Infection Flashcards
What colour do gram positive bacteria stain?
Purple
What colour do gram negative bacteria stain?
Pink
What size peptidoglycan layer do gram positive bacteria have?
Thick
What size peptidoglycan layer do gram negative bacteria have?
Thin
Which bacteria have an outer membrane?
Gram negative
How much lipopolysachharide do gram positive bacteria have?
Low levels
How much peptidoglycan content do gram negative bacteria have
High content
Which type of bacteria are more resistant?
Gram negative
What type of bacteria tend to favour exotoxins instead of endotoxins
Gram positive
Which type of bacteria tend to favour endotoxins instead of exotoxins?
Gram negative
What are endotoxins?
Bacterial toxins consisting of lipids located within a cell
Name some gram positive cocci
Staph aureus Coagulase negative staph Streptococcus pneumoniae Strep pyogenes Beta and alpha haemolytic strep
Name some gram positive bacilli
Clostridium difficile
Listeria monocytogenes
Bacillus anthracis
Bacillus lereus
Name some gram negative cocci
Neisseria meningitidis
Neisseria gonorrhoeal
Moraxella catarhalis
Name some gram negative bacilli
Escherichia coli
Haemophilus influenza
Klebsiela pneumoniae
Salmonella typhi
What are some key viruses to know?
Adenovirus Norovirus Epstein Barr HIV Hepatitis
What are 2 classifications of fungi?
Yeasts and moulds
What are some examples of yeast infection
Candida albicans
Cryptococcus Noeformans
Pneumocystis jiroveci
What are some examples of mould infections?
Aspergillus
Dermatophytes (ring worm, athletes foot)
What are single cell fungi
Yeasts
What are the 2 classifications of parasites
Protozoa
Helminths
What are Protozoa
Single cell parasites
What are some examples of Protozoa?
Malaria Giardia Lambia Cryptosporidium parvum Plasmodium falciparum Trypanesoma cruzi
What are some examples of helminths
Roundworms
Tapeworms
Flukes
What is first line defence in inate immunity?
Barriers- physical, physiological, chemical, biological
What are some examples of inate immunity physical barriers?
Skin
Mucousal membranes
Bronchial cilia
What are some examples of inate physiological barriers
Vomiting
Coughing
Sneezing
Diarrhoea
What are some examples of inate immunity chemical barriers?
Low PH of vagina, stomach, skin
Antimicrobial- IGA, lysozymes, gastric acid
What are biological barriers in reference to 1st line defecnce
Natural flora
What 3 things does the natural flora do that is beneficial for the host?
Competes for resources
Produce antimicrobial
Synthesise vitamins
What are some issues with normal flora?
Can be displaced out of its normal environment
Can be pathogenic in immunocompromised
Can be depleted by antibiotics
What are second line defences of the inate immune system?
Phagocytosis
Opsinisation
Complement system
Cytokinesis
What do pathogens have on them that allow them to be detected non specifically?
What are they
Pathogen associated molecular pattern PAMP
Carbohydrates, lipids, proteins, nucleic acids
What is a pamp and what is it recognised by?
Pathogen associated molecular pattern
Pathogen recognition receptors PRR
What’s a PRR and what does it recognise
Pathogen recognition receptor- PAMPS
Aside from PAMPS what else can a pathogen have that will enhance recognition?
Opsonins attached
What are some examples of phagocytes that could be involved in the inate immune response
Macrophages Monocytes Neutrophils Basophils Eisonophils NKC Dendritic cells
What organs are macrophages present in?
All of them
What do macrophages present to?
What can they produce?
T cells
Cytokines/ chemokines
Monocytes are found where? What can they differentiate into?
Found in the blood
Macrophes or dendritic cells
Where are neutrophils found?
How are they recruited in the inate immune response?
What can they ingest?
In the blood
Recruited by chemokines
Ingest pyogenic species
Basophils/ mast cells are early actors in what?
Inflammation
Eisonophils are our defence mechanism against what?
Parasites
What do NKC target?
Abnormal host cells (virus, cancer)
What do dendritic cells do?
Present microbial antigens to T cells
What are some examples of opsonins
Complement: C3b, C4b
Antibodies: IgG, IgM
Acute phase proteins: CRP, mannose binding lectin MBL
Once a PRR has attached to a PAMP what happens?
Engulfment
Phagolysosome formation
Oxygen dependent and oxygen independent breakdown
What are some oxygen dependent examples of breakdown in the phagolysosome
Respiritory burst with oxygen radicals:
Hydrogen peroxide
Hydroxyl radicals
NO
What are some oxygen independent actions in the phagolysosome
Lysozyme
Transferrin
Cationic proteins
Proteolytic enzymes
What are the 2 complement pathways and how are they activate?
Alternate: initiated by cell surface microbial
MBL (classic)- when Manose binds to Manose binding lectin
What is the role of C3a and C5a in the complement pathway?
Recruit phagocytes
What is the role of C3b-C4b in the complement pathway
Opsinisation
What is the role of C5-C9 in the complement pathway
Membrane attack complex
Opsonins like IgM and IgG are essential in what? Especially when?
Clearing encapsulated bacteria
Especially in asplenic
What signals for cytokine release?
Toll like receptors (signalling PRR)
What’s a signalling PRR
Toll like receptor
What are the 3 functional categories of cytokines
Cytokines that regulate inate
Cytokines that regulate adaptive
Cytokines that regulate haematopoesis
Cytokines that regulate the inate immune system are mostly produced by what
Macrophages and dendritic cells
What are some key inate immune response cytokines
TNF
IL-1
IL-6
What 4 big affects do the cytokines TNF alpha, IL-1 and IL-6 have in the inate immune response
Stimulate liver
Stimulate bone marrow
Stimulate hypothalamus
Stimulate inflammation
What effect does TNF, IL1 and IL6 have on the liver in the inate immune response
Production and excretion of CRP and MBL
What effect does TNF, IL1 and IL6 have on the bone marrow in the inate immune response
Neutrophil mobilisation
What effect does TNF, IL1 and IL6 have on the hypothalamus in the inate immune response
Stimulates an increase in body temp
TNF alpha, IL6 and IL1 stimulate inflammation in the inate immune response, what 4 things does this do
Vasodilation
Increased vascular permeability
Adhesion molecules
Neutrophil attraction and invasion
What does a macrophage/dendritic cell do to initiate a adaptive immune response
Capture
Process
Present
Where are antigen presenting cells strategically located?
Skin (SALT)
Mucous membranes (GALT, NALT, BALT, GUALT)
Lymphoid organs
Blood circulation
What antigen presenting cells are found in the skin
Langerhanns
Macrophages
What antigen presenting cells are found in lymphoid organs
B cells
Dendritic cells
Macrophages
What antigen presenting cells are found in mucous membranes
Dendritic cells
Macrophages
What can the ‘Capture’ Portion of capture process present be?
Phagocytosis (whole microbe)
Micropinocytosis (particles)
What does MHC stand for?
Major histocompatability complex
Where are MHC genes located
Chromosome 6
What HLA genes are present on all nucleated cells
HLA A/B/C
What do HLA A/B/C code for>
MHC class 1
What cells have HLA Dr/Dq/Dp ?
What does it code for?
Dendritic, macrophages, B cells
Class 2 MHC
What are some key features about the expression of class 1 and 2 HLA genes
Co dominant expression
Polymorphic genes
What do MHC class 1 present
Intracellular- virus, tumour, intracellular bacteria
What do MHC class 1 present to?
CD8
What is TAP and what is it to do with?
Transport associated presentation. Associated with MHC class 1 processing
Where do intracellular contents bind to the MHC1 molecule before presentation?
RER
What is a CD8 cell also known as?
T Killer cell
CD8 is associated with what adaptive immune response?
Cell dependent
When a CD8 cell beings to a MHC1 complex what is the result
Activation to a cytotoxic t lymphocyte.
Perforins and granzymes used on the infected cell
What MHCs are used in the cell dependent response?
Both MHC1 and MHC2
What is the role of MHC2 in the cell depdendent response?
Recruits CD4 TH1 cells
CD4 TH1 cells:
What part of the adapative immune response?
What do they secrete?
What does that activate?
Cell dependent
IFNg
Activate B cells to make IgG antibodies and macrophages to phagocytise
What is costimulation in relation to the adaptive immune response?
Naive T helper cells receive cytokines co stimulation as well as MHC
TH1, TH2, TH17
Where are MHC2 proteins exported from?
from the ER in a vesicle
What blocks the binding cleft of MHC2 protein?
Class2 associated invariant chain peptide CLIP
What removes CLIP to replace it with an antigen peptide, in the processing of an MHC2 protein?
HLA-DM
What do MHC class 2s present to?
CD4 cells- TH1,2,17
what are CD4 cells
T helper cells
What MHC is needed for the humoral response?
MHC2
In the humoral response what does MHC2 present to
CD4 TH2 and TH17
An important aspect of the binding clefts in MHC molecules is what?
They are highly polymorphic
In the humoral response. What CD4 cell attracts neutrophils? What does it use?
CD4 TH17 uses IL17 to attract neutrophils
What part of the humoral response recruits eosinophils?
When would this happen
What’s secreted
MHC2-> CD4 TH2
To kill parasites
Secreted IL-5 to attract eosinophils
How are B cells and Mast cells recruited in the humoral response?
CD4 TH2 (activated by MHC2) secretes IL-4, this attracts both mast cels and B cells
A B cell recruited by a TH2 CD4 cell will do what?
Differentiate into B memory
Complete isotype switching and secrete antibodies
Activating phagocytosis and complement
What does a mast cell secrete as an antibody
IgE
What is IgG when is it used
Antibody, FC dependent
Complement activation, neonatal immunity, toxins/virus neutralisation
What does IgM activate?
Complement
What does IgE do?
Provides immunity against helminths and mast cell degranulation
What is IgA for?
Mucousal immunity
What antibody is highest in initial exposure to a pathogen?
IgM
Which antibody is higher in exposure to the same pathogen on the second time?
IgG
What is a benefit of higher IgG on second exposure?
Faster, longer, higher affinity response
What is septic shock
Persisting hypotension, requiring treatment despite fluidn resuscitation
What is sepsis?
Life threatening organ dysfunction due to a dysregulated response to infection
What first has to happen before sepsis can begin to be set in motion?
The pathogen must enter the blood stream
What becomes amplified and dysregulated (mostly) in sepsis?
Cytokine release
What 4 big things does the amplified, dysregulated release of cytokines invoke in sepsis?
Increase vasodilation and capillary permeability
Pyrexia induction at hypothalamus
Coagulation, metabolism and neuroendocrine activation
Post hyperinflammation induced immunoparalysis
What are 5 symptoms of sepsis
Decreased BP Raised HR Raised RR Temp up or down DIC
Why do we get increased HR in sepsis
There is a drop in BP, HR rises to compensate
Why is there a drop in BP with sepsis?
Mass vasodilation (distributorry) DIC
Why does RR rate increase in sepssis
As a response to hypoxia
What are the sepsis 6
Give 3- iv fluids, oxygen, IV ABx
Take 3- urine, blood cultures, lactate and FBC
Why give IV fluids in sepsis
Raise BP
Why give oxygen in sepsis
Patient likely hypoxic
Why measure urine output in sepsis
Decrease indicated organ failure
What does sepsis result in?
Multi organ failure
How can streptocccus be divided by haemolysis?
Alpha haemolytic (partial) Beta haemolytic (complete) Gamma haemolytic (no haemolysis)
How many different types of strep are there?
6
What haemolytic group is strep pneumonia
Alpha haemolytic
What streps are alpha haemolytic? What does this mean? What is seen on agar?
Strep pneumoniae and strep viridans
Partially breaks down rbc
Green halo
Does strep pneumoniae have a capsule?
Yes
What 4 main diseases can strep pneumonia cause?
Meningitis (no 1 cause in adults)
Pneumonia (no 1 cause in adults)
Otitis media
Sinusitis
MOPS
What are the 2 virulence factors that strep pneumonia has?
Capsule
IgA protease
Why is is important that strep pneumoniae has a IgA protease?
Because IgA is the main antibody in mucousal surfaces, where it mainly infects
What gram stain is strep pneumonia?
Gram positive diplodocus
Who is catalase positive? Strep or staph?
Staph
Which staph is coagulase positive? Staph aureus or staph epidermis?
Staph aureus
What gram stain is staph aureus
Gram positive cocci clusters
Why does staph aureus have a golden halo on blood agar?
It’s a beta haemolytic and has broken down the RBC completely
What are 3 important endotoxins staph aureus has?
Protein A- binds antibodies at FC portion (less opsinisation)
Coagulase- causes coagulation (fibrin strands around bacteria) allows it to cause abscesses
Penicilinase- normal penicillins broken down, methicillin can in theory work but not in MRSA
What are 3 important exotoxins staph aureus has?
Exfoliatin- causes scalded skin syndrome
Enterotoxin- cause gastroenteritis
TSST-1- toxic shock syndrome
What disease can staph aureus cause from direct invasion
Almost every system Meningitis Acute bacterial endocarditis Pneumonia Sepsis UTI Osteomyelitis Septic arthritis Skin infection/ cellulitis
How do we treat staph aureus
Penicillinase resisitant beta lactams or 1st gen cephalosporins
How has MRSA changed to become resistant to Methicilin? What do we treat it with?
Developed a new penicillin binding protein
Vancomycin
What is staph epidermidis a normal part of the flora for?
What’s the clinical relevance for this?
Normal skin flora
Contaminates samples frequently- urine and bloods
What does staph epidermidis form? Therfore what does it frequently infect?
Biofilm
Prosthetic joints, valves, IV lines
How does staph epidermidis cause infection?
How do we treat it? Why
By causing a biofilm
Vancomycin as the biofilm makes it very resistant
What gran stain is strep viridans
Postitive
What kind of haemolysis does strep viridans produce
Alpha
Why is it called strep viridans
Green from alpha haemolytic
Green salad gets stuck in your teeth
Where is strep viridans normal flora?
Oral and GI flora
How can strep viridans cause dental cavities?
Extracellular dextran
What can strep viridans do if it gets in the blood stream eg from dental work?
Sub-acute bacterial endocarditis (using dextran) strep sanguinus
Can cause abscess anywhere (blood borne) strep intermedius
Where would the following sub species of strep viridans cause infection?
Strep mutans
Strep sanguinis
Strep intermedius
Strep mutans- mouth
Strep sanguines- heart valves
Strep intermedius- blood borne tissue abscess
What is non multidrug resistant?
Not succeptible to 1 or less agents in 2 or less antimicrobial classes
What is MDR?
Multi drug resistant- non succeptible to at least 1 agent in 3 or more antimicrobial categories
What is XDR?
Extensively drug resistant- non succeptible to at least one agent in all but 2 or fewer categories
What is PDR
Pan drug resistant- not succeptible to all agents in all categories
What is antimicrobial stewardship
Coordinated interventions designed to improve the selection and use of antimicrobials
What kind of studies have demonstrated antibiotic resistance
Lab studies
Ecological studies
Individual level studies
What are the 3 main elements of antimicrobial stewardship
Persuasive- education, opinion leaders
Restrictive- authorisation needed, stop orders etc
Structural- records, lab tests
What are some examples of process measures in antimicrobial stewardship
Defined daily dose/1000 beds
Adherence guidelines
Benchmarking
What are some outcome measures of antimicrobial stewardship
Patient outcomes, infection rates, emergence of resistance
What defines a healthcare infection?
Onset at least 48 hours after admission
What are the more prevelant healthcare infection sites
UTI
GI
Surgical wound site
Chest (pneumonia )
What are some viral examples of healthcare infection
HEP B, C, HIV
Norovirus
INfluenza
What are some bacterial examples of healthcare infections?
Staph aureus (MRSA) CDIFF ECOLI Klebsiella Pseudomonas
What re some fungal healthcare infections?
Candida
Aspergillus
The 4 ps that determine the likelihood of an acquired healthcare infection are what
4 ps
Patient (are they imminsupressd, diabetic, obese)
Pathogen (its virulence factors, ecological interactions)
Practice (of healthcare workers the polices etc)
Place (fixed and variable)
What are some examples of patient interventions to lower the risk of healthcare infections
Antibiotic prophylaxis Skin prep Hand hygiene Nutrition Screening
How can we reduce patient to patient transmission
Barrier nursing/ isolation
What are some enviromental interventions that can reduce the spread of healthcare infections
Layout ie where the sinks, toilets are etc
Correct use of equipment
Positive and negative pressure Rooms
What it the I face in identifying a potentially harmful pathogen?
Identify (A_F) Isolate Investigate Inform Initiate
What is the A-F in identifying harmful pathogens
Abroad? Blood borne? Colonised (MDR) Diarrhoea and vomiting Expectorating Funny looking rashes
What does person to person indirect require?
A vector such as a mosquito
What’s an endemic disease?
It’s usual background rate
What is an outbreak in relation to disease?
Two or more linked cases in time and place
What’s an epidemic in relation to disease?
A rate of infection greater than the endemic rate
What is a pandemic in relation to disease?
Very high rate of infection spreading across regions
What is a pandemic often due to
Antigen shift, abrupt change in dna making everyone succeptible
What’s antigen drift?
Slow change in dna of an infectious agent
What is the R0 of a pathogen?
The basic reproduction number. The average number of cases generated in a overwise healthy population
If R0 is equal to 1 what does that mean? What if its above 1
1=stable number of cases
Above 1 means its increasing
What can lead to an epidemic or pandemic
Sudden change in pathogen eg new virulence or resistance
Change in practice or social behaviour
Change in the patient that it can affect eg low immune
What determines how transmissible an organism is?
Infectious dose- the number of organisms required to cause infection