prior to DNA replication

A

tautomeric shifts

50
Q

the products of normal metabolic processes, such as reactive oxygen species, may be chemically reactive agents that can alter the structure of DNA

A

toxic metabolic products

51
Q

chemical substances may cause changes in the structure of DNA

A

chemical agents

52
Q

physical phenomena such as UV light and X-rays can damage the DNA

A

physical agents

53
Q

a deamination that is generally fixed by excision repair

A

cytosine deamination

54
Q

a deamination that is not readily repaired

A

methylcytosine deamination

55
Q

Bisulfite (HSO3-) induced cytosine deamination is used in _____.

A

DNA sequencing

56
Q

isomers of molecules that readily interconvert by the migration of a hydrogen atom, with a switch of a single bond and an adjacent double bond

A

tautomers

57
Q

Tautomeric shifts can cause ____.

A

mutations

58
Q

Tautomeric shift mismatches often are repaired by ______ or _______.

A
  1. DNA proofreading activity

2. a mismatch repair system

59
Q

deaminates C to U and A to hypoxanthine, which alters base pairing during DNA replication

A

nitrous acid (HNO2)

60
Q

formed readily from sodium nitrate (HNO3-)

A

nitrous acid (HNO2)

61
Q

a mutagenic and possibly carcinogenic organic compound

A

ethyl methanesulfonate (EMS)

62
Q

produces random mutations in genetic material by nucleotide subsitution, which typically results in point mutations (GC to AT):

A

ethyl methanesulfonate (EMS)

63
Q

What are the steps of the common treatment to obtain plant mutants?

A
  1. Soak seeds in EMS for about 1 day.
  2. Grow your plants
  3. Isolate DNA
  4. Do a PCR and sequencing screen
64
Q

UV light is a non-ionising radiation that produces _____. It is the primary cause of _____.

A

thymine dimers; skin cancer

65
Q

skin cancer is repaired in some organisms by:

A

photoreactivation

66
Q

the likelihood that a given gene will be mutated

A

mutation rate

67
Q

Most people have how many mutations in their DNA during their life?

A

100-200

68
Q

What are the common types of DNA repair systems?

A
  1. direct repair
  2. base excision repair and nucleotide excision repair
  3. mismatch repair
  4. homologous recombination repair
  5. nonhomologous end joining
69
Q

an enzyme recognises an incorrect alteration in DNA structure and directly converts it back to a correct structure

A

direct repair

70
Q

an abnormal base or nucleotide is first recognised and removed from the DNA, and a segment of DNA in this region is excised, and then the complementary DNA strand is used as a template to synthesis a normal DNA strand

A

base excision repair and nucleotide excision repair

71
Q

similar to excision repair except that the DNA defect is a base pair mismatch in the DNA, not an abnormal nucleotide, The mismatch is recognised, and a segment of DNA in this region is removed. The parental strand is used to synthesise a normal daughter strand of DNA

A

mismatch repair

72
Q

Occurs at double-strand breaks or when DNA damage causes a gap in synthesis during DNA replication. The strands of a normal sister chromatid are used to repair a damaged sister chromatid.

A

homologous recombination repair

73
Q

Occurs at double-strand breaks. The broken ends are recognised by proteins that keep the ends together; the broken ends are eventually rejoined.

A

nonhomologous end joining

74
Q

a light-dependent direct repair process

A

photoreactivation

75
Q

enzyme made by bacteria, fungi, most plants and some animals that cleaves thymine dimers

A

photolyase

76
Q

used by humans to fix thymine dimers

A

nucleotide excision repair

77
Q

also an in vitro technique to label DNA for hybridisation assays (DNAse, Pol I and labeled dNTPs, ligate)

A

nick translation

78
Q

recognises an abnormal base and cleaves the bond between the base and the sugar

A

N-glycosylase

79
Q

recognises a missing base and cleaves the DNA backbone on the 5’ side of the missing base

A

AP endonuclease

80
Q

In E. coli, _____ uses its 5’—>3’ exonuclease activity to remove the damaged region and then fills in the region with normal DNA. _____ seals the region.

A

DNA polymerase I; DNA ligase

81
Q

repair by direct ligation of chromosome ends without using a homologous template

A

non-homologous end joining