elizabeth (L9-10) Flashcards

1
Q

slow growth

A

E coli can get at least 3 doublings per hour - highest here
Even fast growing mycobacterium only have 1 doubling per hour
Different conditions for them to grow, so need an enclosed space where the air is filtered
Research is very difficult because of this

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2
Q

small colony variants

A

Drug resistance sub population
Antibiotic resistance helps them survive
Mucus layer of polysaccharide allows it to grow over it

Staphylococcus are fast growing usually
They colonise somewhere like knee or joints (they form a biofilm and mutate, cause auxotrophy) they can still grow because they utilise dead cells and bacteria
Slow growing so very difficult to kill with antibiotics

(Columbia blood-agar plates that show the normal and the small colony variant phenotype of Staphylococcus aureus Implicated in nosocomial infections)

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3
Q

Antibiotics for treating infections with SCVs

A

antibiotics target processes required for growth; the biosynthesis of proteins, peptidoglycan, folic acid, DNA and RNA.

Biofilm-mediated infections and tuberculosis (TB) – unmet clinical need owing to bacteria that are either slow growing or dormant and therefore hard to treat

Once they are quiescent, their antibiotic resistance increases and are difficult to treat

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4
Q

Biofilm-mediated infections

A

Biofilm-mediated infections range from those
involving medical-device implants, including
bloodline catheters and heart implants, to
those associated with cystic fibrosis, wounds
and superficial skin infections

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5
Q

TB

A
TB is the most devastating bacterial infection of humans, causing ~2 million deaths per year. It is estimated that one-third of the world’s population is infected with asymptomatic, dormant M. tuberculosis, from which new cases of active 
infection arise (~8 million annually)
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6
Q

Antibiotics active against dormant bacteria

A

DAPTOMYCIN - used to treat cSSSI (complicated skin and skin structure infections)

MYCOBACTERIA DRUGS - to treat tuberculosis, drugs like CLOFAMIZINE, BEDAQUILINE, PRETOMANID

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7
Q

define ionophores

A

a substance which is able to transport particular ions across a lipid membrane in a cell.

chemical structures of various membrane
-active agents 
Molecules that perturb 
the membrane vary
greatly in size and 
chemical structure

these factors influence
the sum of the
interactions made in the complex membrane
environment, define
how rapidly these compounds act and determine whether they are bactericidal

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8
Q

common feature of all membrane-active agents

A

common feature of all membrane-active agents is their high lipophilic content, which enables them to interact with the hydrophobic
membrane.

With the exception of clofazimine, which kills latent mycobacteria, these compounds all have reported
anti-biofilm properties.

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9
Q

The intracellular parasite/pathogen

A

An intracellular location provides a survival niche for bacteria, because the micro- organisms are protected against antibiotic therapy and host defences.

S. AUREUS
S. aureus is not only an extracellular pathogen but also an intracellular pathogen, owing to effective uptake of these bacteria by non-professional phagocytes, such as endothelial and epithelial cells, fibroblasts, osteoblasts and keratinocytes.

SCV
svc internalisation is mediated by fibronectin bridging between the bacterial fibronectin-binding proteins (FnBPs)
and the receptor α5β1-integrin, which is present at the surface of eukaryotic cells

EXAMPLES
S aureus
Wolbachia bacteria
Brucella 
M. tuberculosis
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10
Q

infection by intracellular parasites

A

they enter macrophages, stay there and are transmitted to other cells or form
Dendritic cells and macrophages are infected and infectious
They subvert the immune response of the macrophage. The phagosomes inside the cell cannot digest them. (all mycobacteria can do that)
Other bacteria have intracellular growth - need resistance to hypoxia because of the free radical production in the phagosome and hydrogen peroxide

Difficult to treat
Go into stages of latency

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11
Q

leprosy caused by?

A

a slow growing pathogen
Mycobacterium leprae causal agent of leprosy

Leprosy only develops if you have been living with lepers for a very long time (difficult to catch)
BCG is the TB vaccine and gives immunity to leprosy

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12
Q

facts about leprosy

A

Leprosy, (or Hansen’s Disease), is a chronic infectious disease of the skin
and nerves.
The causal agent is Mycobacterium leprae.
Symptoms are
loss of sensation in hands and feet, leading to disability through injury,
and blindness

not really contagious but caught via close contact over an extended period and is mainly spread through droplets from the nose and mouth by coughing and sneezing. Also via skin particles in dust within housing of infected individuals can be inhaled and transmit the infection so there is a potential environmental reservoir

(( Leprosy is one of the oldest and most stigmatised of diseases. The stigma attached to leprosy which can result in rejection and exclusion means there is widespread misunderstanding about the disease ))

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13
Q

treatment of leprosy

A

Leprosy is curable through Multidrug Therapy (MDT). MDT is a combination of two or three drugs, clofazimine, rifampicin and dapsone which are administered over two years. MDT combined with early diagnosis also prevents permanent disabilities by curing the disease before it causes deformities.

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14
Q

cultivation of lepri and its current endemics

A

Leprosy is a chronic granulomatous disease affecting the skin and peripheral nerves

Cultivation of lepri - difficult organism to treat, and to screen for a drug therapy
Usually drug therapy is done on a live organism

Despite its being the first identified pathogen in humans, leprosy remains endemic in central Africa, Southeast Asia and South America with more than 200,000 new cases per year globally. Our understanding of its pathogenesis and interaction with the human host is limited, in part due to the inability to culture the bacterium in vitro.

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15
Q

mycobacterial cell wall features

A
(extracellular environment)
- capsule like material
- MAPc:
mycolic acids
AG (arabinan and galactan)
peptidoglycan
- cell membrane
(intracellular environment)

Unique cell wall - capsule like material of long chain fatty acids
20 carbon lengths, they are like candle wax
When cells grow, they aggregate together and makes it difficult to work with
Peptidoglycan is linked to mycolic acids with arabinogalactan polymers. The synthesis of these arabinogalactan polymers is a good target for drug therapy

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16
Q

ziehl neelsen stain

A

The ziehl neelsen stain was the first to use for diagnosis by staining a piece of skin (phenyl red will stain mycobacterial cell because of its impermeable membrane that will not allow the stain out)

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17
Q

The leprosy spectrum and possible mechanisms of tissue damage

A

LEARN DIAGRAMS IN L9 S14

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18
Q

Lepromatous leprosy is characterized by…?

A

Lepromatous leprosy is characterized by aTh2 T-cell immune response (interleukin-4 [IL-4] and IL-10), antibody complex formation, the absence of granulomas, and failure to restrain M. leprae growth. In lepromatous leprosy, robust antibody formation occurs but is not protective, and cell-mediated immunity is conspicuously absent

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19
Q

Tuberculoid leprosy is characterized by…?

A

tuberculoid leprosy features Th1 T-cell cytokine response (gamma interferon [IFN-] and IL-2), vigorous T-cell responses to M. leprae antigen, and containment of the infection in well-formed granulomas

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20
Q

M leprae

A

M. leprae is an obligate intracellular pathogen with a distinct tropism for Schwann cells of the peripheral nervous system and for macrophages

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21
Q

T helper cell 1 vs 2

A

If you establish a good defense, you can subvert the infection and the cellular base immunity will be able to deal with it
→ T helper cell 1 mediated resistance (tuberculoid pole)

If you have induction of T helper cell 2, then you are on the other end of the pole and you get a humoural response
Antibody response doesn’t work very well and they can’t bind to leprosy (because it is non immunogenic because of the wax) especially when it is intracellular
→ T helper cell 2 induction (leproid pole)

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22
Q

Tuberculoid pole

A

Tuberculoid pole - you get aggregation of macrophages and antibodies migrate there but are not effective
Cells spread out and reach the nerve cells

There’s a high attraction/tropism for schwann cells in the peripheral nervous system
Lose blood supply which gives numbness as the cells die and they digest their myelin sheaths (demyelination)

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23
Q

leprosy spectrum of infection

A

The cell-mediated (Th1) response of the TT pole features the elimination
or containment of the organism in granulomas

While the ineffective humoral
response at the LL (Th2) pole allows the proliferation of mycobacteria within
and around foamy macrophages.
Reversal reactions reflect a sudden shift toward the Th1 pole from the BT, BB, or BL state and can lead to irreversible
nerve damage (neuritis).

Erythema nodosum leprosum (ENL) reactions occur in patients with BL or LL leprosy and reflect an increase in both cell-mediated and humoral responses to M. leprae. ENL is associated with the systemic release of TNF and IL-4, a brisk polymorphonuclear leukocyte (PMN) influx, and antigen-antibody (Ag/Ab) complex deposition.

24
Q

mechanism of nerve damage

A

The mechanism of nerve damage is unclear but may involve immune injury
due to: the release of inflammatory cytokines or activity of cytotoxic T cells,
ischemia due to edema within the perineural sheath, apoptosis, or demyelination

25
Q

The immune response to M. leprae

A

VERY IMPORTANT

LOOK AT DIAGRAM OF MECHANISM IN L9 S16 AND S17

26
Q

Evolution of Toll-like receptor 1 (TLR1): coevolution of Leprosy and the human genome

A

M. leprae is an obligate intracellular pathogen that causes leprosy (remains endemic in many parts of the world)
The genome of M. leprae shows many pseudogenes. It appears to be a metabolically impaired

SNPs have TLR1 and HLA-DRB1/DQA1 as major leprosy susceptibility genes.
Studying the geographical distribution of this hypofunctional TLR1 variant demonstrated extreme population differentiation at this locus

suggest that leprosy may have contributed to the evolution of this genomic region
– Very degenerate pathogen as it lost a lot of genes

27
Q

Population differentiation at Toll-like receptor 1 (TLR1) region

A

The hydrophilic serine substitution (TLR1 I602S) is result of mutation and is rare in Africa and Asia, but a significant proportion of individuals of European descent are homozygous for this knockout variant

As you migrate north, the mutation gives resistance to leprosy

These functional TLR1 knockout individuals have a normal immunological phenotype and are protected against leprosy, suggesting that M. leprae may have utilized TLR1 as part of its pathogenesis mechanisms

28
Q

compare the genome of M leprae and M tuberculosis

A

Reduced gene function and pseudogenes

The genome of M. leprae (Ml) currently constitutes the most extreme example known of an eroded genome with 1133 annotated pseudogenes and 1614 protein-coding genes .

For comparison, the closely related genome of M. tuberculosis (Mt) has 3959 protein-coding genes and only 46 pseudogenes

–> Most of the pseudogenes in Ml have degenerated mostly after gene-by-gene inactivation. Although the transcription of pseudogenes in Ml has been detected, the role of transcribed pseudogenes is not clear and the majority of annotated pseudogenes are not translated into protein.

29
Q

Treatment and chemotherapy of leprosy

A

Treatment of leprosy with sulphones and dapsone
in 1981, WHO recommended a multidrug therapy comprising of DAPSONE, CLOFAZAMINE and RIFAMPIN.
Since then the number of registered cases under treatment worldwide has declined from about 12 million to less than one million in 1999.

30
Q

Emergence of resistant strains

A

Emergence of resistant strains of Mycobacterium leprae to all three drugs and the increasing incidence of relapsed cases several years after completing
the multidrug therapy has created a considerable concern in the elimination and eradication of leprosy.

BCG offers some protection due to cross reactivity of
antigens

31
Q

Inhibitors of folate biosynthesis

A

Inhibitors of folate biosynthesis are used in the therapy of infectious diseases.

Sulphones and sulphonamides act as competitive inhibitors of the 7,8-dihydropteroate synthase (DHPS) // 2,4-diamino-5-benzylpyrimidines are competitive inhibitors of the 7,8-dihydrofolate reductase (DHFR).

The combination of these two types of inhibitors leads to a strong synergism in antibacterial action although activity against mycobacteria is rather low. Dihydrofolate reductase inhibitors have been synthesized to bind differentially to bacterial and not to
mammalian enzymes.

32
Q

CLOFAZIMINE and its killing mechanisms of membrane-damaging agents

A

Clofazimine is a membrane-disrupting agent

Killing mechanisms of membrane-damaging agents:

  • Toroidal pore formation
  • aggregation of the antimicrobial bends the lipid bilayer
  • forming a pore
  • Barrel-stave pore formation (the hydrophobic portion of the antimicrobial aligns with membrane lipids, with the hydrophilic portion facing inward to form a pore)
  • Carpet-like pore formation (coating of the bilayer is proposed to result in micelle formation and membrane dissolution)

Not all agents will exhibit these actions, as this depends on drug structure and the interactions made in the membrane. By damaging the membrane, these antimicrobials affect numerous cellular functions, including the function of membrane-bound enzymes such as those involved in the respiratory chain

33
Q

DIAMINODIPHENYLSULFONE (dapsone, DDS)

A

DDS acts as a synthase inhibitor in the folate synthesizing enzyme system.

DDS reacts with the substrate 7,8-dihydro-6-hydroxymethylpterinopyrophosphate to form a 7,8-dihydropteroic acid analog. Thus inhibiting the dihydropterate synthase (DHPS).

The anti-inflammatory mechanisms of dapsone appear to be separate from its antibacterial properties

34
Q

RIFAMPICIN

A

One of the ansamycin class of antibiotics.
Semisynthetic as it is modified from the
natural product rifamycin.

Action is a RNA polymerase inhibitor, the only one in clinical use for blocking
bacterial transcription.

RNA pol has core tetramer of αββ’γ subunits

Rifampicin binds to β subunit at an allosteric site not the active site. Resistance mutations are recovered from this region for both M. leprae and M. tuberculosis

35
Q

causative agent of TUBERCULOSIS

A

MYCOBACTERIUM TUBERCULOSIS

36
Q

prevalence of TB?

A

Total incident in the whole population (not just infected individuals)
Most widespread
Highest prevalence of disease per healthy population is in south africa
Elsewhere, there is much less because there is more intensive antibiotic therapy

37
Q

The life cycle of M. tuberculosis

LOOK AT DIAGRAMS IN L10 S7

A

The infection is initiated when Mtb bacilli, present in exhaled droplets or nuclei, are inhaled and
phagocytosed by resident alveolar macrophages

The resulting proinflammatory response triggers the infected cells to invade the subtending epithelium

This response also leads to the recruitment of
monocytes from the circulation, as well as extensive neovascularization
of the infection site.

The macrophages form the granulomas along with epithelioid cells,
Multinucleate giant cells, and foam cells filled with lipid droplets, a fibrous cuff of extracellular matrix
material may form.
(If cells are not cleared then we have a cup of fibrous material (from host) and you can’t get antibiotics into that so it is more difficult to treat. The caseum gloop is impenetrable as well)

Progression toward disease is characterized by the loss of vascularization, increased necrosis, and the accumulation of caseum in the granuloma centre.

38
Q

natural history of infection and the immune response

A

If we are healthy and had inherited adapted immunity, we get the infection n the macrophages but only 5% of people will get proliferation?

Other 90% of people are latent
APC are very important in immunity
Adaptive immunity develops on exposure
Bacillus (an inactivated live vaccine by mutation to remove all virulence regions)

39
Q

apoptosis of infected macrophages

LOOK AT S10 L9

A

Apoptosis of infected macrophages provides an important link to adaptive immunity, as apoptotic vesicles containing bacterial antigens are taken up by dendritic cells.

The dendritic cells can efficiently present these antigens to naive T cells, leading to their activation

40
Q

describe the virulence route (vulnerable infected individual)

A
  • macrophage
  • attenuated m tuberculosis
  • apoptosis of the infected macrophage
  • restriction of bacterial replication
  • phagocytosis of apoptotic vesicles
  • cross priming of CBD+T cells
41
Q

describe the adaptive immunity pathway (cell mediated)

A
  • macrophage
  • virulent m tuberculosis
  • putative phagosomal membrane damage and bacterial translocation
  • necrosis of the infected macrophage
  • infection of other macrophages
42
Q

The immune response to M. tuberculosis infection

A
  • The innate and adaptive immune systems allow most healthy people (> 90%) to control the growth of M. tuberculosis
  • although they harbour latent infection (it is not known whether host immune responses can eliminate infection).
  • Some individuals, especially those with impaired T cell function, develop active tuberculosis (TB), either as primary progression or as a reactivation.
  • M. tuberculosis is phagocytosed by antigen-presenting cells (APCs), including macrophages, monocytes and dendritic cells, and survives in phagosomes.
  • M. tuberculosis ligands, including lipoproteins and glycolipids, are recognized in APCs by Toll-like receptors (TLRs) and nucleotide-binding oligomerization domain (NOD) protein
  • this results in the secretion of inflammatory cytokines and chemokines.
  • Infected APCs migrate to regional lymphoid tissues, where adaptive immunity develops through antigen presentation to naive T cells
  • APCs process M. tuberculosis antigens by intravacuolar proteolysis to produce peptides that bind to major histocompatibility complex (MHC) class II molecules
  • MHC class II molecules then translocate to the cell surface to mediate presentation of M. tuberculosis peptides to CD4+ T cells.
  • M. tuberculosis peptides are also presented by MHC class I molecules to CD8+ T cells.
  • Effector and memory T cells migrate back to sites of infection to control M. tuberculosis growth.
  • Granulomas develop through the secretion of tumour necrosis factor and other effector cytokines
43
Q

BCG vaccine efficacy in humans

LEARN ABOUT GRAPHS IN L10 S12

A

Widely used vaccine, remains controversial
Hypothesis- that EM exposure is highest at lower latitudes, tropical countries

This is the vaccine that was developed in the 1890s. We still haven’t found a new vaccine. This makes it expensive because we are cloning the same live attenuated form

44
Q

A model for human Mycobacterium tuberculosis infection

LOOK AT DIAGRAMS IN L10 S14

A

TOO MUCH INFO TO MAKE A FLASHCARD……

JUST LEARN IT ALL I GUESS ?

45
Q

diagnosis of tuberculosis

A

Most biomarkers are determined in peripheral blood, either in serum/plasma or in leukocytes.
Other, less invasive sources for biomarkers are breath, sputum and urine.
VOC = volatile organic compounds
TB = tuberculosis
(First few months, the symptoms feel like a simple cold of coughs and night sweats)

DIAGNOSIS DIAGRAM

46
Q

m tuberculosis has a unique cell wall. DRAW IT BITCH.

A

yeah.. draw it like the diagram in l10 s16

47
Q

the acid fast stain

A

The lipoid capsule of the acid-fast organism takes up carbol fuchsin and resists decolourization with a dilute acid rinse.
The lipoid capsule of the mycobacteria is of such high molecular weight that it is waxy at room temperature
and successful penetration by the aqueous based staining solutions (such as Gram’s) is prevented.

48
Q

the time scale for TB diagnosis using smear microscopy

A

Smear sputum microscopy is the most commonly used technique in low and middle income countries as it is fast, inexpensive and specific for tuberculosis.

The technique involves smears of unconcentrated sputum being used for with Ziehl – Neelsen staining.

However it is notoriously inaccurate, with a low and variable sensitivity of between 20 and 60% .

(If you do nothing in the first 2 months, you’re fucked and infectious
But the sputum smear is not effective in early diagnosis (only by 5th month)
Sensitivity is very poor)

49
Q

treatments

A
RMP rifampicin
INH isoniazid
PZA pyrazinamide
EMB ethambutol
SM streptomycin

In richer countries, the 5 antibiotics can be used in diff combinations
Rifampicin (stops transcription) is used for dormant cells
Isoniazid is used to kill the cells
Most only impact the heavily growing cells
SM is introduced later because of its bad side effects
After a few months of using SM, they become deaf in one or both ears because it affects the ear hairs
Combinations of diff doses for 4 months or 6 is needed

50
Q

Drug resistant TB

A

MDR-TB is resistant to at least isoniazid and rifampicin, the two most important first-line drugs used in the treatment of TB
result from either primary infection with drug-resistant bacteria or may develop in the course of a patient’s treatment when non-optimal treatment durations or regimens are used. Cure rates for MDR-TB are lower, typically ranging from 50% to 70%.

XDR-TB is resistant to isoniazid and rifampicin as well as any fluoroquinolone and any of the second-line anti-TB injectable drugs (amikacin, kanamycinor capreomycin). It has very high mortality rates

51
Q

mycobacterial latency

A

Latent TB is asymptomatic and not infectious; it arises upon immune restriction of the growth of M. tuberculosis in hosts.

5% (higher risk if immunosuppressed; for example, with HIV) of these patients will go on to develop active disease at some stage in life.

dormancy = latent TB disease as well as a metabolic state of non-replicative Mtb.

Of several environmental stresses encountered by the Mtb in host cells, hypoxia has been shown to induce non-replicative bacterial phenotypes, leading to tolerance towards certain drugs like cell-wall inhibitors such as isoniazid; and lack of potent drug activity on these bacterial phenotypes may be responsible for prolonging the TB treatment duration

52
Q

WHO 2019 antibioticsfor MDR-XDR TB

A
clofazimine
levofloxacin
linezolid
moxifloxacin
nitazoxanide
rifampicin (high dose)
rifapentine
53
Q

Number of HIV-infected persons receiving antiretroviral treatment (ART) and percentage of persons receiving concomitant tuberculosis (TB) treatment in Africa, 2002–2007

A

GRAPH IN L10 S23
as years go by, the number of persons receiving ART increased from 10 000 in 2002 –> 2 100 000 in 2007

percentage of persons also receiving TB treatment also increased from 1% in 2003 –> 4% in 2007

54
Q

DNA-based diagnostic methods GeneXpert MTB/RIF

A

Xpert MTB/RIF is a new diagnostic technique which accurately tests not only for the presence of Mycobacterium tuberculosis but also for the
resence of rifampicin resistance.

It was recommended by WHO in 2010 and has since been rapidly adopted by a number of countries including South Africa, which is the leading adopter of this technology

55
Q

Current clinical pipeline for TB

A

LOOK AT DIAGRAM IN L10 S25

56
Q

Strategies for fighting infection

A

Alter the MPC eg C8-methoxy fluoroquinolones

New drugs show equal efficacy against both targets making less difference.

Between MIC and MPC latter is low reducing number of surviving mutants

Design drugs to attack resistance mechanisms eg clavulanic acid for inhibition of b-lactamase and vancomycin resistance where new depsipeptide formation was inhibited

Multiple drug therapy- alternate drugs eg TB

57
Q

Managing resistance

Maintain serum levels of drug above MIC

Trends in TB cases statistics

A

LOOK AT L10 S27 TO S30