Lecture 14 - Peroxisomes, Mitochondria, Chloroplasts & Nucleus Flashcards

1
Q

_____ _______ _______ allows polypeptide to enter organelles after they’ve been synthesized

A

post-translational import

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2
Q

where are proteins destined for peroxisome, mitcohondrion, chloroplast or nuclear interior synthesized?

A

on free ribosomes and released into the cytosol

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3
Q

in the rough ER, proteins that are imported by organelles need what?

A
  1. a sorting signal (amino acid sequence)
  2. a receptor (recognizes the sorting signal, and transports the protein to the membrane)
  3. a membrane transporter (facilitates passaged into the organelle, through the bilayer
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4
Q

def: spherical organelles, defining characteristic is the presence of catalase, H2O2 metabolism

A

perioxisome

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5
Q

what are the essential roles of peroxisomes?

A
  1. H2O2 metabolism
  2. detoxification of harmful compounds
  3. oxidation of fatty acids
  4. metabolism of nitrogen-containing compounds
  5. catabolism of unusual substances
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6
Q

def: enzymes that degrade H2O2 into water and oxygen

A

catalases

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7
Q

def: enzymes that oxidize organic substances and produce H2O2 in the process

A

oxidases

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8
Q

membrane lipids are either synthesized by ________ ______ or transported there by ______ _____ ______

A

peroxisomal enzymes, lipid transfer proteins

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9
Q

where are most peroxisomal proteins are synthesized and then translated?

A

on free cytosolic ribosomes, the post-translationally imported via a C-terminal peroxisomal target signal (PTS-1)

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10
Q

def: in mitochondria, contains porins, which allow free movement of small molecules and ions across the outer membrane

A

outer membrane

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11
Q

def: in mitochondria, acts as a permeability barrier to most solutes

A

inner membrane

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12
Q

def: within the inner membrane; contains most of the enzymes associated with mitochondria function, in addition to DNA and ribosomes

A

matrix

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13
Q

def: area between the outer and inner membranes

A

inter membrane space

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14
Q

def: localized regions where protons can accumulate during the electron transport process

A

intracistal space

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15
Q

where are most mitochondrial and polypeptides synthesized

A

on cytoplasmic ribosome

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16
Q

what kind of molecules can pass through the porins in the outer membrane of mitochondria?

A

ATP, ADP
CoA, NAD
ions

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17
Q

what is the DNA composition of mitochondrial proteins?

A

99% nuclear genes
1% mitochondrial genome

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18
Q

where are most of the mitochondrial proteins found?

A

mitochondrial matrix or inner mitochondrial membrane

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19
Q

what state are the proteins that enter the mitochondria

A

unfolded state and contain a pre sequence or “internal targeting sequence”

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20
Q

where does translocation occur simultaneously in the mitochondria?

A

where the inner and outer membrane are close together

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21
Q

what are TOMs

A

Translocase of the Outer Mitochondrial Membrane

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22
Q

what are TIMs

A

Translocase of the Inner Mitochondrial Membrane

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23
Q

how are cytosolic proteins kept in an unfolded state?

A

bound by molecular chaperones

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24
Q

__________ encoded by an N-terminal alpha-helix binds the receptor component of ____ on the outer mitochondria membrane, and is positioned into the TOM channel on the outer mitochondrial membrane

A

“presequences”, TOM

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25
Q

what happens during transport of proteins destined for the matrix?

A

TOM and TIM23 channels are brought together

26
Q

what powers the movement into the matrix for mitochondrial matrix proteins?

A

electrical potential

27
Q

what are the 2 hypothesis for how mitochondrial proteins are pulled into the matrix?

A
  1. chaperones, using ATP hydrolysis
  2. random diffusion allowing the peptide to poke the N-terminus through the channel
28
Q

what happens once the protein is brough into the mitochondrial matrix?

A

pre sequence is cleaved by peptidase and the protein folds into its native conformation

29
Q

what happens during transport of proteins destined for the inner membrane of the mitochondria?

A

TOM and TIM22 channels are brought together

30
Q

what signals the TIM22 channel to allow the protein to pass into the lipid bilayer

A

the internal targeting sequence

31
Q

chloroplasts are the site of __________

A

photosynthesis

32
Q

chloroplasts are surrounded by which membranes?

A

inner and outer

33
Q

def: system of flattened membranous sacs founding chloroplasts

A

thylakoids

34
Q

def: stacks of thylakoids

A

grana

35
Q

the _______ contains a larger circular genome in chloroplasts

A

stroma

36
Q

all chloroplast proteins have a _____ ________ _________ which is removed by a peptidase upon transport

A

stroma targeting domain

37
Q

a ____________ __________ __________ is needed for entry into the thylakoid though some thylakoid membranes proteins are _______ __________ __________

A

thylakoid transfer domain, co-translationally inserted

38
Q

where are enzymes and proteins needed in the nucleus imported from?

A

the cytoplasm

39
Q

where are messenger RNA and ribosome components needed in the cytoplasm exported from?

A

the nucleus

40
Q

what are the 2 membranes of the nuclear envelope?

A
  1. the inner membrane defines the nucleus
  2. the outer membrane is contiguous with the ER
41
Q

def: fuse the two membranes of the nucleus and serve as a conduit for transport between the cytoplasm and nucleoplasm

A

nuclear pores

42
Q

what travels through nuclear pores from the cytosol to the nucleus?

A
  • histones
  • DNA and RNA polymerase
  • transcription factors
  • RNA processing proteins
  • ribosomal proteins
43
Q

what travels through nuclear pores from the nucleus to the cytosol?

A
  • tRNA
  • mRNA
  • RNP complexes
44
Q

nuclear pores are composed of ~30 different proteins called _________

A

nucleoporins

45
Q

def: the central granule in a nuclear pore, likely involved in moving molecules across the nuclear envelope

A

transporter

46
Q

do NPC allow passive transport of particles?

A

yes, if they are smaller than 10 nm in diameter, they can pass through aqueous diffusion channels that particles can move freely within

47
Q

def: enable proteins to be recognized and transported by nuclear pore complex

A

nuclear localization signals(NLS) and nuclear export signals(NES)

48
Q

what is the composition of an NLS?

A
  • 8-30 amino acids
  • contains proline and positively-charged amino acids (arginine and lysine)
49
Q

def: regulates nuclear import/export

A

Ran

50
Q

def: mediate the tethering of transport vesicles to target membranes

A

Rab

51
Q

def: crucial for assembling coat proteins during vesicle formation

A

ARF

52
Q

def: linked to G-protein coupled receptors, can influence cell cycle, well-characterized oncogene

A

Ras

53
Q

def: actin binding protein regulator

A

Rho

54
Q

where does the energy needed to import proteins through nuclear pores come from?

A

hydrolysis of GTP by the GTPase Ran

55
Q

where is Ran found?

A

in the nucleus and cytoplasm

56
Q

what form is GTP found in the cytoplasm?

A

GDP-bound because the Ran-GAP is localized in the cytoplasm

57
Q

why is GTP-bound form found in the nucleus?

A

presence of Ran-GEF

58
Q

what does the importin do to the cytoplasmic protein when it binds to the NLS?

A

it mediates the movement of the protein towards a nuclear pore

59
Q

once the importing-protein complex has docked with the NPC and transported into the nucleus, how does the protein get released?

A

the importin associates with a GTP-binding protein RAN, causing release

60
Q

where does the GTP-Ran-importin complex go after release?

A

travels back to the cytoplasm through an NPC and is released as GTP is hydrolyzed

61
Q

adaptor proteins also involved in RNA export have _______ _______ _______

A

nuclear export signal sequences