Immuno for Exam 5 Flashcards
obligate parasites
viruses capable of reproducing only within a living host cells
Universal features of all viruses
- one or more viral genome segments (RNA or DNA)
- capsid
capsomeres
each face of virus has a triad of identically placed proteins
larger viruses simply have more subunits
various rotational symmetries
most economical way of buildoing a shell - change volume!
Baltimore Classification scheme
classification based on how protein is made and how virus generates mRNA.
how do you get to RNA?
has to be readable my machinery
Group I - dsDNA
make mRNA from cell machinery
papovavirus, papillomaviruses, herpesviruses, adenoviruses
Group II - + ssDNA
make second strand of DNA and then make a lot of RNA
Group III - dsRNA
make single strand mRNA
has own RNA pol which copies negative strand to make a lot of positive strand that gets translated and packaged
once in a new capsid, positive strand is copied to make a negative strand and make dsRNA
Group IV - ssRNA +
i.e. polio
can be read by ribosomes - usually make neg strand to make more pos strand
make template of self and then make more and more
Most positive-strand viruses (Group IV) often make a negative strand copy of themselves: this serves as (a) the template for making more viral genomes and (b) a way to make MORE copies of the positive strand to be translated into proteins.
the RNA is ‘infectious’ in the experimental sense because if introduced directly into a cell without any viral proteins being present it can be translated into the replication proteins including an RNA-dependent RNA polymerase and amplification will follow….
Group V - ss RNA -
i.e. flu
have to make + strand to make mRNA
Group VI - ssRNA +
i.e. HIV
use RT to make ssRNA into dsDNA
then make mRNA
Group VII ds DNA
make ssRNA then rt to make ds DNA
dsDNA-RT virus
+ RNA
can make peptide right from the strand
RNA-dep RNA polymerase
used to make negative (antisense) RNA into positive (sense) RNA so it can be translated
cells don’t have, viruses bring it
often an amplifying step to make more RNA/protein
positive strand ssRNA
no RNA-dep RNA pol, translate immediately, infectious
in reality - makes a lot of negative sense ssRNA too as a template to make more + ssRNA - some to be packaged and some to be translated
negative strand ssRNA
RNA-dep polymerase, transcription first, non-infectious
dsRNA
RNA-dep pol
transcription first, non infectious
structural proteins
components of capsid and envelope
protection btwn cells - some stable, some sensitive
virion-associated enzymes
polyemerase, integraze, enzymes needed to integate into chromosomes
budding
how enveloped viruses are releaesd
cell lysis
how non-enveloped viruses are released
zoonosis
jump from animals to humans
i.e. ebola
from wild and domesticated animals creates a changing landscape of viral disease
virus sensing system
virus has things that activate it
TLRs - rec RNA and DNA
RLRs - rec viral RNA
CDRs- rec viral DNA
stim production of IFN alpha and beta
secete to nearby cells
IFN a/b signaling
bind to IFNAR (same cell or new cell)
TYK2/JAK
STAT/STAT/IRF
stim ISGs - IFN stim genes
PAMPS
general indicators of viruses and ther pathogens
dsRNA
cytDNA
nakedDNA (no chromatin)
viral genome replication intermediates
capsid proteins/env glycoproteins
PRRs
TLRs - endosomes and PM
RIG-I (RLRs) - cytoplasm (mt anchored)
NOD-like Receptors (NLRs) - cytoplasm
CDRs - cytoplasmic DNA receptors
C-type lectin receptors - plasma membrane
TLRs
in plasma membrane, rec PAMPs
either send signal to transcribe pro-inflammatory cytokines OR endoctyosed and then signal to transcribe Type I IFNs
OAS
oligoadenylate synthase
activated by viral dsRNA and makes a 2’-5’ linked oligoadenylates from ATP
that activates RNAse L dimers which degrades RNA
inhibits viral propagation and induces apoptosis
cGAS
activated by cytoplasmic dsDNA
produces cGMP from ATP and GTP which can travel and alert nearby cells OR
bind to STING receptor which leads to a cascade that results in cytokine expression
Type I IFN
a/b
front line defense from cells that contact a lot of pathogens! fibroblasts, epithelial cells, macrophages, monocytes pDCs
mostly viruses, some microbial products
Type II IFN
ifn gamma
T cells and NK cells
immune activation stimulates them
Type III IFN
IFN-lamda
pDCs, endothelial cells
mostly viruses
IFN signaling
bind IFNAR (Type I) or IFNGR (type II)
kinases attract JAK/TYK2 and activate and P STAT
STAT 1/2 bind when P and usually bind to IRF9
goes into nucleus, binds to promoter, transcription of ISGs
IRF9
binds to STAT complex for TF function
herpes simplex Us11
how HSV evades immune system
OAS responds to viral dsRNA
Us11 binds to OAS 11 so it can’t activate RNAse L so viral replication can happen and RNA isn’t degraded!
herpes simplex virus ICP34.5
PRK detects viral dsRNA and when activated it P on EIF2A so it turns off protein synthesis
ICP is a phosphatase that removes the P so protein synthesis and viral replication can happen
Aicardi-Goutieres syndrome (AGS
clinical features mimic in utero acquired infections/systemic lupus
linked to 7 mutations
inhereted mutations lead to inappropriate accumulation of self-derived nucleic acids that induce a sustained Type I IFN response
systemic lupus erythematosus (SLE)
pDCs produce IFN-a in a sustained faschion
stimulate autoreactive B cells to differentiate into plasma cells and produce autoabs, stim autoreactive t cells
DNA and RNA containing immune complexes further activate pDCs, loop!
Defensins
cationic, amphipathic effector peptides of the innate immune system with broad antimicrobial activity
active against enveloped and non-enveloped viruses
alpha-defensins - neutrophils, epithelial cells in the gut
beta-defensins - epithelial cells of skin and mucosal surfaces
don’t understand how they work
secondary immune response
memory B and T cell formation
primary response abs
IgM, IgG, IgA, IgE
tiny fraction respond to given ag
low affinity, low somatic hypermutation
secondary response abs
IgG, IgA, IgE (no M)
many more abs
high affinity, high somatic hypermutations
immuno memory points
resluts from ag exposure
follows primary immune response
more rapid, greater, more effective
innate respoinses help direct memory resoinse
duration of memory varies
how do vaccines induce immunity?
inject into muscle
inflammation - cells to area, acquire ag, exposed to adjuvent
cells migrate to LN, present ag - T cells and maybe B cells – immune response
live attenuated vaccine
organism is alive and can replicate but mutated so can’t cause serious illness
killed vaccine
chemical treatment to kill pathogen so it can’t replicate
subunit vaccine
most antigenic part of vaccine
purified in vector - 1 proein expressed, covalently coupled to carrier
purified secreted protein - toxin
polysaccharide conjugates
immunogenic in infant
polysaccharides bring in T cell help so b cells make better abs against ag
use T cell help for higher affinity abs and longer lived memory
can prevent mucosal colonization - not just disease
adjuvants
stimulate APCs through innate immune receptors
induce:
DC maturation (increase MHC II and costim molecule expression)
dendritic cytokine secreteion to direct differentiation of stim cells
LA vaccines don’t need - still have PAMPS!
immunodeficiency
impaired immune response resulting in increased susceptibility to infections with obligate and opportunistic pathogens
primary immunodeficiencies
resulting from specific genetic defects in a component of the immune system
manifest in infancy or childhood
secondary immunodeficiencies
acquired as a result of disease, treatment, infection
physological immunodeficiencies
newborn/elderly
newborn (low IgG between maternal and own IgG)
glucocorticoids
cause immunosuppression
inhibition of T cells
inhibition of macrophages
apoptosis of immune cells
inhibition of TF needed to activate cells
cyclosporin A
immunosuppressive drug
organ transplant/autoimmune
T cell - rec ag —-> Ca 2+ –> calcineurin –> deP NFAT –> TF activates cytokines
cyclosporin A inhibits calcineurin
metabolic disorders
diabetes, kidney failure
hyperglycemia - suppress immune function and leukocyte igration (vasculopathy)
malnutrition
insufficient uptake of protein –> decreased production of immune cells - need to constantly replenish
zinc = cofactor
decreased number and funcition of T cells and ab roduction by B cells
SCID
T cell defect - from mutations in genes that inhibit lymphocyte development
“bubble boy”
B and T cell defect, impaired ab production
frequent infection with obligate and opportunistic pathogens
candidiasis
failure to thrive
ADA
mutation - build up of nt - toxic
T, B, NK cells
RAG1/2
mutation for scid, no vdj, no b or t cells
AK2
mutation for scid
no b, t, nk - in becoming lymphoid stem cell
IL-2R gamma chain
SCID
no T or NK cellspart of ck receptor for IL7
most common cause of SCID
gene therapy: select CD34+ Stem cells, gene transfer IL2R gamma chain, expand, infuse stem cells
leukemia in 2/9 patients
Omenn syndrome
mutations in Rag 1/2
impaired but not completely absent VDJ
T cell numbers are normal but very restricted and autoreactive
no B cells - decreased IgG
opportunistic infection
looks like GVHD
SCID therapy
avoid infections (bubble boy)
abx
IVIG
bone marrow transplant
somatic gene therapy - IL-2R gamma chain gene transfer
DiGeorge Syndrome
no thymus
reduced number of T cells
increased infection
deletion in part of Ch 22
heart problems
Wiskott-Aldrich Syndrome
mutations in the gene for WAS protein - defects in actin polyerzation and signal transduction in T cells
severe eczema
bleeding (abnormal platelets)
bacterial infections (defect in T cell function)
Agammaglobulinemia
X-linked
no antibodies at all
No B cells
mutations in B cell tyrosine kinase - no signaling
many bacterial infections
hyper IgM Syndrome
B ell numbers are normal but imapired class switching
- B cell intrinsic - AID and UNG - class switch and somatic hypermutation
- mutation in CD40L so T cells can’t signal to B cells to class switch
lots of IgM but no others
CVID
most common, mostly young adults
antibody deficiency but normal B cell numbers
usually genes important for terminal B cell diffeentation into plasma cells