Genomic DNA and Nucleic Acids Prework 1 Flashcards

1
Q

how many base pairs are in the human genome?

A

3.2 billion

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2
Q

how many protein coding genes?

A

20,000

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3
Q

how many non coding genes

A

25,000

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4
Q

how many pseudogenes?

A

14,000

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5
Q

how many gene transcripts?

A

200,000

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6
Q

how many nucleotide differences between individuals?

A

3-3.5 million

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7
Q

how many chromosomes are there in each human cell?

A

46
22 autosomes x 2 copies
2 sex chromosomes

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8
Q

what is the difference between euchromatin and heterochromatin?

A

euchromatin is gene rich, structurally open, and contains actively transcribed genes
heterochromatin is repetitive and gene free and structurally compacted

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9
Q

what is the difference between constitutive and facultative heterochromatin?

A

constitutive heterochromatin contains repeats, telomeres and centromeres
facultative contains developmentally silenced genes

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10
Q

what does DNA methylation do?

A

causes irreversible packaging of DNA into heterochromatin

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11
Q

what are some reasons why DNA methylation is so important?

A

silences tissue specific genes in other tissues, methylation of tumor suppressor genes can cause cancer, females have a silenced X chromosome

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12
Q

what makes up a nucleosome?

A

about 200 bp of DNA wrapped around a histone octamer protein core

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13
Q

what are some characteristics of histone proteins?

A

rich in lysine and arginine, highly basic
electrostatic interactions with phosphates on DNA backbone
globular core with flexible tails (tails are the site of modifications)

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14
Q

what are modifications that can be enacted on histone protein tails?

A

small: acetylation, phosphorylation, methylation
large: ubiquitylation, sumoylation, ADP-ribosylation

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15
Q

how do histone modifications differ from DNA modifications?

A

more dynamic; DNA mods are more long term

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16
Q

what does the word “epigenetics” refer to?

A

information in DNA not based upon the nucleotide sequence, but still inherited
ex: maternal/paternal allele specific patterns of DNA methylation at some loci