gout CPPD (wk5) Flashcards
2 bases are?
pyrimidine (single ring) or purine (double ring)
pyrimidine= CUT
purine= :pure as gold” = AG
what are the bases in DNA vs RNA
ACTG vs ACGU
sugars
5 C ribose (RNA) or deoxyribose (DNA)
nucleoside vs nucleotide
nucloeside= sugar + base
nucleotide= nucleoside + 1-3 phosphates (i.e. ATP)
ine vs dine or sine endings
ine= bases
sine or dine = nucleoside
3 pyridines to know
- cytosine (cytidine)
- thymine (thymidine) (in DNA)
- uracil (uridine) (in RNA)
CUT ACRONYM!
Note “ine” (DNA bases) to “dine” endings (nucleosides)
4 purines to know
pure as gold = AG + 2 more (HX)
- adenine (adenosine)
- guanine (guanosine)
- xanthine (xanthosine)
- hypoxanthine (inosine)
Note “ine” (bases) to “sine” endings (nucleosides)
pathways for pyrimidine vs purine nucleotide synthesis
purine
1. de novo pathway
2. salvage pathway
pyrimidine
1. de novo pathway
what is activated ribose AKA
phosphoribosyl pyrophosphate PRPP
de novo pathway for purine nucleotide biosynthesis
activated ribose (PRPP) + amino acids + ATP +CO2
salvage pathway for purine nucleotide biosynthesis
activated ribose (PRPP) + base
the base comes from diet, cell turnover
3 main steps of de novo synthesis of purines
PRPP –> phosphoribose (via glutamine adding nitrogen) –> IMP
after IMP is made in de novo synthesis of purines what are the 2 next options
make AMP (via GTP)
or
make GMP (via ATP)
reciprocal control in purine de novo synthesis; when ATP is high you
make ??, when GTP is high is make ??
ATP is high you make GMP, when GTP is high is make AMP
why is salvage pathway for purine synthesis needed
- Important to have, as de novo uses lots of energy
- Uses hypoxanthine, guanine, and adenine bases that already exist
–> via diet, cell turnover
what 2 enzymes could be needed in the purine salvage pathway
and what reaction do they catalyze
HGPRT or APRT
Hypoxanthine-guanine phosphoribosyl transferase
(HGPRT)
Adenine phosphoribosyltransferase (APRT)
useed to catalyze the addition of phosphoribose (sugar+P) from
PRPP to:… the prodcut
Hypoxanthine-guanine phosphoribosyl transferase
(HGPRT) is used to make 2 products in purine salvage pathway what are they
hypoxanthine = IMP
guanine = GMP
what are the 2 substrates for the ring in pyrimidine nucleotide synthesis
Carbamoyl phosphate (made from glutamine, ATP, CO2)
▪ Aspartate
Adenine phosphoribosyltransferase (APRT) is used to make 1 product in purine salvage pathway what is it
adenine to make AMP
what is the difference for pyrimidine vs purine nucleotide synthesis
involves making an intermediate pyrimidine ring first, then attaching a ribose-5-P (via PRPP)
▪ Opposite to purines, where the ring is constructed directly on the ribose-5-P
how to make CTP from UMP in pyrimidine nucleotide synthesis
UMP –> UTP via phosphorylating (2x)
UTP –> CTP via adding nitrogen (aminated) via glutamine
how to make dTMP from UMP in pyrimidine nucleotide synthesis
UMP –> UDP (phosphorylated via kinase)
UDP –> dUMP (deoxugenate)
dUMP –> dTMP (methylated vis folate coenzyme)