Lecture 2 Flashcards

1
Q

Where is the clock

A

Suprachiasmatic nuclei

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2
Q

How many neurons does SCN contain

A

10,000

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3
Q

Where are SCN found

A

Above optic chisma at base of 3rd ventricle

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4
Q

How was SCN discovred at key

A

Lesioned the area, and it abolished rhythms in running, drinking and corticosterone

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5
Q

Eye to SCN path

A

Retino-hypothalamic tract

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6
Q

Experiements that proved clock

A

Martin Ralph used a short period mutant hamster transplants
Herzog and Block cultured a SCN brain slice andshowed its rhythmic electrical activity
Welsh and Reppert showed that mist neruons in SCN contained a clock

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7
Q

Ralph experiment

A

Took WT SCN cellls and transplanted them into mutant short period. Mutant then adopted donors rhythm

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8
Q

Herzog and Block experiment

A

Multi-electrode plate chip was cultured with SCN neurons and showed they have rhythmic activity

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9
Q

Welsh and Reppert experiment

A

Single neruons were dispersed on a MEP and showed that they had rhythmic actiivty

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10
Q

How are SCN cells coupled to each other

A

Gap junctions. When excitation was placed in one cell, spread to the other. Keeps the clock synchonised

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11
Q

What gap junction proteins are expressed in the SCN

A

Connexins Cx32 and Cx36

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12
Q

How was ‘clock’ gene found

A

Takahashi did a large mutant screen in mice and found clock gene, then cloned it 4 year later

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13
Q

What mutation was shown in clock

A

A to T cause exon 19 to be spliced out. this removes large glutamine regions which are important for transcription. This makes it a weaker transcriptional activator.

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14
Q

Clock gene details

A

Expressed in SCN
Has a bHLH-PAS domain transcription factor
PAS domain in involved in protein protein interactions

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15
Q

How was it know that clock needed a partner

A

bHLH domains normally act as dimers

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16
Q

How was clock partner found

A

Using a yeast two hybrid protein interaction screen.

17
Q

What is the clock partner

A

BMAL1

18
Q

How was BMAL1 shown to be relevant

A

Knockout studies by Bradfields group

19
Q

How was per gene found

A

Know since 1984 about per in drosophhila, then it was clones 14 years later. 3 versions, mper 1,2,3

20
Q

mPER structure

A

Two PAS domains

Oscillate in the SCN

21
Q

Effects of mPER ko

A

mPER1 KO shows s short clock period
mPER 1 and 2 KO disrupt the clock
mPER 3 KO does not effect the clock

22
Q

How was cryptochrome 1 and 2 discovered

A

Homologous recombination of two mouse knockout genes. Pure luck. Double KO showed animals to be arrhythmic

23
Q

How was the tau hamster mutant protein found

A

Syntenic cloning and genetically directed representational difference analysis

24
Q

How does syntenic cloning work§

A

Take the WT and mutant, and do a subtractive hybridisation to find regions of different DNA. Then map these regions to a human

25
Q

Tau mutant gene in hamsters was

A

Casein kinase 1 epsilon. Mutation cause a decrease in the amplitude of mper1 RNA oscillations

26
Q

Summary of how the following were discovered

Clock
Tau
mper
cry1/2
bmal1
A
Clock - mutant screen
Tau - mutation analysis
mper cloned from drosphilla
cry1/2 by knockout study
bmal1 yeast two hybrid protein interaction screen
27
Q

Clock negative feedback loop

A

Clock gene
Cloc transcript - RNA
Clock protein, which then inhibits the clock gene

28
Q

Zeitgeber

A

External stimulus that sets a rhythm. In human clock, light is the zeitgeber and the changes in frequencies at dusk and dawn

29
Q

Circadian photoreception features

A

Sums light infomation over entire visual field
Insensitive to dim light
Insensitive to short durations of light
Sums light infomation over many minutes

30
Q

What is irradiance

A

Sums light over a entire visual field

31
Q

Can conless and rodless still entrain clock

A

Yes

32
Q

How was it worked out which cells are photosensitive to train clock

A

Injection of rabies virus which were photolabelled, and saw which cells tracted to the SCN

33
Q

What cells set the clock

A

Photosensitive retinal ganglion cells

34
Q

What wavelength do the cells respond best to

A

480nm. Blue light. Shows the biggest phase shift on action spectroscopy graph