Infectious DIsease - Viral Basics Flashcards
A virus is an infectious, ________ intracellular parasite comprising genetic material (DNA or RNA), surrounded by a ________ coat and sometimes a ________.
A virus is an infectious, obligate intracellular parasite comprising genetic material (DNA or RNA), surrounded by a protein coat and sometimes a membrane.
The basic building blocks of any virus are a genome, a _________ (protein coat), and possibly an _________ (membrane).
The basic building blocks of any virus are a genome, a capsid, (protein coat) and possibly an envelope (membrane).
True/False.
Different virusal species can contain a genome made of DNA, RNA, or a mix of both.
False.
Different virusal species can contain a genome made of either DNA or RNA.
Is there much variation in how viral genomes are organized?
Yes
(can be linear, circular, segmented; positive-sense, negative-sense; single-stranded, double-stranded; etc.)
What part of the viral genome encodes for protein synthesis machinery (tRNA, rRNA, eIFs, etc.)?
What part of the viral genome encodes for proteins and that regulate energy production?
What part of the viral genome encodes for biosynthesis of membranes?
None;
none;
none
(the above categories do not exist in viral genomes)
Describe a few of the basic structures that viral capsids can form.
True/False.
Forming the protein coat (capsid) that surrounds the viral genome is a fairly complex process that is probably one of the most intricate and energy-dependent processes controlled by the virus.
False.
The capsid is often made of subunit monomers that can self-assemble into the larger whole with no enzymatic or energetic requirements.
Viral capsids must be ______stable so that they can survive the external environment but will easily come apart inside host cells.
Viral capsids must be metastable so that they can survive the external environment but will easily come apart inside host cells.
In order to create a metastable viral capsid, what type of bond usually holds the capsid subunits together?
Loose, electrostatic interactions
The two most common types of symmetry seen in viral capsids are _________ and _________ symmetry.
What is the term that refers to capsids not following these patterns?
The two most common types of symmetry seen in viral capsids are helical and icosahedral symmetry.
Complex
Which viral capsule shape is always enveloped?
Helical
What type of virus has the most complex capsid structure?
Bacteriophages
A virus surrounded by a bilipid membrane is called a(n) ___________ virus.
A virus not surrounded by a bilipid membrane is called a(n) ___________ virus.
A virus surrounded by a bilipid membrane is called an enveloped virus.
A virus not surrounded by a bilipid membrane is called a naked virus.
______________ viruses are released from their host cells via cell lysis.
______________ viruses are released from their host cells via budding (cell survives) or lysis.
Naked viruses are released from their host cells via cell lysis.
Enveloped viruses are released from their host cells via budding (cell survives) or lysis.
Enveloped viruses are released from their host cells via ________ or ________.
Naked viruses are released from their host cells via ________.
Enveloped viruses are released from their host cells via budding (cell survives) or lysis.
Naked viruses are released from their host cells via cell lysis.
_________ viruses are resistant to heat, acids, detergents, dessication, etc.
_________ viruses are not.
Naked viruses are resistant to heat, acids, detergents, dessication, etc. (stabile).
Enveloped viruses are not (labile).
A dessicated _________ (naked / enveloped) virus is still infectious.
A dessicated naked virus is still infectious.
Can a naked or an enveloped virus or both survive within the GI tract?
Naked only
(stable)
Naked viruses stimulate what immune response?
Enveloped viruses stimulate what immune response?
Antibody production;
antibody production, cell-mediated response
What advantages are conferred on an enveloped virus via the presence of its membrane?
Some protection from host immune responses, enzymes, and certain chemicals
How are enveloped viruses typically transmitted?
(Labile viruses)
Droplets,
secretions
(also, transplants)
How are naked viruses typically transmitted?
(Stabile viruses)
Fomites,
dust,
fecal-oral,
droplets
True/False.
Some virusal genomes encode for lipid membranes so the virus can become ‘enveloped.’
False.
All viral envelopes are derived from host cell membranes (viruses do not encode membrane production).
Although enveloped viruses form their envelopes from host cell membranes, how does the virus change the membrane?
Insertion of glycoproteins
(for host cell attachment, antigenicity, etc.)
Describe how viral glycoproteins allow for viral envelope formation from host cell membranes.
Via matrix proteins
(mediators of capsid-glycoprotein interactions)
What determines viral attachment to and specificity for host cells?
Surface proteins
(capsid proteins or envelope glycoproteins)
All viruses are in the order ‘-virales.’
The suffix for viral familal classifications is: ‘-_______.’
The suffix for viral genus classifications is: ‘-_______.’
The species are then named more specifically.
(Kingdom –> phylum –> Class –> Order –> Family –> Genus –> Species)
All viruses are in the order ‘-virales.’
The suffix for viral familal classifications is: ‘-viridae.’
The suffix for viral genus classifications is: ‘-virus.’
The species are then named more specifically.
(Kingdom –> phylum –> Class –> Order –> Family –> Genus –> Species)
No matter their genome structure, all viruses converge at a need to synthesize _______ to alter host function.
No matter their genome structure, all viruses converge at a need to synthesize mRNA to alter host function.
What mnemonic is useful in remembering which viral families are DNA viruses?
DNA viruses are HHAPPPPy
Hepadnaviridae
Herpes
Adenoviridae
Poxviridae
Parvoviridae
Papilloma
Polyoma
The mnemonic HHAPPPPy is useful in remembering which viral families are DNA viruses. Name the viruses:
H_________
H_________
A_________
Poxviridae
Parvoviridae
Papilloma
Polyoma
Hepadnaviridae
Herpes
Adenoviridae
Poxviridae
Parvoviridae
Papilloma
Polyoma
The mnemonic HHAPPPPy is useful in remembering which viral families are DNA viruses. Name the viruses:
Hepadnaviridae
Herpes
Adenoviridae
P_________
P_________
Papilloma
Polyoma
Hepadnaviridae
Herpes
Adenoviridae
Poxviridae
Parvoviridae
Papilloma
Polyoma
The mnemonic HHAPPPPy is useful in remembering which viral families are DNA viruses. Name the viruses:
Hepadnaviridae
Herpes
Adenoviridae
Poxviridae
Parvoviridae
P_______
P_______
Hepadnaviridae
Herpes
Adenoviridae
Poxviridae
Parvoviridae
Papilloma
Polyoma
All DNA viruses are ________-stranded, except for the _________ family.
All DNA viruses are double-stranded, except for the Parvoviridae family.
All DNA viruses are ________ (shape), except for the _________ family.
All DNA viruses are icosahedral, except for the Poxviridae family.
All RNA viruses except for the _________ family are __RNA.
All RNA viruses except for the Reoviridae family (dsRNA) are ssRNA.
Most viruses only have one copy of their genome.
What type of virus has two?
Retroviruses
All viruses must produce ______ to be translated by the host ribosomes.
All viruses must produce mRNA to be translated by the host ribosomes.
What are the phases of viral growth as represented on a graph showing infectious virions per cell (Y-axis) and time (X-axis)?
- Eclipse period
- Exponential growth period
The ‘eclipse period’ of viral growth for a certain cell is the time after ____________ in which no virions can be found in the cell due to ___________ (release) of the viral genome.
How long does this process typically take?
What is the next phase?
The ‘eclipse period’ of viral growth for a certain cell is the time after infection in which no virions can be found in the cell due to uncoating (release) of the viral genome.
1 - 20 hours;
the exponential period
List the major steps of the viral lifecycle:
- _____________
- _____________
- Uncoating
- Synthesis
- Assembly
- Release
List the major steps of the viral lifecycle:
- Adsorption (adhesion to cell exterior)
- Penetration (entry into cell)
- Uncoating
- Synthesis
- Assembly
- Release
List the major steps of the viral lifecycle:
- Adsorption
- Penetration
- ___________
- ___________
- Assembly
- Release
List the major steps of the viral lifecycle:
- Adsorption
- Penetration
- Uncoating
- Synthesis
- Assembly
- Release
List the major steps of the viral lifecycle:
- Adsorption
- Penetration
- Uncoating
- Synthesis
- ___________
- ___________
List the major steps of the viral lifecycle:
- Adsorption
- Penetration
- Uncoating
- Synthesis
- Assembly
- Release
True/False.
During the eclipse period of the viral lifecycle, only viral fragments are present inside the host cell.
True.
Uncoating of the genome has occurred and no complete virions are detectable until new virions have been synthesized and assembled.
A __________ cell has the receptor that a specific virus binds. A __________ cell does not.
A permissive cell may be either of the above, and this cell does have the capacity to replicate the virus should it enter.
A susceptible cell has the receptor that a specific virus binds. A resistant cell does not.
A permissive cell may be either of the above, and this cell does have the capacity to replicate the virus should it enter.
A susceptible cell has the receptor that a specific virus binds. A resistant cell does not.
A __________ cell may be either of the above, and this cell _____ (does / does not) have the capacity to replicate the virus should it enter.
A susceptible cell has the receptor that a specific virus binds. A resistant cell does not.
A permissive cell may be either of the above, and this cell does have the capacity to replicate the virus should it enter.
True/False.
A cell must be either susceptible (viral receptor present) or permissive (can replicate the virus) in order to successfully take up and replicate a specific virus.
False.
A cell must be both susceptible (viral receptor present) and permissive (can replicate the virus) in order to successfully take up and replicate a specific virus.
Viral adsorption describes viral __________ coming into contact with cell __________.
Viral adsorption describes viral proteins coming into contact with cell surface proteins.
(E.g. HIV surface proteins interacting with TH cell CD4 and CXCR4)
How do naked viruses typically penetrate the cell?
And enveloped viruses?
Direct penetration OR endocytosis;
membrane fusion OR endocytosis
What does it mean that viruses in the Hepadnaviridae family have ‘gapped’ DNA?
Their genome is a mix of single- and double-stranded DNA
All viral ssDNA or gapped DNA must be converted to _______ in the host nucleus before it can be transcribed to mRNA.
All viral ssDNA or gapped DNA must be converted to dsDNA in the host nucleus before it can be transcribed to mRNA.
Ribsome-ready mRNA from a virus is termed ________-sense, meaning it is ready for immediate translation.
Ribsome-ready mRNA from a virus is termed positive-sense, meaning it is ready for immediate translation.
Viral RNA and DNA __________ of (+) strands are (-) strands.
Viral RNA and DNA complements of (+) strands are (-) strands.
True/False.
Positive-sense RNA are ready for translation.
Not necessarily!
Positive-sense mRNA are ready for translation, but some positive sense RNA may need adjustment first.
Cells do not make _____-dependent RNA polymerase, but viral genomes do.
Cells do not make RNA-dependent RNA polymerase (RdRp), but viral genomes do.
(I) If viral dsDNA enters a host cell, what happens next?
(1st of 7 options in the Baltimore system)
(I) Immediate transcription to mRNA