k? (L16) Flashcards

1
Q

Virus encounters can lead to various outcomes IN CELLS

A
Acute cytopathic infection
Persistent infection
Latent infection
Cell transformation
Abortive infection
Null infection
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2
Q

Virus encounters can lead to various outcomes IN ORGANISMS

A
Acute infection (disease)
Subclinical infection
Persistent and chronic infections
Latent infection
Slowly progressive disease
Virus-induced tumour
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3
Q

How do we define disease?

A

SYMPTOM:
Any subjective evidence of disease or of a patient’s condition, i.e. such evidence as perceived by the patient, a change in a patient’s condition indicative of some bodily or mental state (how ill you feel)

CLINICAL SIGN:
An objective physical finding found by the examiner.
- Infection may or may not result in overt disease. In the absence of observable disease, an infection is said to be subclinical or silent.
- An immune response measured in vitro may not correlate with recovery or protection

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4
Q

define Virus Virulence

A

Virulence is the capacity to cause disease.

Virulence among viruses is relative and varies from avirulent (no disease) to lethal.
Few viruses are 100% lethal. e.g. ‘virulent’ poliovirus causes paralysis in only 1% of infected individuals.
Different strains of a virus can vary in virulence

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5
Q

define attenuation

A

Attenuation is the reduction in the virulence of a virus

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6
Q

define pathogenicity

A

Pathogenicity is the ability of the virus to cause pathology: this can be microscopic or macroscopic.
Since avirulent viruses can be pathogenic the terms are not synonymous.
Pathogenicity has come to mean ‘ability to cause disease’
Virulence has come to mean ‘relative disease-causing capacity’

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7
Q

what does virulence depend on?

A

Virulence depends on a combination of viral and host factors:

Virus factors
strain/isolate - genetically determined
dose
route of infection

Host factors
species
genetic constitution e.g. MHC proteins expressed
age, sex, nutritional status

The virulence of a virus cannot be described without reference to the conditions of infection

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8
Q

The Iceberg Principle of Infection

A
TOP OF ICEBERG
Death of host
Classical and severe illness
Mild illness
Subclinical or silent infection
No infection
BOTTOM OF ICEBERG

this shows a spectrum

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9
Q

Immune Control of Virus Infections

A

DIAGRAM IN L16 S12

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10
Q

Regulation of virus infection by the immune system (IS)

A

The IS is made up of many different responses:

  • each is graded, not all or nothing
  • quality and quantity of responses vary among people

The IS is not homogeneous throughout the body:

  • e.g. CNS not subject to the full range of systemic IR until the blood-brain barrier is breached
  • e.g. mucosal IS comprises all mucosal surfaces, and is in many ways distinct from the systemic IS
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11
Q

Regulation of virus infection by the immune system (IS):

A

Multiple elements of the IS combine to control a virus infection

Often only one part of the IS is effective in combating a particular infection, even though all parts of the immune response are mounted:
— each virus infection may be combated by different responses

The target of the immune response can be the virion or the infected cell or both

Intracellular virus is beyond the reach of adaptive immunity, unless virus antigens are displayed on the cell surface

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12
Q

Network of antiviral immunity

A

LOOK AT L16 S15

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13
Q

INNATE IMMUNITY AND VIRUS INFECTION

A

TITLE

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14
Q

types of Interferons

A

Type 1 Interferons α and β:
closely related cellular proteins made in response to virus infection.
have antiviral activity
can upregulate expression of proteins that are antiviral
can upregulate the expression of MHC I proteins (builds adaptive response)

Type 2 Interferon γ:
a cellular protein made by activated T cells in response to their cognate antigen
is a cytokine
different in sequence from interferons α and β
has antiviral activity
can upregulate the expression of MHC I and II proteins

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15
Q

how are interferon responses elicited

A

STEPS

  1. induction
  2. priming an antiviral state
  3. antiviral action of ISGs
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16
Q

interferon response elicited - step 1 induction

A

Induction of a response begins with the recognition by a cell that a pathogen is around (bacteria or virus, outside or inside the cell). Detected by PAMPs
PAMPS non specific features of pathogens to distinguish between the host and pathogen (like ds rna)
Recognised by PRRS - a cell surface receptor
PAMPS recognised - initiate a signalling cascade
Orange arrow ends with the activation of NFkB (usually sits in the cytoplasm bound to an inhibitor, signalling causes the disruption of the inhibitor which allows the TF to go into the nucleus)
IRF3 and IRF7 get phosphorylated in response to a signalling cascade, and also goes to the nucleus
2 TFs bind to the promoter of the interferon of the B gene and activates it - this is how you produce interferons in response to a pathogen detected

Interferon alpha can be expressed when IRF7 is present

17
Q

interferon response elicited - step 2 priming an antiviral state

A

Generates an antiviral stage

Interferon is a cytokine so is secreted
Interacts with cells outside the cell using the cell surface receptor
Signalling cascade
Activates TF which ends up binding to the promoter of genes in nucleus
Allows transcriptional response to the interferon
(not only one gene, many ISGs - interferon stimulating genes)

Proteins encoded by ISGs are ready to counteract an infection once the cell is infected

18
Q

interferon response elicited - step 3 antiviral action of ISGs

A

They are virus specific and activated by the presence of viruses
PKR when it works, disrupts protein synthesis (bad for the cell so dies, but this saves the organism from more virus)
PKR is only activated when cell is infected, and virus produces ds rna
dsRNA activates the PKR, protein synthesis shuts down, cell dies, virus dies with it
Disruption of mRNA will lead to disruption of protein synthesis

19
Q

Apoptosis

A

ISGs include multiple pro-apoptotic factors
Antiviral state promotes apoptosis when virus is present

Alter the decision making balance between survival and apoptosis
Balance has to be tightly controlled (would lead to tissue damage otherwise)
Cell that is primed by interferons will be more inclined to go to apoptosis if it came into contact with a virus

20
Q

ADAPTIVE IMMUNITY AND VIRUS INFECTION

A

TITLE

21
Q

Antibodies and Viruses

A

Virus particles have the potential to stimulate antibodies to many different epitopes on their surface.
Crucial for mopping up virus in the system AND for providing memory protection against future infection
Can trigger complement-mediated killing of infected cells

Protein has enough diff epitopes to produce enough diff antibodies
Antibodies have a memory to minimise the outcome of an interaction with the same virus

22
Q

NEUTRALISING ANTIBODIES have a variety of effects on virus infectivity/infection

A
  1. By acting on free virus particles
    Aggregate virus particles together
    [[ Deplete the number of infection unit by aggregating them together into one unit
    (but here instead of blocking its ability to infect, we are reducing the number of infecting unit) ]]
  2. By acting on early virus-cell interactions
    Inhibit attachment of virus to cell receptors
    [[ Lock the essential events in the infectious process
    Blocks attachment of the virus to the cell ]]
  3. Inhibit endocytosis of the virus particle
  4. Inhibit virus uncoating and/or fusion
  5. Inhibit a post-entry step of infection
23
Q

difference between neutralising and non neutralising antibodies

A

Neutralizing antibodies: bind to virions and neutralize infectivity
Non-neutralizing antibodies: bind to virions, and either have no effect, or prevent binding of neutralizing antibodies

Not all antibodies are neutralising
Some epitopes elicit neutralising antibodies, some elicit non neutralising antibodies (even within the same antigen / protein)
Both are produced - neutralizing and non neutralizing
Non neutralising can get in the way. The surface of a viral particle can get loaded up with non neutralising antibodies, to prevent the neutralising antibodies from reaching the virus
Also prevents the neutralising antyibodies from being produced because the IS no longer sees the neutralising epitopes because they are blocked by the non neutralising epitopes AND VIRUS IS STILL INFECTOUS!

24
Q

positive and negative effects of antibodies

A

Neutralizing or non-neutralizing antibodies can bind virus or infected cells and
- activate complement
- act as ligands for Fc receptors on phagocytic cells

[[ Antibodies can get mopped up
Anything bound to any antibodies have an FC (common portion of the antibody sticking out and activating complements, and causing the antibody/antigen complexes to be taken up by phagocytic cells) ]]

Neutralizing or non-neutralizing antibodies can enhance infectivity – antibody-dependent enhancement e.g. dengue

Antibodies could be negative on the body
Dengue virus infection can be enhanced by the neutralising or non neutralising antibodies
Shows we can’t generalise

25
Q

Cytotoxic T cells and Viruses

A
Recognise antigenic peptides presented by MHC Class I
( Essentially all cell types express MHC class I )

Specificity determined by T cell receptor

Recognition can lead to:

  • Target cell death through delivery of perforin, granzyme
  • Inhibition of virus growth by local release of inhibitory cytokines (IFN-γ, TNF-α)

Essential for clearing (resolving) viral infection

A given virus will present different T cell epitopes in different individuals (outbred population)
( Some may be better at clearance than others )

26
Q

balance between virus, host and immune system

A

Immune responses are crucial but excessive responses can be harmful

It is in the interests of the virus to:

  • Antagonise the interferon response
  • Evade premature apoptosis
  • Generate non-neutralizing antibodies
  • Block presentation of viral peptides by the MHC proteins

Because:

  • It aids virus replication and transmission
  • Excessive responses can themselves be harmful to the host (which then harms virus replication / transmission)

Most (?all) viruses encode proteins that mitigate the IS response

27
Q

the 4 outcomes of infection

A

Extent of modulation of the virus-host interaction dictates the outcome of infection

  1. Virus dominates over IS: replication and spread, v likely disease
  2. IS dominates over virus: limited replication, little if any disease
  3. Extreme IS response: limited replication, v likely disease
  4. Balance of virus with IS: some replication and spread, maybe disease