Lab Midterm Flashcards
Examples of eukaryotic microbes
fungi, algae, and protozoa
Mixture of nutrients in which a microorganism can grown
medium/media
Comes from red algae.
Melts at 100 C
Solidifies at 40 C
agar
medium that has known amounts of chemicals
defined medium
medium that has chemically undefined components such as yeast extract or peptone
complex medium
killing or removal of all living organisms from a medium
sterilization
Sterilization technique for media and glass
Autoclave at 121 degrees C
Sterilization technique for loops and glass
Dry heat: flaming, hot air
Sterilization for heat sensitive liquids like antibiotics
filtration
sterilization for surfaces
Radiation: UV, gamma rays
Sterilization for heat sensitive materials such as ethylene oxide
cold sterilization
occur naturally on or in body, don’t cause infection under normal circumstances
Resident (normal) microbiota/flora
temporary on body, can’t grow on skin because too dry and acidic
Transient flora
hospital acquired infection
Nosocomial infection
number of microorganisms required to establish an infection
infectious dose
a group of genetically identical bacteria, arising from a single cell on an agar plate
colony
Three types of whole colony shape
round, irregular, rhizoid
Three types of margin shape
smooth/entire, lobate, filamentous
three types of elevation
convex, umbonate, flat
Common normal flora
Staphylococcus, Acinetobacter, Propionibacterium
Triclosan
liquid soaps
Triclocarban
bar soaps
antibacterial and anti fungal agents that disrupt the cell membrane synthesis
soaps
What do soaps really do?
gets rid of transient flora
colony characteristics
colony morphology
unwanted organism which has been accidentally introduced into the culture
contaminant
some examples of aseptic technique
washing hands, disinfecting benches, sterilizing inoculating loops
a culture that contains only one kind of microorganism
pure culture
technique for diluting bacteria on agar plates; can be used to isolate bacteria from a mixture
streak plate
Common streak plate mistakes
not flaming between quadrants, not letting the loop cool, going back to the previous quadrant too much/not enough
Colony morphology: off-white, semi translucent, round, smooth, produces a dark colony with a green metallic sheen on EMB plate
Escherichia coli
Colony morphology: white, opaque, and small
Staphylococcus epidermis
makes cells more visible by adding contrast between cells and background
staining
1st step in staining cells, can be made from solid or liquid culture
smear
kills microorganisms and sticks them to slide to allow for easier visualization and staining
heat fixation
a result of staining, allows for visualization of cells
contrast
aqueous or alcohol solution of a single basic dye; highlights entire cells, stains every cell the same
Simple stain
shape of cell, visible only under magnification of microscope
morphology
arrangement of pairs of cocci
diplococcus
arrangement of cocci in random or grape like structures
staphylococcus
chain of cocci or bacilli
streptobacillus/streptococcus
tetrad or cubical packets of cocci
micrococcus
spiral with an axial rod
spirochetes
incomplete spiral
vibrio
irregular or variable shaped cell
pleomorphic
Colony morphology: yellow and opaque, gram positive
Micrococcus luteus
staphylococci, gram positive
staphylococcus epidermis
small, random bacilli, peritrichous, gram negative,
escherichia coli
spiral, gram negative
spirosoma linguale
large, street bacilli, endospores make them resistant to UV
bacillus megaterium
streptococci
streptococcus mutans
curved rods, monotrichous
Vibrio natriegens
filamentous rods
streptomyces coelicolor
diplococci or tetrads, can quickly repair DNA damage caused by UV
deinococcus radiodurans
total magnification =
magnification of the ocular lens (10x) multiplied by the objective lens
if an objective lens is in focus, when you change to another objective it should remain relatively in focus
parfocal
concentrates light going to the stage
condenser
controls amount of light accessing the stage
iris diaphragm
the distance between 2 points at which the points can be seen as two separate, distinct entities
resolving power
maximum resolution of our compound light microscope
0.2 micrometers
reduces the amount of light scattered between the specimen and the object thereby increasing the resolution
immersion oil
move back and forth by dyne motor proteins; made of microtubules
flagella and cilia
there parts of a prokaryotic flagellum
filament
hook
motor - driven by proton or sodium motive force
flagella are attached at one or both ends of the cell; movement more rapid, spinning around from place to place
polar
flagella are inserted at many locations around the surface; movement typically slow and in a straight line
Ex. Proteus, Salmonella, Escherichia
peritrichous
one polar flagella
Ex. Vibrio, Pseudomonas
monotrichous
many flagella at one end
Ex. Rhodospirillum photometricum
lophotrichous
one flagella at each end
Ex. Spirillum
amphitrichous
What does motility test medium contain
0.4% agar, tetrazolium salt
bacteria will reduce the tetrazolium salt as they carry out metabolism; what does tetrazolium salt look like in these condition
red
peritrichous
proteus vulgaris
peritrichous
spirillum volutans
distinguishes cell types
differential stain
color of gram positive cells
blue/purple
color of gram negative cells
red
Steps in gram stain
- Crystal Violet - primary stain
- Iodine - mordant
- Ethanol - decolorizer (gram negative cells lose purple coloring)
- Safranin - counterstain
How does iodine work as a mordant?
chemically binds to the molecules of crystal violet
have a thick peptidoglycan layer; alcohol is unable to leach out the crystal violet-iodine complex
gram positive
alcohol penetrates lipopolysaccharide layer and the thin peptidoglycan layer does not prevent the alcohol from removing the crystal violet-iodine complex
gram negative
streptobacilli, gram positive
bacillus cereus
counts all cells using a hemocytometer
direct microscopic count
counts only living cells using either a spread plate or pour plate
standard plate count
can be correlated to viable cell count; spectrophotometer
turbidimetric assay
MPN coliform index of less than or equal to 2.2 coliform per 100 mL of water
potable water
what does the presence of coliforms indicate
fecal contamination
Aerobic or facultative aerobic; gram negative; do not form endospores; rod shaped; ferment lactose and produce gas
coliforms
non-pathogenic bacterium whose presence in water indicated fecal contamination
indicator organism
favors the growth of certain microbes and inhibits competitors
Selective medium
Ex - Laurel Sulfate Lactose (LSL) broth selects for gram negatie bacteria
visible indication of a physiological characteristic
Differential Medium
3 Tests of MPN technique
Presumptive, Confirmed, Completed
Presumptive Test Medium: Selective Component: Selects for: Differential Component
LSL broth Selective component: Lauryl Sulfate Selects for: intestinal bacteria Differential component: lactose intestinal bacteria that ferment lactose and produce gas in the Durham tube
Confirmed Test Medium: Selective Component: Selects for: Differential Component:
Brilliant Green Lactose Bile (BLGB) broth
Selective components: brilliant green & bile
Selects for: coliform
Differential component: lactose
Completed Test Medium: Selective Component: Selects for: Differential Component:
Eosin methylene blue (EMB) agar
Selective Components: eosin and methylene blue dyes
Selects for: Gram negative bacteria
Differential component: lactose
produces fish-eye colony on EMB plate
Enterobacter aerogenes
water will leave the cell resulting in plasmolysis
hypertonic solution
water will enter the cell until the cell can no longer take in water
hypotonic solution
there will be no net flow of water through the cell
isotonic solution
prefers no salt but can tolerate higher salt concentrations
halotolerant
Ex. Staphylococcus epidermis
grow best at high salt concentrations
halophile
Ex. Vibrio natrigenes
requires 15-30% salt
extreme halophile
Ex. Halo bacterium salinarium
pH at which the organism grows best
optimum pH
grow best at low pH
Acidophiles
grow best at pH close to 7 (most bacteria)
Neutrophiles
grow best at pH>7
Alkalinophiles
several pH units at which the organism can grow
pH range
used to sterilize surfaces; 10-400nm; causes thymine dimers
UV
most damaging wavelength to nucleic acids
260nm
adjacent thymines covalently bond to each other resulting in mutations or death of cell
thymine dimers
grow best at high temperatures
thermophiles
grow best at the temperatures comfortable for humans
mesophiles
grow best as low temperatures
physchrophiles
What kind of stain is a capsule stain
background is stained but the capsule is not
Functions of a capsule
prevent desiccation reserve energy source attachment to host cell resists phagocytosis may enhance ability to cause disease
Procedure for a capsule stain
Drop of Congo Red - stains background
Mix of organism then let dry
Flood with Manival’s stain - stains cells
Why should you let the capsule stain air dry?
Heat fixing it would kill the cell and dry out the capsule which is mostly water