General microbiology Flashcards

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1
Q

What does the cell wall in gram positive bacteria consist of?

A

A thick peptidoglycan layer

Contains Teichoic acid

No periplasmic space

Vulnerable to lysozyme and penicillin

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2
Q

What does the cell wall in gram negative bacteria consist of?

A

Thin peptidoglycan layer and a layer of LPS

Contains murein lipoproteins

Have a periplasmic space and porin channels

NOT sensitive to lysozyme and penicillin attack

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3
Q

Gram staining: What is it, what do we use and what are the colors?

A

Gram staining, is a method of staining used to differentiate bacterial species into two large groups (gram-positive and gram-negative). The name comes from the Danish bacteriologist Hans Christian Gram, who developed the technique.

Gram staining differentiates bacteria by the chemical and physical properties of their cell walls by detecting peptidoglycan, which is present in the cell wall of gram-positive bacteria.

Gram-positive bacteria retain the crystal violet dye, and thus are stained violet/blue, while the gram-negative bacteria do not; after washing, a counterstain is added (commonly safranin) that will stain these gram-negative bacteria a pink/red color

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4
Q

What are the steps in Gram staining?

A

1: Crystal violet stain (a blue dye) for 1-2 min
2: Wash off with water and iodine (Lugol) for 1 min
3: Wash off with water and alcohol (95%)
4: Counter-stain with safrain (a red dye). Wait 1 min and wash off

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5
Q

What links the peptidoglycans in the cell wall? is there any antibiotics that work against it?

A

Transpeptidase (inhibited by pencillin: Beta-lactam).

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6
Q

What are the structure of LPS?

A

Lipid A (endotoxin)
Core polysaccaride
O-specific side chain (Antigen determinant O-antigen) - 40 unit repeats

Endotoxin can cause fever, diarrhea and possible endotoxic shock (septic shock)!

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7
Q

What are the different clarifications of bacteria based on morphology?

A
Round = cocci
Rods: Bacilli
          Short bacilli are called coccobacilli
Spiral shaped
Pleomorphic
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8
Q

What are the 3 different types of symbiosis?

A

• mutualism: advantageous for both (reciprocal benefit)
• commensalism: do not damage each other (neutral)
• parasitism: advantageous for microorganism
(unilateral benefit)
damages to macroorganisms → disease

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9
Q

What are the 3 different types of classification of parasites?

A

– obligate parasites: in defined host (range of hosts)
always pathogenic, never found in the normal flora
– facultative parasites: depending on the condition of both host and microbe, presence of predisposing /risk factors, members of the normal flora
– opportunistic parasites: member of the environment, not pathogenic for healthy people, take advantage in case of host disorders (usually immunosuppression)

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10
Q

How do we make a “simple stain”?

A

methylene blue for 1 min

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11
Q

What is consider to be a synonym to endotoxin?

A

Lipid A for LPS in gram negative bacteria

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12
Q

Structure of peptidoglycan

A

Peptidoglycan, also known as murein, is a polymer consisting of sugars and amino acids that forms a mesh-like layer outside the plasma membrane of most bacteria, forming the cell wall. The sugar component consists of alternating residues of β-(1,4) linked N-acetylglucosamine (NAG) and N-acetylmuramic acid (NAM)

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13
Q

Different types of hemolysis

A

Used for streptococcus species. Blood agar is a solid growth medium that contains red blood cells. The medium is used to detect bacteria that produce enzymes to break apart the blood cells. This process is also termed hemolysis. The degree to which the blood cells are hemolyzed is used to distinguish bacteria from one another.

Alpha hemolysis (α-hemolysis) is present, the agar under the colony is dark and greenish. Streptococcus pneumoniae and a group of oral streptococci (Streptococcus viridans or viridans streptococci) display alpha hemolysis. This is sometimes called green hemolysis because of the color change in the agar. Other synonymous terms are incomplete hemolysis and partial hemolysis. Alpha hemolysis is caused by hydrogen peroxide produced by the bacterium, oxidizing hemoglobin to green methemoglobin.

Beta hemolysis (β-hemolysis), sometimes called complete hemolysis, is a complete lysis of red cells in the media around and under the colonies: the area appears lightened (yellow) and transparent. E.g. Staphylococcus aureus, Streptococcus pyogenes, Bacillus cereus

If an organism does not induce hemolysis, the agar under and around the colony is unchanged, and the organism is called non-hemolytic or said to display gamma hemolysis (γ-hemolysis)

https: //en.wikipedia.org/wiki/Hemolysis_(microbiology)#/media/File:Streptococcal_hemolysis.jpg
https: //upload.wikimedia.org/wikipedia/commons/0/03/Gram-Positive_Classification.png

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14
Q

What is the “simple stain”?

A

Methylene blue - everything will have the same colour

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15
Q

What are the 3 types of nutrient types of bacteria?

A

Autotrophic: make organic from inorganic
Paratrophic: survive only in living cells
Hetrotrophic: require organic meterials carbon and nitrogen sources

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16
Q

What are the 4 types of O2 requirements for bacteria?

A

1: Obligate aerob: requires oxygen to grow.
2: Obligate anaerob: killed by normal atmospheric concentrations of oxygen (20.95% O2). Dont need O2 to grow.
3: Facultative anaerob: an organism that makes ATP by aerobic respiration if oxygen is present, but is capable of switching to fermentation or anaerobic respiration if oxygen is absen
4: Microaerophil / aerotolerant (more CO2 required). Microaerophiles require oxygen (typically 2-10% O2) for growth

Aerobs: possessing catalase and superoxide-dismutase enzymes. Carbohydrate metabolism

Anaerobs: no enzymes to neutralise toxic oxygenic materials. Fermentation!

Ability to neutralise toxic oxygen forms:
Superoxide dismutase (2 O2- + 2 H+ H2O2 + O2)
Catalase (2 H2O2 2 H2O + O2)

17
Q

What are the 4 stages in growth of bacteria?

A

I. Lag phase (adaptation)
II. Log phase (exponential growth)
III. Stationer phase (cell number steady)
IV. Declination phase (decrease in number)

18
Q

What types of agar do we use?

A

1: Simple
2: Blood: For the cultivation of fastidious bacteria (eg. Streptococcus pneumoniae). 5 % sterile blood RBC + protein: nutrient, FFA-neutralisation
3: Chocolate: For more fastidious bacteria (eg. Haemophilus influenzae). Heating blood agar. Release of haem

all in a petri dish

19
Q

How do we describe colonies in a petri dish?

A
colony size
colony shape (round, cloud-like)
colony consistence (smooth, dry, rough)
colony colour (pigment production)
hemolysis: alpha and beta
smell (lime tree, garlic)
20
Q

How can anaerobic bacteria be cultivated?

A

Anaerostat: N2-CO2 gas mixture insted of air

Liquid media: Removing O2 by 10-20 min boiling. Inoculation after cooling. Isolation with paraffine waw.

Chemical method: Decrease redox potential.

Biological method: Fortner- technology. One half of the petri dish with an very aerob bacteria, the second half with an anaerobic one.

21
Q

What is the deal with biofilms?

A

Make slime on suitable surfaces. Made of a polysaccharide matrix.

99% of microorganism in water live as biofilms on surfaces

Advantage for bacteria: Protection against antibiotics, immune system. Nutrient trap

Catheters, canules, branuls, impalntations, prosthesis, pacemakers, artificial heart valves!

Frequent exchange!

Diseases involving biofilm:
Native heart valve endocarditis (Streptococcus, S. aureus, KNS, Enterococcus, Gram -, Candida, Aspergillus)

Implantates: venous canules (central or periferial), urinary catheters (Enterococcus, Gram Pseudomonas, Serratia, Citrobacter), artificial valve, intrauterine devices (IUD), dental implantates (titanium), contact lenses, implanted eye lense, hip protesis, …

Chronic bacterial prostatitis

CF (cystic fibrosis): Pseudomonas aeruginosa, S. aureus, Burkholderia, H. influenzae (alginate formation!)

periodontitis, dental plaque

22
Q

Disinfectant are compared relative to?

A

The effect of phenol - “phenol coefficient”

To calculate phenol coefficient, the concentration of phenol at which the compound kills the test organism in 10 minutes, but not in 5 minutes, is divided by the concentration of the test compound that kills the organism under the same conditions (or, probably more common, dividing the dilution factor at which the tested substance shows activity by the dilution factor at which phenol shows comparable activity)

23
Q

Name som physical sterilization methods

A

Heat

1: Burning at over 1000C (burning until red glow for metal devices and glass)
2: Dry heat: More hours. E.g 180C (1h), 160C (2h) or 140C (3h). For inflammable materials.
3: Wet heat: Autoclave (hot saturated stea). 121C at 1 atm for 30 min or 134C at 2 atm for 10 min.
4: Chilling and cold: Doest not kill but limits growth.

Radiation

1: Gamma radiation. Dangerous and expensive
2: UV radiation. Destroy germs in air or operation theatres and laboratories.

24
Q

Name some chemical sterilization methods

A

Gas sterilization: Previously ethylene-oxide, nowadays β-propiolactone. Reactive alkyling agents (formaldehyde). Although; carcinogenic, requires ventilation for days (min. 48 h)

Cold sterilization with chemicals: Glutaric aldehyde. Billman solution. Sterilization time -> 3 h

Plasma sterilization: Ions and free radicals in gas phase. H2O2 vaporize. No toxic products.

25
Q

Name some disinfection methods

A

Wet heat

1: Cooking in boiling water (20-30 min)
2: Steam current in Arnold machine at 100C for 30-60 min
3: Pasteur method. 65C for 30 min or 85C for 5 min

Mechanical methods

1: Filtration
2: Ultrasound

Chemical methods

1: Relative strong acids and bases
2: Strong oxidizing agents (H2O2 halogens)
3: Detergents (interfere with membrane structure and function) - Anionic (low efficiency) and cationic (inverted soaps)
4: Phenols and alcohols
5: Heavy metal ions
6: Alkilating agents (formaldehyde)

26
Q

Which method can be used to detect endotoxin?

A

LAL test: the blood of Limulus polyphemus coagulates if endotoxin is added

27
Q

Name the general classifications of antibiotics

A

1: Inhibition of cell-wall synthesis
2: Disruption of cell membrane
3: Inhibition of protein syntheis
4: Inhibition of nucleic acid metabolism

28
Q

How can we determine the MIC

A

Dilution methods:
1: Tube dilution. Antibiotic is dissolved in a nutrient medium and a dilution series is prepared. After a suitable incubation time we examine bacterial growth by checking opalescence in the test tubes. The MIC of the antibiotic is present in the last tube where there is no growth. The last inoculation where we see no growth on the agar plate contains the MBC of the antibiotic

2: Agar dilution: Antibiotic is mixed into the agar plate. This method is a better model for in vivo conditions􀁹 Inoculation should be performed from the lower
towards the higher concentrations.

Diffusion methods:
1: E-test - Strip: The plastic strip is impregnated with an antibiotic in concentration gradient. MIC-value can be read where the edge of the inhibition zone meets the strip

2: Disc diffusion method: 􀁹 Preparation of a bacterial lawn by using a bacterial suspension with suitable density. Circular pieces of filter papers impregnated with abx are placed onto the lawn in proper distance from each other. Antibiotic diffuses into the agar thus its concentration at a certain site is inversely proportional to the distance. Inhibition zones can be seen.
Based on the size of the inhibition zone: R (resistant),
I (intermediate), S (sensitive)

29
Q

What are some mechanism of antibiotic resistance?

A
  1. Porin deficiency
  2. Efflux pumps
  3. Enzymatic inactivation (e.g. B-lactamase)
  4. Target modification
30
Q

How do we perform ELISA? What is it used for?

Know any other labelled immunoassays?

A

The enzyme-linked immunosorbent assay (ELISA) is a test that uses antibodies and color change to identify a substance.

ELISA is a popular format of “wet-lab” type analytic biochemistry assay that uses a solid-phase enzyme immunoassay (EIA) to detect the presence of a substance, usually an antigen, in a liquid sample or wet sample.
Direct vs. indirect.

ELISA: adding substrate (colour)
RIA: measurement of radioactivity
IF: UV microscope (fluorescence)

Other shit:

1: Radio immunoassay labelling with radioactive isotope
2: Immunofluorescence, labelling with fluorescent dye

31
Q

Complement fixation

A

The complement fixation test is an immunological medical test that can be used to detect the presence of either specific antibody or specific antigen in a patient’s serum, based on whether complement fixation occurs. It was widely used to diagnose infections, particularly with microbes that are not easily detected by culture methods, and in rheumatic diseases

Normally we check for antibodies is the patients serum. E.g. in syphilis diagnosis. Complement: lyses immunocomplex after binding to it. Making it visible: with indicator system = rbc+haemolysine.

Positive test -> No hemolysis
Negative test -> hemolysis

32
Q

What shit produce green colour?

A

pseudomonas aeruginosa

33
Q

How do you make chocolate agar?

A

Chocolate agar (CHOC) or chocolate blood agar (CBA) – is a non-selective, enriched growth medium used for isolation of pathogenic bacteria. It is a variant of the blood agar plate, containing red blood cells that have been lysed by slowly heating to 80 °C. Chocolate agar is used for growing fastidious respiratory bacteria, such as Haemophilus influenzae and Neisseria meningitidis. In addition, some of these bacteria, most notably H. influenzae, need growth factors such as NAD (factor V) and hemin (factor X), which are inside red blood cells; thus, a prerequisite to growth for these bacteria is lysis of the red blood cells. The heat also inactivates enzymes which could otherwise degrade NAD. The agar is named for the color and contains no actual chocolate.

Actually, you dont need RBC, but hemoglobin