Genome projects Flashcards

1
Q

Why was sequencing the human genome a significant challenge?

A

The human genome consists of a massive number of base pairs (over 3 billion) and genes (around 20,000)

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2
Q

What made sequencing the human genome possible?

A

The use of bioinformatics

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3
Q

Define bioinformatics

A

The science of collecting and analysing complex biological data, such as genetic codes

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4
Q

What tools does bioinformatics rely on?

A

Computers and algorithms

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5
Q

What role do computers play in bioinformatics?

A

They read, store and organise biological data at a much faster rate than previously possible

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6
Q

What is whole - genome shotgun (WGS) sequencing?

A

A method of sequencing an organism’s DNA by cutting it into small, easily sequenced sections and using computer algorithms to assemble overlapping segments into the entire genome

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7
Q

Why is WGS sequencing effective for determining complete DNA base sequences?

A

It breaks DNA into small sections, making sequence manageable, and uses computer algorithm to align and assemble these sections efficiently

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8
Q

How has DNA sequencing advanced medical screening?

A

It allows quick identification of potential medical problems, enabling early intervention and treatment

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8
Q

What has increased the speed of whole-genome sequencing?

A

Advances in sequencing methods and increased automation of the processes involved

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9
Q

What is one benefit of sequencing the DNA of different organisms?

A

It helps establish evolutionary links between species

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10
Q

What role do computer algorithms play in DNA sequencing?

A

They align overlapping DNA segments to reconstruct the entire genome

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11
Q

How does DNA sequencing contribute to evolutionary biology?

A

It enables the comparison of DNA sequences between species, helping to trace evolutionary relationships

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12
Q

What is the proteome?

A

The proteome is all the proteins produced by the genome of an organism

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13
Q

What determines whether a protein is produced from a gene?

A

A protein is only produced when a gene is switched on, and not all genes are switched on all the time

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14
Q

What is the difference between the cellular proteome and the complete proteome?

A

The cellular proteome refers to all proteins produced in a specific cell type, while the complete proteome refers to all proteins produced by the entire organism

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15
Q

What is the Human Microbiome Project?

A

A project sequencing the genomes of thousands of prokaryotic and single - celled eukaryotic organisms to cure diseases and exploit useful genes

15
Q

How does the complexity of an organism affect the determination of its genome and proteome?

A

It is easier to determine the genomes and proteomes of simple organisms than complex ones

16
Q

Why is determining the proteome of prokaryotic organisms like bacteria relatively easy?

A
  1. Prokaryotes have a single, circular DNA molecule not associated with histones
  2. They lack non - coding portions of DNA typical of eukaryotic cells
17
Q

What are the applications of knowing the proteome of bacteria?

A
  1. Identification of proteins that act as antigens on human pathogens
  2. Antigens can be used to develop vaccines against disease
18
Q

How do vaccines based on bacterial antigens work?

A

Antigens are manufactured and administered to people, triggering memory cell production. These cells initiate a secondary immune response if the antigen is encountered again

19
Q

What potential use do genes from extremophile organisms have?

A

They can be used in cleaning up pollutants or manufacturing biofuels due to their ability to withstand extreme or toxic environments

19
Q

What is the human genome, how many genes does it contain?

A

The human genome is the complete set of genetic material in humans, containing approximately 20,000 genes

20
Q

What is the proteome, how does it relate to the genome?

A

The proteome refers to the entire set of proteins that can be produced by the genome

21
Q

Why is translating the genome into the proteome challenging in complex organisms?

A

Complex organisms have many non - coding genes and regulatory sequences, making it difficult to predict the proteome directly from the genome

22
Q

How does individual genetic variation affect DNA mapping?

A

All individuals have different DNA sequences, so the DNA used for mapping will differ, even if only slightly, from everyone else’s DNA