Gene Inheritance, Meiosis, Cytogenetics Flashcards

1
Q

what are alleles?

A
  • are different forms of the same gene
  • can be multiple, non-identical versions of the gene or only 2 versions depending not the specific gene
  • can be dominant or recessive
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2
Q

Alleles and the human genome?

A

The human genome contains two versions of each gene (a paternal & a maternal copy)
-two copies don’t have to be identical, alleles are the variations in the two genes

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3
Q

Compound Heterozygotes

A

the presence of two mutant recessive alleles on the same gene locus in a pair of chromosomes

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4
Q

Phenotype of compound heterozygotes?

A

The symptoms/phenotype may be less severe because each mutant allele may partially complement the deficit of the other mutant allele
-can also be made more severe but this is rare

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5
Q

X-Linked Recessive

A
  • No male–> male transmission since father gives a Y to the son
  • Most cases boys
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6
Q

Why X-Linked Recessive Traits Uncommon in girls?

A

Because having the mutant recessive allele on both X chromosomes usually makes the disease too severe
-often times fatal

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7
Q

How X-Linked Recessive typically passed?

A

From unaffected carrier female to an affected son

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8
Q

Hypothesis if see only males affected by disease & male–> male transmission?

A

Autosomal dominant mutant allele but that is turned off/ doesn’t affect women
-due to changes in gene expression in men vs. women

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9
Q

Daughters of a male patient w/ X-linked inheritance and a +/+ female?

A

All daughters will be carriers

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10
Q

Mutation that causes Hemophilia A?

A
  • X-linked dominant

- more than 2000 sequence variants within the affected gene have been catalogued

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11
Q

X-Linked Dominant Inheritance in females?

A
  • Absence of male–> male transmission because males provide a Y to their sons
  • Affected fathers have all affected daughters since donate their mutated dominant X chromosome to their daughter
  • Look for affected father, all daughters and no sons affected
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12
Q

What marriage shows a direct difference between X-Linked Dominant and Autosomal Dominant?

A

Affected father x unaffected mother which gives a unique progeny ratio different than autosomal dominant

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13
Q

X-Linked Dominant Disorder in males?

A
  • if have an affected mother
  • some are more severe in males than females causes death during prenatal period
  • this can affect the ratio of male:to female affected because all males die before birth
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14
Q

How is mitochondrial genome (mtDNA) inherited?

A
  • Maternally inherited

- Disorders caused by mutations in mtDNA are transmitted from females to all children

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15
Q

Mitochondria & cell division? How does this affect pathogenic nature of mtDNA inheritance?

A
  • each cell has thousands of mitochondria each w/ own mtDNA
  • mitochondria are unevenly distributed during cell division
  • pathogenic mtDNA mutations can be heteroplasmic
  • meaning that an infected women can pass variable amounts of pathogenic mtDNA to child
  • meaning child can vary in severity of the disease depending on proportion of pathogenic to healthy mtDNA
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16
Q

Heteroplasmic

A

Meaning a mix of wild-type & mutated DNA within the same individual
-ex: because each cell has thousands of mitochondria each with own mtDNA, you can have a mix of healthy and pathogenic mtDNA in your body

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17
Q

What is locus heterogeneity? Phenotype of individuals affected?

A
  • when the same disorder can be caused by mutations in different genes
  • in some cases phenotype is indistinguishable even when mutation is on different genes
  • in other cases phenotypes have clear differences based on the specific mutant gene
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18
Q

What is allelic heterogeneity?

A

-a disease caused by different mutations in the same gene
-is found in almost all loss of function diseases (ex: hemophilia)
-

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19
Q

Allelic heterogeneity and severity?

A
  • Allelic heterogeneity is when one gene can have multiple mutant alleles
  • Severity of the disease phenotype is dependent on which specific mutant alleles the patient has
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20
Q

What is genomic imprinting?

A
  • is when an autosomal gene has only maternally or paternally derived allele active
  • the other allele is silenced
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21
Q

Genomic imprinting and diseased offspring?

A
  • If the maternal allele is deactivated in on a specific gene, regardless of whether the allele is mutant or not, the child will be unaffected since that allele is silenced anyway.
  • person only affected if the mutant allele is the active allele
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22
Q

What is polymorphism?

Fraction of human genome that is polymorphic?

A

1) A concept that is explained/defined by genetic diversity

2) 1% level (second most common allele has frequency >/= 1) so a very large fraction of human genome.

23
Q

What are alternative sequences of the gene called?

A

Alleles

24
Q

What does the Hardy-Weinberg law state?

A

That in the absence of other evolutionary influences (adaptations for survival etc.) , allele and genotype frequencies will remain constant

25
Q

What does highly polymorphic mean?

A

That a gene has thousands of alternative versions of alleles for the same gene
-ex: MHC proteins in humans

26
Q

Homologous recombination in chromosomes

A

-crossing over between homologous non-sister chromatids (maternal and paternal chromosomes) during cell division can lead to recombinant chromosomes

27
Q

Effect of homologous recombination?

A

-the sister chromatids in butterfly shape are no longer identical

28
Q

When/how are genes linked?

A

Genes are linked when they are extremely close together on the same chromosome

  • closer together the genes, the more closely linked & less likely will be separated by recombination
  • means are usually inherited together
29
Q

How can we determine if two genes are linked?

A
  • their proximity on a chromosome

- and by looking at analysis of recombination with the two genes

30
Q

Patchwork pattern of inheritance?

A

Means that during meiosis, we create unique chromosomes through recombination

  • is how/ why siblings have different chromosomes
  • our chromosomes are “patched together” from crossing over/recombination of parent chromosomes
31
Q

Twins and patchwork

A
  • identical twins (monozygotic) came from same egg
  • crossing over occurs in meiosis, therefore identical twins have same patchwork pattern for any chromosome e
  • fraternal twins will have different patchwork patterns for each chromosome since are no different than normal siblings
32
Q

What are mini satellites?(variable number of tandem repeats)

A
  • polymorphism (variable) reflecting different number of tandem repeats at a specific chromosomal site
  • usually 20-70 base pairs repeated
  • used in regulating gene expression
  • have create different alleles
33
Q

How detect mini satellites?

A

-detected by restriction digestion, southern blotting, or hi throughput sequencing

34
Q

What are micro satellites?

A
  • highly polymorphic simple short nucleotide repeats (di, try, or tetra nucleotide)
  • number of repeats is different on different copies of the same chromosome
  • used for regulating gene expression
35
Q

How detect microsatellites?

A

PCR

36
Q

What are SNPs? (single nucleotide polymorphism)

A
  • are short insertions of deletions (Indels)

- are polymorphic variations in one base pair in a DNA sequence

37
Q

How detect SNPs?

A

Detect by sequence analysis OR allele specific probes

-sequencing is easier since are so small

38
Q

What are copy number variants (CNV)?

A
  • deletion or duplication of segments of DNA ranging in size from 1kb- several Mb long
  • some are common, others very rare
39
Q

How detect CNVs?

A

1) array comparatively genomic hybridization (aCGH)

2) other array based methods

40
Q

How get chromosomes with deletions/duplciations? (CNVs)

A

-through unequal crossing over during meiosis

41
Q

indels

A

short insertion or deletion

42
Q

IF have four allele variations, how man alleles will an individual person have?

A

Each person will only have TWO alleles because we are diploid organisms
-we can only have 2 alleles even if have multiple allele Variations

43
Q

How many sets of chromosomes do we have?
How many chromosomes do we have?
What are the types of chromosomes?

A

23
46
-22 autosomes, chromosome 23 are the sex chromosomes

44
Q

12p 12 mean?

A

Chromosome 12, p arm, band 12

45
Q

How label individual chromosomes arms?

A
  • short arm=p arm

- long arm= q arm

46
Q

What are G-bands?

A
  • Giemsa banding
  • used in karyotypes
  • are numbered in a systematic manner based on position relative to centromere
  • as move farther from centromere, numbers get larger
47
Q

How classify chromosomes?

A

depends on position of centromere, will either be:

1) metacentric
2) submetacentric
3) afrocentric

48
Q

Metacentric chromosome?

A

centromere is in middle, q & p arms are same size

49
Q

Submetacentric chromosomes?

A

centromere is closer to one side than other

50
Q

Acrocentric chromosomes?

A

centromere is very close to one side

-p arm (upper arm) is extremely short

51
Q

How many afrocentric chromosomes in human karytotype? What do they encode?

A
  • 5 pairs, or 10 chromosomes

- each pair has genes encoding 18s and 28s rRNA in p arm

52
Q

Satellite at end of p arm in Acrocentric chromosomes?

A

p arm= short, upper arm in Acrocentric chromosomes

-is hertochromatic or composed of non-coding DNA

53
Q

Heterochromatic mean?

A

Non-coding DNA

54
Q

What is FISH?

-How does it work?

A

1) Fluorescence IN SITU Hybridization
2) Attach (hybridize) fluorescence-tagged DNA probe to chromosomes in metaphase, all the chromosomes arestained dull red w/ propidium iodide, then observed in fluorescent light
3) can have multiple colored probes that are chromosome & gene specific and be simultaneously analyzed